Wall clock time and date at job start Mon Mar 30 2020 03:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30905 * 1 3 3 Si 1.86797 * 119.99538 * 2 1 4 4 H 1.48506 * 109.46960 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47276 * 299.99466 * 3 2 1 6 6 H 1.48500 * 109.47573 * 59.99886 * 3 2 1 7 7 C 1.39861 * 120.00009 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99730 * 164.26155 * 7 2 1 9 9 C 1.41134 * 120.00146 * 344.54145 * 7 2 1 10 10 C 1.40887 * 120.15539 * 334.29517 * 9 7 2 11 11 C 1.36339 * 119.83112 * 179.73634 * 10 9 7 12 12 C 1.39569 * 120.16639 * 0.56306 * 11 10 9 13 13 N 1.38856 * 119.84332 * 179.71037 * 12 11 10 14 14 C 1.48540 * 110.99714 * 117.88471 * 13 12 11 15 15 C 1.54934 * 103.22507 * 159.71918 * 14 13 12 16 16 C 1.54600 * 102.92405 * 322.58480 * 15 14 13 17 17 H 1.08990 * 110.39157 * 263.00002 * 16 15 14 18 18 C 1.52998 * 110.31113 * 140.87050 * 16 15 14 19 19 N 1.46908 * 109.46822 * 69.28177 * 18 16 15 20 20 C 1.47901 * 110.99925 * 235.27836 * 13 12 11 21 21 C 1.39566 * 120.30921 * 359.68897 * 12 11 10 22 22 C 1.36331 * 120.16747 * 0.02562 * 21 12 11 23 23 H 0.96998 * 120.00747 * 0.02562 * 1 2 3 24 24 H 1.07995 * 120.08032 * 359.97438 * 10 9 7 25 25 H 1.08001 * 119.91951 * 180.27130 * 11 10 9 26 26 H 1.08992 * 110.66730 * 278.15418 * 14 13 12 27 27 H 1.08999 * 110.66608 * 41.28756 * 14 13 12 28 28 H 1.09000 * 110.72502 * 204.22974 * 15 14 13 29 29 H 1.09003 * 110.87623 * 81.01281 * 15 14 13 30 30 H 1.08990 * 109.47242 * 189.28483 * 18 16 15 31 31 H 1.09004 * 109.47148 * 309.28847 * 18 16 15 32 32 H 1.00903 * 110.99406 * 56.04984 * 19 18 16 33 33 H 1.00898 * 110.99670 * 179.97438 * 19 18 16 34 34 H 1.09003 * 109.91680 * 333.51019 * 20 13 12 35 35 H 1.09001 * 109.91773 * 94.60983 * 20 13 12 36 36 H 1.08007 * 119.91616 * 180.02562 * 21 12 11 37 37 H 1.08002 * 120.08558 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 3.7030 1.3465 -0.0006 5 1 1.8842 2.3964 -1.2126 6 1 1.8841 2.3966 1.2125 7 6 2.0084 -1.2112 0.0005 8 1 3.0580 -1.2288 -0.2532 9 6 1.3410 -2.4113 0.3269 10 6 0.1949 -2.3836 1.1458 11 6 -0.4477 -3.5462 1.4524 12 6 0.0339 -4.7629 0.9669 13 7 -0.6224 -5.9436 1.2884 14 6 -1.1433 -6.6122 0.0685 15 6 -1.3440 -8.0787 0.5263 16 6 -0.1380 -8.3163 1.4640 17 1 0.6693 -8.8128 0.9258 18 6 -0.5621 -9.1525 2.6731 19 7 -0.8656 -10.5227 2.2387 20 6 0.3042 -6.9117 1.9142 21 6 1.1717 -4.7983 0.1595 22 6 1.8212 -3.6431 -0.1601 23 1 -0.4851 0.8400 -0.0004 24 1 -0.1758 -1.4434 1.5264 25 1 -1.3290 -3.5262 2.0765 26 1 -2.0921 -6.1711 -0.2365 27 1 -0.4149 -6.5581 -0.7406 28 1 -1.3093 -8.7571 -0.3262 29 1 -2.2826 -8.1911 1.0690 30 1 0.2476 -9.1734 3.4023 31 1 -1.4489 -8.7106 3.1274 32 1 -0.0792 -10.9316 1.7565 33 1 -1.1480 -11.0954 3.0198 34 1 1.3238 -6.7187 1.5806 35 1 0.2475 -6.8315 2.9998 36 1 1.5386 -5.7434 -0.2130 37 1 2.7014 -3.6720 -0.7853 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687746706.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:07 Heat of formation + Delta-G solvation = 3.153761 kcal Electronic energy + Delta-G solvation = -17413.890696 eV Core-core repulsion = 14768.347585 eV Total energy + Delta-G solvation = -2645.543111 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.86911 -38.76177 -36.19111 -35.00188 -32.48759 -31.42589 -30.05780 -29.91211 -26.53034 -24.74153 -23.42619 -22.58261 -21.47784 -20.95159 -19.28256 -17.88842 -17.09633 -16.68404 -16.30740 -15.74449 -15.39187 -15.30162 -14.93840 -14.65207 -14.28756 -13.99477 -13.88978 -13.43573 -13.18896 -12.94039 -12.70555 -12.55720 -12.41093 -12.18497 -11.98400 -11.83466 -11.60855 -11.45085 -11.42105 -11.03288 -9.53834 -9.48685 -9.28527 -9.13106 -8.64934 -6.34838 0.85726 1.12576 1.38244 1.48101 1.53695 2.20116 2.67831 3.28767 3.52035 3.67775 3.82552 3.93147 4.17245 4.33070 4.42547 4.45736 4.53138 4.59098 4.75083 4.78062 4.88394 4.97021 5.01746 5.11431 5.14735 5.21490 5.30876 5.36554 5.41057 5.62750 5.69635 6.01056 6.07800 6.10554 6.26587 6.31934 6.58655 6.66550 6.76379 6.90566 7.10412 8.31557 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.065071 B = 0.004378 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.193684 B = 6394.136017 C = 6481.287456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.033 3.967 3 Si 0.986 3.014 4 H -0.258 1.258 5 H -0.265 1.265 6 H -0.263 1.263 7 C -0.495 4.495 8 H 0.076 0.924 9 C 0.081 3.919 10 C -0.183 4.183 11 C -0.080 4.080 12 C -0.050 4.050 13 N -0.473 5.473 14 C 0.032 3.968 15 C -0.090 4.090 16 C -0.088 4.088 17 H 0.079 0.921 18 C 0.079 3.921 19 N -0.853 5.853 20 C 0.042 3.958 21 C -0.110 4.110 22 C -0.234 4.234 23 H 0.289 0.711 24 H 0.105 0.895 25 H 0.103 0.897 26 H 0.068 0.932 27 H 0.034 0.966 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.032 0.968 31 H 0.068 0.932 32 H 0.346 0.654 33 H 0.350 0.650 34 H 0.036 0.964 35 H 0.073 0.927 36 H 0.106 0.894 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.452 -12.959 3.203 13.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.182 4.182 3 Si 0.806 3.194 4 H -0.182 1.182 5 H -0.190 1.190 6 H -0.188 1.188 7 C -0.525 4.525 8 H 0.094 0.906 9 C 0.079 3.921 10 C -0.203 4.203 11 C -0.099 4.099 12 C -0.145 4.145 13 N -0.194 5.194 14 C -0.094 4.094 15 C -0.128 4.128 16 C -0.107 4.107 17 H 0.097 0.903 18 C -0.052 4.052 19 N -0.384 5.384 20 C -0.085 4.085 21 C -0.130 4.130 22 C -0.254 4.254 23 H 0.099 0.901 24 H 0.123 0.877 25 H 0.121 0.879 26 H 0.087 0.913 27 H 0.052 0.948 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.050 0.950 31 H 0.086 0.914 32 H 0.158 0.842 33 H 0.164 0.836 34 H 0.054 0.946 35 H 0.092 0.908 36 H 0.124 0.876 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.662 -12.339 3.116 12.834 hybrid contribution 1.750 0.617 -0.079 1.857 sum 0.088 -11.722 3.037 12.109 Atomic orbital electron populations 1.69910 1.09001 1.30575 1.35552 1.26801 0.95551 1.04635 0.91185 0.85106 0.79313 0.75964 0.78989 1.18153 1.19015 1.18791 1.19838 0.97604 0.92267 1.42743 0.90571 1.17999 0.92025 0.93026 0.89068 1.20981 0.99925 0.96940 1.02472 1.20478 0.98526 0.91750 0.99125 1.18375 0.97951 0.91024 1.07155 1.61924 1.32430 1.01882 1.23187 1.23382 0.99330 0.95208 0.91500 1.22327 0.98288 0.93227 0.98998 1.21949 0.98089 0.93773 0.96916 0.90293 1.21716 0.99472 0.89404 0.94579 1.58654 1.43797 1.03319 1.32625 1.23009 0.94360 0.91215 0.99921 1.20890 0.96528 0.96903 0.98688 1.20821 1.03961 0.93256 1.07370 0.90051 0.87747 0.87916 0.91333 0.94788 0.90058 0.90778 0.94968 0.91397 0.84157 0.83635 0.94606 0.90850 0.87587 0.88549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.67 10.89 21.81 0.24 -43.44 16 2 C 0.03 1.68 5.18 85.22 0.44 2.13 16 3 Si 0.99 38.40 29.59 68.60 2.03 40.43 16 4 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 5 H -0.27 -9.88 7.11 99.48 0.71 -9.17 16 6 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 7 C -0.50 -27.12 9.04 23.37 0.21 -26.91 16 8 H 0.08 4.02 7.89 -2.91 -0.02 3.99 16 9 C 0.08 4.49 5.57 -21.27 -0.12 4.37 16 10 C -0.18 -9.96 8.62 22.48 0.19 -9.77 16 11 C -0.08 -3.93 9.90 22.15 0.22 -3.71 16 12 C -0.05 -2.25 4.86 38.67 0.19 -2.06 16 13 N -0.47 -17.76 5.25 -682.28 -3.58 -21.34 16 14 C 0.03 1.06 6.42 86.65 0.56 1.62 16 15 C -0.09 -2.28 6.48 31.80 0.21 -2.08 16 16 C -0.09 -2.09 3.16 -9.91 -0.03 -2.12 16 17 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 18 C 0.08 1.55 5.88 86.30 0.51 2.06 16 19 N -0.85 -13.48 9.49 -186.71 -1.77 -15.25 16 20 C 0.04 1.32 6.13 86.45 0.53 1.85 16 21 C -0.11 -5.00 7.79 22.15 0.17 -4.83 16 22 C -0.23 -11.83 9.74 22.48 0.22 -11.62 16 23 H 0.29 13.75 8.30 -92.71 -0.77 12.98 16 24 H 0.10 5.91 6.15 -2.91 -0.02 5.89 16 25 H 0.10 4.75 8.06 -2.91 -0.02 4.73 16 26 H 0.07 2.31 8.14 -2.39 -0.02 2.30 16 27 H 0.03 1.17 6.92 -2.39 -0.02 1.16 16 28 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.07 1.89 7.76 -2.39 -0.02 1.87 16 30 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.07 1.47 8.00 -2.39 -0.02 1.45 16 32 H 0.35 4.60 8.99 -89.69 -0.81 3.80 16 33 H 0.35 4.28 9.08 -89.70 -0.81 3.46 16 34 H 0.04 1.20 6.35 -2.39 -0.02 1.18 16 35 H 0.07 2.23 7.69 -2.39 -0.02 2.21 16 36 H 0.11 4.27 7.01 -2.91 -0.02 4.25 16 37 H 0.10 4.61 8.06 -2.91 -0.02 4.58 16 Total: -1.00 -59.82 298.13 -0.33 -60.15 By element: Atomic # 1 Polarization: 31.05 SS G_CDS: -0.54 Total: 30.50 kcal Atomic # 6 Polarization: -54.35 SS G_CDS: 3.29 Total: -51.06 kcal Atomic # 7 Polarization: -74.91 SS G_CDS: -5.12 Total: -80.03 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 2.03 Total: 40.43 kcal Total: -59.82 -0.33 -60.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687746706.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.305 kcal (2) G-P(sol) polarization free energy of solvation -59.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds