Wall clock time and date at job start Mon Mar 30 2020 04:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.48576 * 2 1 4 4 C 1.53051 * 109.50591 * 239.94871 * 2 1 3 5 5 N 1.46951 * 109.36209 * 181.61804 * 4 2 1 6 6 C 1.38863 * 110.99743 * 183.18627 * 5 4 2 7 7 C 1.39559 * 119.84091 * 292.24833 * 6 5 4 8 8 C 1.36344 * 120.16039 * 180.02562 * 7 6 5 9 9 C 1.40887 * 119.83279 * 0.25767 * 8 7 6 10 10 C 1.41142 * 120.15119 * 179.69995 * 9 8 7 11 11 H 1.08001 * 119.99585 * 204.60670 * 10 9 8 12 12 C 1.39864 * 120.00361 * 24.60879 * 10 9 8 13 13 N 1.30906 * 119.99534 * 17.97532 * 12 10 9 14 14 Si 1.86797 * 120.00149 * 197.97680 * 12 10 9 15 15 H 1.48498 * 109.46870 * 359.97438 * 14 12 10 16 16 H 1.48495 * 109.46848 * 120.00070 * 14 12 10 17 17 H 1.48500 * 109.47267 * 240.00027 * 14 12 10 18 18 C 1.40887 * 119.69144 * 359.46823 * 9 8 7 19 19 C 1.36345 * 119.83277 * 0.54963 * 18 9 8 20 20 C 1.46956 * 110.88076 * 59.32314 * 5 4 2 21 21 C 1.53051 * 109.36348 * 300.67603 * 20 5 4 22 22 N 1.46955 * 109.36698 * 58.40107 * 21 20 5 23 23 H 1.09004 * 109.46848 * 299.95313 * 1 2 3 24 24 H 1.08998 * 109.47175 * 59.95702 * 1 2 3 25 25 H 1.09001 * 109.47009 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.48772 * 61.64805 * 4 2 1 27 27 H 1.08996 * 109.48845 * 301.58821 * 4 2 1 28 28 H 1.08000 * 119.92471 * 359.97438 * 7 6 5 29 29 H 1.08003 * 120.08462 * 179.97438 * 8 7 6 30 30 H 0.96998 * 119.99383 * 179.97438 * 13 12 10 31 31 H 1.08000 * 120.08410 * 180.25449 * 18 9 8 32 32 H 1.07996 * 119.91712 * 179.71955 * 19 18 9 33 33 H 1.08995 * 109.49318 * 60.64352 * 20 5 4 34 34 H 1.09002 * 109.48953 * 180.68966 * 20 5 4 35 35 H 1.09000 * 109.49175 * 178.37004 * 21 20 5 36 36 H 1.09006 * 109.48935 * 298.43323 * 21 20 5 37 37 H 1.00898 * 111.00571 * 176.81237 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0411 -0.7225 -1.2487 5 7 3.5101 -0.7546 -1.2261 6 6 4.0128 -1.3405 -2.3804 7 6 3.8075 -2.7008 -2.6147 8 6 4.2987 -3.2829 -3.7456 9 6 5.0197 -2.5086 -4.6760 10 6 5.5366 -3.1056 -5.8458 11 1 6.3876 -2.6666 -6.3452 12 6 4.9467 -4.2656 -6.3583 13 7 3.7368 -4.6026 -5.9890 14 14 5.8851 -5.3338 -7.5697 15 1 7.2215 -4.7380 -7.8230 16 1 6.0494 -6.6968 -7.0037 17 1 5.1302 -5.4155 -8.8459 18 6 5.2180 -1.1346 -4.4356 19 6 4.7213 -0.5661 -3.3002 20 6 4.0004 -1.4483 -0.0269 21 6 3.4894 -0.7258 1.2218 22 7 2.0203 -0.6936 1.1993 23 1 -0.3633 0.5131 0.8904 24 1 -0.3633 0.5145 -0.8896 25 1 -0.3633 -1.0277 -0.0005 26 1 1.7026 -0.1930 -2.1393 27 1 1.6552 -1.7417 -1.2627 28 1 3.2590 -3.2942 -1.8982 29 1 4.1395 -4.3359 -3.9255 30 1 3.3276 -5.4069 -6.3447 31 1 5.7661 -0.5342 -5.1466 32 1 4.8765 0.4860 -3.1124 33 1 3.6368 -2.4758 -0.0269 34 1 5.0904 -1.4482 -0.0269 35 1 3.8278 -1.2553 2.1124 36 1 3.8753 0.2936 1.2358 37 1 1.6550 -0.2679 2.0379 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687744634.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:42 Heat of formation + Delta-G solvation = 24.863374 kcal Electronic energy + Delta-G solvation = -17684.366227 eV Core-core repulsion = 15039.764515 eV Total energy + Delta-G solvation = -2644.601712 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.28759 -37.21265 -34.61790 -32.97384 -31.97422 -29.45427 -29.04264 -27.05286 -25.71960 -23.58373 -22.07962 -21.04807 -20.15701 -19.06142 -17.32337 -16.48978 -15.49488 -15.11232 -14.80416 -14.63492 -14.02538 -13.91166 -13.62823 -12.84276 -12.58878 -12.18299 -12.05923 -12.03169 -11.84004 -11.66389 -11.27244 -11.13665 -10.95051 -10.82301 -10.68686 -10.40292 -10.30403 -9.76359 -9.49938 -9.16512 -8.37271 -7.67407 -7.54435 -7.22119 -6.79401 -4.35981 2.68579 3.05289 3.10293 3.11227 3.16033 3.90484 4.27300 4.54361 4.61495 5.09335 5.26986 5.40089 5.53979 5.62395 5.66655 5.75980 5.84185 5.88189 6.03286 6.17591 6.24310 6.30401 6.35635 6.41984 6.46052 6.89143 7.05068 7.10889 7.11764 7.35446 7.41059 7.50385 7.62499 7.68125 8.03109 8.10006 8.23374 8.43183 8.64603 8.86231 9.01245 10.13946 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.042747 B = 0.005030 C = 0.004900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.865443 B = 5565.605876 C = 5713.350226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.084 3.916 3 H 0.042 0.958 4 C 0.069 3.931 5 N -0.484 5.484 6 C -0.061 4.061 7 C -0.118 4.118 8 C -0.160 4.160 9 C 0.112 3.888 10 C -0.459 4.459 11 H 0.079 0.921 12 C 0.075 3.925 13 N -0.791 5.791 14 Si 0.908 3.092 15 H -0.260 1.260 16 H -0.272 1.272 17 H -0.274 1.274 18 C -0.228 4.228 19 C -0.059 4.059 20 C 0.062 3.938 21 C 0.061 3.939 22 N -0.688 5.688 23 H 0.051 0.949 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.073 0.927 27 H 0.038 0.962 28 H 0.083 0.917 29 H 0.116 0.884 30 H 0.280 0.720 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.038 0.962 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.034 0.966 37 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.085 4.500 9.068 10.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.026 4.026 3 H 0.060 0.940 4 C -0.058 4.058 5 N -0.205 5.205 6 C -0.155 4.155 7 C -0.138 4.138 8 C -0.180 4.180 9 C 0.110 3.890 10 C -0.488 4.488 11 H 0.097 0.903 12 C -0.143 4.143 13 N -0.416 5.416 14 Si 0.732 3.268 15 H -0.183 1.183 16 H -0.197 1.197 17 H -0.200 1.200 18 C -0.248 4.248 19 C -0.078 4.078 20 C -0.066 4.066 21 C -0.069 4.069 22 N -0.319 5.319 23 H 0.070 0.930 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.091 0.909 27 H 0.056 0.944 28 H 0.101 0.899 29 H 0.133 0.867 30 H 0.091 0.909 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.056 0.944 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.053 0.947 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.159 4.186 8.752 10.203 hybrid contribution 0.173 -0.505 -0.372 0.650 sum -2.986 3.681 8.380 9.628 Atomic orbital electron populations 1.21780 0.94524 1.02468 1.01391 1.21581 0.94518 0.95758 0.90738 0.93981 1.22189 0.88440 0.99135 0.96065 1.59301 1.06808 1.53272 1.01076 1.17955 1.10805 0.92054 0.94706 1.20862 1.00555 0.94786 0.97637 1.20941 1.03575 0.99970 0.93492 1.17674 0.89121 0.90460 0.91777 1.19608 1.13441 1.07461 1.08265 0.90291 1.25941 0.94118 0.97378 0.96853 1.69880 1.11664 1.22522 1.37496 0.86270 0.80860 0.79862 0.79815 1.18324 1.19677 1.19955 1.20675 1.09873 0.94987 0.99233 1.20115 0.96876 0.97254 0.93530 1.22135 0.99490 0.95874 0.89073 1.22009 0.87417 0.99246 0.98188 1.60546 1.08693 1.58223 1.04487 0.92975 0.92018 0.91894 0.90902 0.94408 0.89885 0.86651 0.90882 0.88826 0.88992 0.94362 0.90809 0.90913 0.94723 0.84763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.47 37.16 0.35 -1.32 16 2 C 0.08 1.19 3.19 -67.65 -0.22 0.97 16 3 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 4 C 0.07 1.23 4.67 -3.77 -0.02 1.21 16 5 N -0.48 -9.39 4.65 -170.81 -0.79 -10.18 16 6 C -0.06 -1.38 4.72 -83.69 -0.40 -1.77 16 7 C -0.12 -2.83 8.58 -39.77 -0.34 -3.17 16 8 C -0.16 -4.20 8.64 -39.26 -0.34 -4.54 16 9 C 0.11 3.00 5.57 -106.79 -0.60 2.41 16 10 C -0.46 -12.16 9.03 -37.87 -0.34 -12.50 16 11 H 0.08 2.01 7.91 -52.49 -0.41 1.60 16 12 C 0.08 1.88 5.13 -17.34 -0.09 1.79 16 13 N -0.79 -20.49 10.96 55.54 0.61 -19.88 16 14 Si 0.91 18.57 29.60 -169.99 -5.03 13.54 16 15 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 16 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 17 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 18 C -0.23 -5.64 9.74 -39.26 -0.38 -6.02 16 19 C -0.06 -1.36 9.90 -39.77 -0.39 -1.75 16 20 C 0.06 1.07 5.25 -3.77 -0.02 1.05 16 21 C 0.06 0.84 6.72 -3.77 -0.03 0.82 16 22 N -0.69 -9.20 6.55 -106.58 -0.70 -9.90 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.07 1.33 8.13 -51.93 -0.42 0.91 16 27 H 0.04 0.73 7.64 -51.93 -0.40 0.33 16 28 H 0.08 1.90 7.01 -52.49 -0.37 1.53 16 29 H 0.12 3.14 6.16 -52.48 -0.32 2.82 16 30 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 31 H 0.09 2.18 8.06 -52.49 -0.42 1.75 16 32 H 0.09 1.95 8.06 -52.49 -0.42 1.53 16 33 H 0.04 0.71 7.01 -51.93 -0.36 0.34 16 34 H 0.07 1.28 8.13 -51.93 -0.42 0.86 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.34 3.63 8.83 -39.29 -0.35 3.29 16 LS Contribution 297.77 15.07 4.49 4.49 Total: -1.00 -27.42 297.77 -9.81 -37.22 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -5.57 Total: 7.53 kcal Atomic # 6 Polarization: -20.02 SS G_CDS: -2.81 Total: -22.82 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: -0.88 Total: -39.96 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -27.42 -9.81 -37.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687744634.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.088 kcal (2) G-P(sol) polarization free energy of solvation -27.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds