Wall clock time and date at job start Mon Mar 30 2020 04:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.48576 * 2 1 4 4 C 1.53051 * 109.50591 * 239.94871 * 2 1 3 5 5 N 1.46951 * 109.36209 * 181.61804 * 4 2 1 6 6 C 1.38863 * 110.99743 * 183.18627 * 5 4 2 7 7 C 1.39559 * 119.84091 * 292.24833 * 6 5 4 8 8 C 1.36344 * 120.16039 * 180.02562 * 7 6 5 9 9 C 1.40887 * 119.83279 * 0.25767 * 8 7 6 10 10 C 1.41142 * 120.15119 * 179.69995 * 9 8 7 11 11 H 1.08001 * 119.99585 * 204.60670 * 10 9 8 12 12 C 1.39864 * 120.00361 * 24.60879 * 10 9 8 13 13 N 1.30906 * 119.99534 * 17.97532 * 12 10 9 14 14 Si 1.86797 * 120.00149 * 197.97680 * 12 10 9 15 15 H 1.48498 * 109.46870 * 359.97438 * 14 12 10 16 16 H 1.48495 * 109.46848 * 120.00070 * 14 12 10 17 17 H 1.48500 * 109.47267 * 240.00027 * 14 12 10 18 18 C 1.40887 * 119.69144 * 359.46823 * 9 8 7 19 19 C 1.36345 * 119.83277 * 0.54963 * 18 9 8 20 20 C 1.46956 * 110.88076 * 59.32314 * 5 4 2 21 21 C 1.53051 * 109.36348 * 300.67603 * 20 5 4 22 22 N 1.46955 * 109.36698 * 58.40107 * 21 20 5 23 23 H 1.09004 * 109.46848 * 299.95313 * 1 2 3 24 24 H 1.08998 * 109.47175 * 59.95702 * 1 2 3 25 25 H 1.09001 * 109.47009 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.48772 * 61.64805 * 4 2 1 27 27 H 1.08996 * 109.48845 * 301.58821 * 4 2 1 28 28 H 1.08000 * 119.92471 * 359.97438 * 7 6 5 29 29 H 1.08003 * 120.08462 * 179.97438 * 8 7 6 30 30 H 0.96998 * 119.99383 * 179.97438 * 13 12 10 31 31 H 1.08000 * 120.08410 * 180.25449 * 18 9 8 32 32 H 1.07996 * 119.91712 * 179.71955 * 19 18 9 33 33 H 1.08995 * 109.49318 * 60.64352 * 20 5 4 34 34 H 1.09002 * 109.48953 * 180.68966 * 20 5 4 35 35 H 1.09000 * 109.49175 * 178.37004 * 21 20 5 36 36 H 1.09006 * 109.48935 * 298.43323 * 21 20 5 37 37 H 1.00898 * 111.00571 * 176.81237 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0411 -0.7225 -1.2487 5 7 3.5101 -0.7546 -1.2261 6 6 4.0128 -1.3405 -2.3804 7 6 3.8075 -2.7008 -2.6147 8 6 4.2987 -3.2829 -3.7456 9 6 5.0197 -2.5086 -4.6760 10 6 5.5366 -3.1056 -5.8458 11 1 6.3876 -2.6666 -6.3452 12 6 4.9467 -4.2656 -6.3583 13 7 3.7368 -4.6026 -5.9890 14 14 5.8851 -5.3338 -7.5697 15 1 7.2215 -4.7380 -7.8230 16 1 6.0494 -6.6968 -7.0037 17 1 5.1302 -5.4155 -8.8459 18 6 5.2180 -1.1346 -4.4356 19 6 4.7213 -0.5661 -3.3002 20 6 4.0004 -1.4483 -0.0269 21 6 3.4894 -0.7258 1.2218 22 7 2.0203 -0.6936 1.1993 23 1 -0.3633 0.5131 0.8904 24 1 -0.3633 0.5145 -0.8896 25 1 -0.3633 -1.0277 -0.0005 26 1 1.7026 -0.1930 -2.1393 27 1 1.6552 -1.7417 -1.2627 28 1 3.2590 -3.2942 -1.8982 29 1 4.1395 -4.3359 -3.9255 30 1 3.3276 -5.4069 -6.3447 31 1 5.7661 -0.5342 -5.1466 32 1 4.8765 0.4860 -3.1124 33 1 3.6368 -2.4758 -0.0269 34 1 5.0904 -1.4482 -0.0269 35 1 3.8278 -1.2553 2.1124 36 1 3.8753 0.2936 1.2358 37 1 1.6550 -0.2679 2.0379 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687744634.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:42 Heat of formation + Delta-G solvation = 7.768845 kcal Electronic energy + Delta-G solvation = -17685.107501 eV Core-core repulsion = 15039.764515 eV Total energy + Delta-G solvation = -2645.342986 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.82015 -38.88091 -36.23821 -34.70282 -33.15290 -31.40108 -30.87726 -28.26138 -27.35882 -25.21194 -23.41665 -22.90552 -21.85131 -20.44918 -19.27354 -17.89453 -17.23619 -16.62587 -16.07597 -15.92115 -15.71941 -15.68475 -14.89880 -14.54568 -14.19397 -13.95573 -13.68533 -13.32187 -13.29616 -12.95196 -12.81743 -12.77794 -12.59809 -12.33245 -12.00480 -11.90471 -11.78518 -11.55016 -11.33442 -11.03713 -9.50908 -9.49765 -9.29184 -9.11044 -8.67339 -6.35315 0.84054 1.14089 1.37376 1.47377 1.53294 2.18972 2.66041 3.11479 3.22139 3.66775 3.93666 4.11124 4.25378 4.29456 4.35606 4.41026 4.51363 4.56017 4.68322 4.82214 4.84755 4.95264 4.96571 5.04907 5.07554 5.14501 5.23812 5.35252 5.40979 5.55140 5.69787 5.96356 6.05944 6.12395 6.22875 6.29794 6.50116 6.57694 6.74170 6.89382 7.09139 8.28647 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.042747 B = 0.005030 C = 0.004900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.865443 B = 5565.605876 C = 5713.350226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.092 3.908 3 H 0.046 0.954 4 C 0.069 3.931 5 N -0.487 5.487 6 C -0.047 4.047 7 C -0.121 4.121 8 C -0.181 4.181 9 C 0.082 3.918 10 C -0.494 4.494 11 H 0.079 0.921 12 C 0.034 3.966 13 N -0.825 5.825 14 Si 0.984 3.016 15 H -0.256 1.256 16 H -0.265 1.265 17 H -0.265 1.265 18 C -0.237 4.237 19 C -0.063 4.063 20 C 0.059 3.941 21 C 0.070 3.930 22 N -0.692 5.692 23 H 0.077 0.923 24 H 0.065 0.935 25 H 0.053 0.947 26 H 0.063 0.937 27 H 0.017 0.983 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.289 0.711 31 H 0.103 0.897 32 H 0.115 0.885 33 H 0.021 0.979 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.041 0.959 37 H 0.356 0.644 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.302 5.305 10.235 11.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.018 4.018 3 H 0.064 0.936 4 C -0.059 4.059 5 N -0.207 5.207 6 C -0.142 4.142 7 C -0.141 4.141 8 C -0.201 4.201 9 C 0.079 3.921 10 C -0.523 4.523 11 H 0.097 0.903 12 C -0.181 4.181 13 N -0.451 5.451 14 Si 0.805 3.195 15 H -0.179 1.179 16 H -0.189 1.189 17 H -0.189 1.189 18 C -0.257 4.257 19 C -0.082 4.082 20 C -0.069 4.069 21 C -0.060 4.060 22 N -0.326 5.326 23 H 0.096 0.904 24 H 0.084 0.916 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.036 0.964 28 H 0.106 0.894 29 H 0.116 0.884 30 H 0.099 0.901 31 H 0.122 0.878 32 H 0.133 0.867 33 H 0.040 0.960 34 H 0.089 0.911 35 H 0.116 0.884 36 H 0.059 0.941 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -3.391 5.013 9.952 11.648 hybrid contribution 0.185 -0.683 -0.625 0.944 sum -3.205 4.330 9.327 10.771 Atomic orbital electron populations 1.21740 0.92487 1.02397 1.02935 1.21486 0.96028 0.95088 0.89237 0.93620 1.22228 0.87159 0.98414 0.98069 1.59411 1.07895 1.52860 1.00555 1.18170 1.09160 0.91357 0.95532 1.20965 1.00343 0.95731 0.97070 1.20881 1.05207 0.99373 0.94676 1.18002 0.90071 0.91545 0.92435 1.19862 1.14237 1.09248 1.08980 0.90253 1.26822 0.94657 0.98036 0.98571 1.69931 1.13037 1.23275 1.38810 0.85127 0.79324 0.77731 0.77353 1.17920 1.18940 1.18927 1.20881 1.10114 0.94514 1.00144 1.20372 0.96387 0.98403 0.93008 1.22215 0.99443 0.95404 0.89791 1.21940 0.87708 0.99366 0.96985 1.60478 1.08453 1.58601 1.05100 0.90402 0.91567 0.92750 0.91871 0.96443 0.89397 0.88420 0.90080 0.87849 0.86688 0.96026 0.91137 0.88375 0.94051 0.82464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.47 71.98 0.68 -2.16 16 2 C 0.09 2.37 3.19 44.92 0.14 2.51 16 3 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 4 C 0.07 2.38 4.67 86.31 0.40 2.78 16 5 N -0.49 -18.44 4.65 -694.32 -3.23 -21.67 16 6 C -0.05 -2.15 4.72 38.67 0.18 -1.97 16 7 C -0.12 -5.95 8.58 22.15 0.19 -5.76 16 8 C -0.18 -9.92 8.64 22.48 0.19 -9.73 16 9 C 0.08 4.53 5.57 -21.27 -0.12 4.41 16 10 C -0.49 -26.99 9.03 23.38 0.21 -26.78 16 11 H 0.08 4.16 7.91 -2.91 -0.02 4.13 16 12 C 0.03 1.74 5.13 85.22 0.44 2.18 16 13 N -0.82 -43.95 10.96 21.82 0.24 -43.71 16 14 Si 0.98 38.37 29.60 68.60 2.03 40.40 16 15 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 16 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 17 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 18 C -0.24 -11.90 9.74 22.48 0.22 -11.68 16 19 C -0.06 -2.89 9.90 22.15 0.22 -2.67 16 20 C 0.06 1.97 5.25 86.31 0.45 2.42 16 21 C 0.07 1.72 6.72 86.31 0.58 2.30 16 22 N -0.69 -16.46 6.55 -491.11 -3.21 -19.68 16 23 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.06 2.28 8.13 -2.39 -0.02 2.26 16 27 H 0.02 0.67 7.64 -2.39 -0.02 0.65 16 28 H 0.09 4.15 7.01 -2.91 -0.02 4.13 16 29 H 0.10 5.60 6.16 -2.91 -0.02 5.58 16 30 H 0.29 13.83 8.30 -92.71 -0.77 13.06 16 31 H 0.10 4.86 8.06 -2.91 -0.02 4.84 16 32 H 0.12 4.71 8.06 -2.91 -0.02 4.69 16 33 H 0.02 0.79 7.01 -2.39 -0.02 0.77 16 34 H 0.07 2.37 8.13 -2.39 -0.02 2.35 16 35 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 37 H 0.36 6.31 8.83 -89.70 -0.79 5.52 16 Total: -1.00 -60.26 297.77 -0.12 -60.37 By element: Atomic # 1 Polarization: 28.16 SS G_CDS: 0.26 Total: 28.42 kcal Atomic # 6 Polarization: -47.93 SS G_CDS: 3.80 Total: -44.14 kcal Atomic # 7 Polarization: -78.85 SS G_CDS: -6.20 Total: -85.06 kcal Atomic # 14 Polarization: 38.37 SS G_CDS: 2.03 Total: 40.40 kcal Total: -60.26 -0.12 -60.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687744634.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.143 kcal (2) G-P(sol) polarization free energy of solvation -60.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds