Wall clock time and date at job start Mon Mar 30 2020 03:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30903 * 1 3 3 Si 1.86797 * 120.00311 * 2 1 4 4 H 1.48503 * 109.47019 * 269.99899 * 3 2 1 5 5 H 1.48498 * 109.46986 * 29.99508 * 3 2 1 6 6 H 1.48493 * 109.47324 * 150.00062 * 3 2 1 7 7 C 1.39868 * 119.99570 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99776 * 197.97306 * 7 2 1 9 9 C 1.41134 * 120.00410 * 17.97267 * 7 2 1 10 10 C 1.40889 * 120.15579 * 204.61378 * 9 7 2 11 11 C 1.36340 * 119.83249 * 179.97438 * 10 9 7 12 12 C 1.39562 * 120.16359 * 0.02562 * 11 10 9 13 13 N 1.38863 * 119.84194 * 179.97438 * 12 11 10 14 14 C 1.46846 * 111.00239 * 303.95751 * 13 12 11 15 15 C 1.53033 * 109.52253 * 185.83975 * 14 13 12 16 16 C 1.53120 * 109.27877 * 300.81690 * 15 14 13 17 17 C 1.53118 * 109.16126 * 57.65486 * 16 15 14 18 18 H 1.09004 * 109.50081 * 62.28520 * 17 16 15 19 19 N 1.46895 * 109.50439 * 182.36438 * 17 16 15 20 20 C 1.46852 * 110.99968 * 68.16610 * 13 12 11 21 21 C 1.39572 * 120.31701 * 0.23671 * 12 11 10 22 22 C 1.36334 * 120.15817 * 359.47987 * 21 12 11 23 23 H 0.96998 * 120.00040 * 359.97438 * 1 2 3 24 24 H 1.07993 * 120.07955 * 359.94985 * 10 9 7 25 25 H 1.08000 * 119.91569 * 180.02562 * 11 10 9 26 26 H 1.09000 * 109.46127 * 65.81962 * 14 13 12 27 27 H 1.09002 * 109.45869 * 305.85414 * 14 13 12 28 28 H 1.09007 * 109.50083 * 180.87835 * 15 14 13 29 29 H 1.08997 * 109.53885 * 60.77981 * 15 14 13 30 30 H 1.09006 * 109.52305 * 297.75027 * 16 15 14 31 31 H 1.09003 * 109.52575 * 177.56435 * 16 15 14 32 32 H 1.00900 * 111.00221 * 299.91936 * 19 17 16 33 33 H 1.00902 * 111.00363 * 63.88044 * 19 17 16 34 34 H 1.09005 * 109.45873 * 54.14260 * 20 13 12 35 35 H 1.09005 * 109.46189 * 294.17727 * 20 13 12 36 36 H 1.07994 * 119.91805 * 179.72122 * 21 12 11 37 37 H 1.07999 * 120.08456 * 180.23258 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.4906 2.0463 -1.4001 5 1 1.4405 2.6526 0.6999 6 1 3.5406 1.4401 0.7000 7 6 2.0083 -1.2113 0.0005 8 1 3.0488 -1.2341 0.2892 9 6 1.3543 -2.4040 -0.3761 10 6 1.8264 -3.6473 0.0889 11 6 1.1893 -4.7952 -0.2786 12 6 0.0723 -4.7408 -1.1136 13 7 -0.5712 -5.9142 -1.4842 14 6 0.3642 -6.8481 -2.1239 15 6 -0.4044 -8.0633 -2.6478 16 6 -1.1217 -8.7490 -1.4816 17 6 -2.0536 -7.7415 -0.8026 18 1 -2.8129 -7.4125 -1.5121 19 7 -2.7033 -8.3754 0.3523 20 6 -1.2372 -6.5355 -0.3322 21 6 -0.3977 -3.5131 -1.5824 22 6 0.2260 -2.3567 -1.2185 23 1 -0.4850 0.8400 0.0004 24 1 2.6911 -3.6908 0.7344 25 1 1.5498 -5.7490 0.0774 26 1 1.1067 -7.1743 -1.3956 27 1 0.8646 -6.3493 -2.9539 28 1 0.2924 -8.7635 -3.1087 29 1 -1.1376 -7.7401 -3.3866 30 1 -0.3861 -9.1075 -0.7616 31 1 -1.7054 -9.5897 -1.8567 32 1 -3.2474 -9.1758 0.0668 33 1 -2.0247 -8.6311 1.0538 34 1 -1.9000 -5.8097 0.1390 35 1 -0.4872 -6.8632 0.3877 36 1 -1.2599 -3.4789 -2.2319 37 1 -0.1410 -1.4071 -1.5790 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687744798.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:04 Heat of formation + Delta-G solvation = 15.498594 kcal Electronic energy + Delta-G solvation = -17639.949876 eV Core-core repulsion = 14994.942076 eV Total energy + Delta-G solvation = -2645.007799 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.35156 -37.18434 -34.68882 -33.20832 -31.87271 -29.57346 -28.80775 -27.84287 -25.31309 -23.19348 -22.08448 -21.09543 -20.12953 -19.34142 -17.32500 -16.25978 -15.92927 -15.23313 -14.51207 -14.24531 -14.08748 -13.73721 -13.57371 -13.38058 -12.81129 -12.62793 -12.29518 -12.02523 -11.77065 -11.29247 -11.14451 -11.04203 -10.86212 -10.71433 -10.70157 -10.43920 -10.21385 -9.70960 -9.52832 -9.16068 -8.62977 -7.67414 -7.53360 -7.25145 -6.78982 -4.35615 2.70314 3.05991 3.09221 3.09975 3.16949 3.91081 4.34553 4.58053 4.80260 4.95354 5.03890 5.24149 5.44579 5.64294 5.69832 5.71406 5.86932 5.94594 6.00330 6.18481 6.22717 6.31446 6.36753 6.40046 6.48551 6.89936 7.04023 7.15135 7.21506 7.28662 7.43375 7.52089 7.62503 7.69883 7.95596 8.06278 8.27142 8.47171 8.65140 8.86526 9.01191 10.15063 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.048566 B = 0.004862 C = 0.004737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.398888 B = 5757.309329 C = 5909.211570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.076 3.924 3 Si 0.909 3.091 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.460 4.460 8 H 0.078 0.922 9 C 0.113 3.887 10 C -0.221 4.221 11 C -0.110 4.110 12 C -0.058 4.058 13 N -0.479 5.479 14 C 0.061 3.939 15 C -0.113 4.113 16 C -0.152 4.152 17 C 0.092 3.908 18 H 0.087 0.913 19 N -0.844 5.844 20 C 0.072 3.928 21 C -0.067 4.067 22 C -0.167 4.167 23 H 0.281 0.719 24 H 0.089 0.911 25 H 0.081 0.919 26 H 0.027 0.973 27 H 0.072 0.928 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.338 0.662 33 H 0.337 0.663 34 H 0.078 0.922 35 H 0.024 0.976 36 H 0.093 0.907 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.791 -10.838 -2.458 11.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.489 4.489 8 H 0.096 0.904 9 C 0.110 3.890 10 C -0.241 4.241 11 C -0.130 4.130 12 C -0.153 4.153 13 N -0.200 5.200 14 C -0.067 4.067 15 C -0.152 4.152 16 C -0.191 4.191 17 C -0.020 4.020 18 H 0.105 0.895 19 N -0.372 5.372 20 C -0.055 4.055 21 C -0.086 4.086 22 C -0.187 4.187 23 H 0.092 0.908 24 H 0.107 0.893 25 H 0.099 0.901 26 H 0.045 0.955 27 H 0.091 0.909 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.150 0.850 33 H 0.149 0.851 34 H 0.097 0.903 35 H 0.042 0.958 36 H 0.112 0.888 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.762 -9.857 -2.682 10.582 hybrid contribution 1.619 -0.374 0.468 1.726 sum -1.143 -10.230 -2.215 10.530 Atomic orbital electron populations 1.69866 1.07577 1.29335 1.34538 1.25930 0.94732 1.01369 0.92231 0.86303 0.80479 0.80529 0.79372 1.19204 1.20269 1.18630 1.19575 0.98225 0.91392 1.39683 0.90424 1.17664 0.91063 0.91907 0.88335 1.20600 1.03849 0.92879 1.06810 1.20689 0.97036 0.96531 0.98744 1.17935 0.99512 0.89382 1.08447 1.58982 1.30315 1.03626 1.27057 1.22089 0.93524 0.92606 0.98440 1.21540 0.99458 0.96574 0.97581 1.22435 0.99390 0.98616 0.98705 1.21526 0.95299 0.93591 0.91572 0.89520 1.58828 1.29711 1.35127 1.13558 1.22030 0.96547 0.95175 0.91774 1.20297 0.98277 0.91406 0.98630 1.21006 0.99592 0.96850 1.01245 0.90761 0.89252 0.90130 0.95523 0.90945 0.92161 0.91192 0.92679 0.92491 0.84974 0.85101 0.90323 0.95772 0.88846 0.86306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.34 10.96 55.54 0.61 -19.73 16 2 C 0.08 1.89 5.13 -17.34 -0.09 1.80 16 3 Si 0.91 18.55 29.60 -169.99 -5.03 13.52 16 4 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 5 H -0.28 -5.54 7.11 56.52 0.40 -5.13 16 6 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 7 C -0.46 -12.18 9.03 -37.87 -0.34 -12.52 16 8 H 0.08 1.98 7.91 -52.48 -0.41 1.57 16 9 C 0.11 3.02 5.57 -106.79 -0.60 2.42 16 10 C -0.22 -5.50 9.74 -39.26 -0.38 -5.88 16 11 C -0.11 -2.51 8.64 -39.77 -0.34 -2.85 16 12 C -0.06 -1.31 4.68 -83.69 -0.39 -1.70 16 13 N -0.48 -9.04 4.59 -170.99 -0.79 -9.83 16 14 C 0.06 1.00 5.05 -3.84 -0.02 0.98 16 15 C -0.11 -1.46 6.09 -26.65 -0.16 -1.62 16 16 C -0.15 -1.81 5.57 -26.61 -0.15 -1.96 16 17 C 0.09 1.25 3.41 -67.64 -0.23 1.02 16 18 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 19 N -0.84 -9.96 9.26 -4.60 -0.04 -10.00 16 20 C 0.07 1.25 4.75 -3.83 -0.02 1.23 16 21 C -0.07 -1.60 9.90 -39.77 -0.39 -1.99 16 22 C -0.17 -4.36 8.64 -39.26 -0.34 -4.70 16 23 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 24 H 0.09 2.11 8.06 -52.49 -0.42 1.68 16 25 H 0.08 1.69 7.08 -52.49 -0.37 1.32 16 26 H 0.03 0.45 7.11 -51.93 -0.37 0.08 16 27 H 0.07 1.23 8.10 -51.93 -0.42 0.81 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.34 3.21 9.04 -39.29 -0.36 2.85 16 33 H 0.34 3.68 8.98 -39.29 -0.35 3.33 16 34 H 0.08 1.52 8.10 -51.93 -0.42 1.10 16 35 H 0.02 0.43 7.75 -51.93 -0.40 0.02 16 36 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 37 H 0.12 3.19 6.16 -52.49 -0.32 2.86 16 LS Contribution 297.30 15.07 4.48 4.48 Total: -1.00 -27.06 297.30 -9.75 -36.81 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -5.53 Total: 10.52 kcal Atomic # 6 Polarization: -22.31 SS G_CDS: -3.46 Total: -25.77 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: -0.22 Total: -39.56 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.03 Total: 13.52 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -27.06 -9.75 -36.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687744798.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.310 kcal (2) G-P(sol) polarization free energy of solvation -27.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds