Wall clock time and date at job start Mon Mar 30 2020 03:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30903 * 1 3 3 Si 1.86797 * 120.00311 * 2 1 4 4 H 1.48503 * 109.47019 * 269.99899 * 3 2 1 5 5 H 1.48498 * 109.46986 * 29.99508 * 3 2 1 6 6 H 1.48493 * 109.47324 * 150.00062 * 3 2 1 7 7 C 1.39868 * 119.99570 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99776 * 197.97306 * 7 2 1 9 9 C 1.41134 * 120.00410 * 17.97267 * 7 2 1 10 10 C 1.40889 * 120.15579 * 204.61378 * 9 7 2 11 11 C 1.36340 * 119.83249 * 179.97438 * 10 9 7 12 12 C 1.39562 * 120.16359 * 0.02562 * 11 10 9 13 13 N 1.38863 * 119.84194 * 179.97438 * 12 11 10 14 14 C 1.46846 * 111.00239 * 303.95751 * 13 12 11 15 15 C 1.53033 * 109.52253 * 185.83975 * 14 13 12 16 16 C 1.53120 * 109.27877 * 300.81690 * 15 14 13 17 17 C 1.53118 * 109.16126 * 57.65486 * 16 15 14 18 18 H 1.09004 * 109.50081 * 62.28520 * 17 16 15 19 19 N 1.46895 * 109.50439 * 182.36438 * 17 16 15 20 20 C 1.46852 * 110.99968 * 68.16610 * 13 12 11 21 21 C 1.39572 * 120.31701 * 0.23671 * 12 11 10 22 22 C 1.36334 * 120.15817 * 359.47987 * 21 12 11 23 23 H 0.96998 * 120.00040 * 359.97438 * 1 2 3 24 24 H 1.07993 * 120.07955 * 359.94985 * 10 9 7 25 25 H 1.08000 * 119.91569 * 180.02562 * 11 10 9 26 26 H 1.09000 * 109.46127 * 65.81962 * 14 13 12 27 27 H 1.09002 * 109.45869 * 305.85414 * 14 13 12 28 28 H 1.09007 * 109.50083 * 180.87835 * 15 14 13 29 29 H 1.08997 * 109.53885 * 60.77981 * 15 14 13 30 30 H 1.09006 * 109.52305 * 297.75027 * 16 15 14 31 31 H 1.09003 * 109.52575 * 177.56435 * 16 15 14 32 32 H 1.00900 * 111.00221 * 299.91936 * 19 17 16 33 33 H 1.00902 * 111.00363 * 63.88044 * 19 17 16 34 34 H 1.09005 * 109.45873 * 54.14260 * 20 13 12 35 35 H 1.09005 * 109.46189 * 294.17727 * 20 13 12 36 36 H 1.07994 * 119.91805 * 179.72122 * 21 12 11 37 37 H 1.07999 * 120.08456 * 180.23258 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.4906 2.0463 -1.4001 5 1 1.4405 2.6526 0.6999 6 1 3.5406 1.4401 0.7000 7 6 2.0083 -1.2113 0.0005 8 1 3.0488 -1.2341 0.2892 9 6 1.3543 -2.4040 -0.3761 10 6 1.8264 -3.6473 0.0889 11 6 1.1893 -4.7952 -0.2786 12 6 0.0723 -4.7408 -1.1136 13 7 -0.5712 -5.9142 -1.4842 14 6 0.3642 -6.8481 -2.1239 15 6 -0.4044 -8.0633 -2.6478 16 6 -1.1217 -8.7490 -1.4816 17 6 -2.0536 -7.7415 -0.8026 18 1 -2.8129 -7.4125 -1.5121 19 7 -2.7033 -8.3754 0.3523 20 6 -1.2372 -6.5355 -0.3322 21 6 -0.3977 -3.5131 -1.5824 22 6 0.2260 -2.3567 -1.2185 23 1 -0.4850 0.8400 0.0004 24 1 2.6911 -3.6908 0.7344 25 1 1.5498 -5.7490 0.0774 26 1 1.1067 -7.1743 -1.3956 27 1 0.8646 -6.3493 -2.9539 28 1 0.2924 -8.7635 -3.1087 29 1 -1.1376 -7.7401 -3.3866 30 1 -0.3861 -9.1075 -0.7616 31 1 -1.7054 -9.5897 -1.8567 32 1 -3.2474 -9.1758 0.0668 33 1 -2.0247 -8.6311 1.0538 34 1 -1.9000 -5.8097 0.1390 35 1 -0.4872 -6.8632 0.3877 36 1 -1.2599 -3.4789 -2.2319 37 1 -0.1410 -1.4071 -1.5790 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687744798.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:03 Heat of formation + Delta-G solvation = -1.396576 kcal Electronic energy + Delta-G solvation = -17640.682505 eV Core-core repulsion = 14994.942076 eV Total energy + Delta-G solvation = -2645.740429 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.84327 -38.83987 -36.21701 -34.82618 -33.15746 -31.49345 -30.59444 -29.06310 -26.99732 -24.74671 -23.34172 -22.85731 -21.86937 -20.63700 -19.25269 -17.83171 -17.06392 -16.98384 -15.95641 -15.68069 -15.64826 -15.20596 -14.86309 -14.64319 -14.50230 -14.06582 -13.91561 -13.52808 -13.49094 -13.10285 -12.79643 -12.52085 -12.33354 -12.20293 -11.91578 -11.79702 -11.73021 -11.42881 -11.27950 -11.02131 -9.57518 -9.48941 -9.26737 -9.13236 -8.66640 -6.34348 0.86855 1.13117 1.38224 1.50333 1.51905 2.19996 2.67094 3.04446 3.65659 3.77237 3.86545 3.95533 4.11132 4.31109 4.33491 4.40416 4.45800 4.62801 4.69381 4.77781 4.96058 4.97834 5.00439 5.11556 5.12217 5.15845 5.30495 5.33122 5.43429 5.63187 5.69443 6.01104 6.10405 6.19108 6.31472 6.32808 6.57376 6.63862 6.76360 6.90313 7.10623 8.30281 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.048566 B = 0.004862 C = 0.004737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.398888 B = 5757.309329 C = 5909.211570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.035 3.965 3 Si 0.985 3.015 4 H -0.261 1.261 5 H -0.267 1.267 6 H -0.258 1.258 7 C -0.496 4.496 8 H 0.077 0.923 9 C 0.082 3.918 10 C -0.235 4.235 11 C -0.110 4.110 12 C -0.043 4.043 13 N -0.487 5.487 14 C 0.058 3.942 15 C -0.106 4.106 16 C -0.144 4.144 17 C 0.102 3.898 18 H 0.079 0.921 19 N -0.849 5.849 20 C 0.075 3.925 21 C -0.077 4.077 22 C -0.185 4.185 23 H 0.290 0.710 24 H 0.095 0.905 25 H 0.103 0.897 26 H 0.025 0.975 27 H 0.062 0.938 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.355 0.645 33 H 0.343 0.657 34 H 0.050 0.950 35 H 0.021 0.979 36 H 0.103 0.897 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.825 -12.494 -2.793 12.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.180 4.180 3 Si 0.805 3.195 4 H -0.186 1.186 5 H -0.191 1.191 6 H -0.182 1.182 7 C -0.525 4.525 8 H 0.095 0.905 9 C 0.080 3.920 10 C -0.255 4.255 11 C -0.130 4.130 12 C -0.138 4.138 13 N -0.208 5.208 14 C -0.069 4.069 15 C -0.145 4.145 16 C -0.183 4.183 17 C -0.010 4.010 18 H 0.097 0.903 19 N -0.380 5.380 20 C -0.052 4.052 21 C -0.096 4.096 22 C -0.205 4.205 23 H 0.100 0.900 24 H 0.114 0.886 25 H 0.121 0.879 26 H 0.043 0.957 27 H 0.080 0.920 28 H 0.104 0.896 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.103 0.897 32 H 0.169 0.831 33 H 0.156 0.844 34 H 0.068 0.932 35 H 0.039 0.961 36 H 0.122 0.878 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.809 -11.552 -3.018 12.266 hybrid contribution 1.560 0.002 0.567 1.660 sum -1.249 -11.550 -2.451 11.873 Atomic orbital electron populations 1.69915 1.09078 1.30747 1.34996 1.26795 0.95479 1.04621 0.91097 0.85168 0.79032 0.75704 0.79600 1.18574 1.19147 1.18171 1.19819 0.98483 0.92583 1.41644 0.90532 1.17992 0.91844 0.92989 0.89214 1.20792 1.04428 0.93095 1.07230 1.20902 0.96869 0.96843 0.98388 1.18128 0.98671 0.90471 1.06549 1.59014 1.30695 1.03388 1.27708 1.22177 0.93537 0.93344 0.97804 1.21517 0.99671 0.95336 0.97952 1.22379 0.99207 0.98594 0.98154 1.21308 0.94965 0.92710 0.91997 0.90284 1.58730 1.29993 1.36170 1.13104 1.21984 0.96227 0.95951 0.91057 1.20481 0.98541 0.91658 0.98925 1.20955 1.00347 0.96982 1.02203 0.89969 0.88647 0.87941 0.95670 0.91982 0.89634 0.91167 0.92218 0.89723 0.83090 0.84373 0.93153 0.96107 0.87848 0.87844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.59 10.96 21.82 0.24 -43.35 16 2 C 0.04 1.81 5.13 85.23 0.44 2.24 16 3 Si 0.98 38.37 29.60 68.60 2.03 40.40 16 4 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 5 H -0.27 -9.86 7.11 99.48 0.71 -9.15 16 6 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 7 C -0.50 -27.18 9.03 23.38 0.21 -26.97 16 8 H 0.08 4.04 7.91 -2.91 -0.02 4.02 16 9 C 0.08 4.54 5.57 -21.27 -0.12 4.42 16 10 C -0.24 -11.95 9.74 22.48 0.22 -11.73 16 11 C -0.11 -5.02 8.64 22.15 0.19 -4.83 16 12 C -0.04 -1.95 4.68 38.67 0.18 -1.77 16 13 N -0.49 -17.95 4.59 -694.89 -3.19 -21.15 16 14 C 0.06 1.80 5.05 86.32 0.44 2.24 16 15 C -0.11 -2.39 6.09 30.65 0.19 -2.20 16 16 C -0.14 -2.87 5.57 30.67 0.17 -2.70 16 17 C 0.10 2.54 3.41 44.97 0.15 2.69 16 18 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 19 N -0.85 -17.86 9.26 -168.48 -1.56 -19.42 16 20 C 0.08 2.52 4.75 86.32 0.41 2.93 16 21 C -0.08 -3.77 9.90 22.15 0.22 -3.55 16 22 C -0.18 -10.04 8.64 22.48 0.19 -9.84 16 23 H 0.29 13.83 8.30 -92.71 -0.77 13.06 16 24 H 0.10 4.59 8.06 -2.91 -0.02 4.57 16 25 H 0.10 4.18 7.08 -2.91 -0.02 4.16 16 26 H 0.03 0.79 7.11 -2.39 -0.02 0.77 16 27 H 0.06 2.03 8.10 -2.39 -0.02 2.01 16 28 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 29 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 31 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.35 5.58 9.04 -89.69 -0.81 4.76 16 33 H 0.34 6.62 8.98 -89.69 -0.81 5.82 16 34 H 0.05 1.95 8.10 -2.38 -0.02 1.93 16 35 H 0.02 0.71 7.75 -2.38 -0.02 0.69 16 36 H 0.10 4.75 8.06 -2.91 -0.02 4.72 16 37 H 0.10 5.84 6.16 -2.91 -0.02 5.82 16 Total: -1.00 -59.84 297.30 -0.14 -59.98 By element: Atomic # 1 Polarization: 33.17 SS G_CDS: -0.54 Total: 32.63 kcal Atomic # 6 Polarization: -51.97 SS G_CDS: 2.89 Total: -49.08 kcal Atomic # 7 Polarization: -79.41 SS G_CDS: -4.51 Total: -83.92 kcal Atomic # 14 Polarization: 38.37 SS G_CDS: 2.03 Total: 40.40 kcal Total: -59.84 -0.14 -59.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687744798.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.580 kcal (2) G-P(sol) polarization free energy of solvation -59.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds