Wall clock time and date at job start Mon Mar 30 2020 03:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86798 * 120.00067 * 2 1 4 4 H 1.48497 * 109.47178 * 240.00237 * 3 2 1 5 5 H 1.48500 * 109.47153 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47249 * 119.99691 * 3 2 1 7 7 C 1.39927 * 120.00167 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00092 * 197.88309 * 7 2 1 9 9 C 1.41407 * 120.00003 * 17.88349 * 7 2 1 10 10 C 1.40789 * 120.20545 * 24.46156 * 9 7 2 11 11 C 1.37646 * 119.89204 * 179.97438 * 10 9 7 12 12 C 1.38525 * 120.32745 * 0.03060 * 11 10 9 13 13 C 1.39298 * 120.42329 * 359.97438 * 12 11 10 14 14 N 1.39681 * 119.95329 * 179.97438 * 13 12 11 15 15 C 1.47441 * 111.00095 * 239.87722 * 14 13 12 16 16 C 1.54324 * 107.23192 * 236.74341 * 15 14 13 17 17 C 1.55141 * 103.17330 * 337.62775 * 16 15 14 18 18 H 1.09000 * 110.98664 * 277.64800 * 17 16 15 19 19 C 1.53000 * 110.98933 * 153.83439 * 17 16 15 20 20 N 1.46905 * 109.46985 * 66.45239 * 19 17 16 21 21 C 1.47848 * 111.00049 * 119.03013 * 14 13 12 22 22 C 1.38316 * 120.09539 * 0.25448 * 13 12 11 23 23 H 0.97003 * 120.00064 * 0.02562 * 1 2 3 24 24 H 1.07997 * 120.05559 * 359.97438 * 10 9 7 25 25 H 1.08004 * 119.83957 * 179.97438 * 11 10 9 26 26 H 1.08000 * 119.79075 * 179.97438 * 12 11 10 27 27 H 1.08993 * 109.89023 * 117.33729 * 15 14 13 28 28 H 1.09005 * 110.02503 * 356.22042 * 15 14 13 29 29 H 1.08994 * 110.70422 * 96.09564 * 16 15 14 30 30 H 1.08999 * 110.70319 * 219.15875 * 16 15 14 31 31 H 1.08999 * 109.47005 * 186.44558 * 19 17 16 32 32 H 1.08995 * 109.47022 * 306.45450 * 19 17 16 33 33 H 1.00900 * 110.99910 * 179.97438 * 20 19 17 34 34 H 1.00904 * 111.00173 * 303.94995 * 20 19 17 35 35 H 1.08998 * 110.37447 * 265.19425 * 21 14 13 36 36 H 1.09005 * 110.37319 * 27.42738 * 21 14 13 37 37 H 1.07999 * 120.16499 * 179.70259 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2773 2.7464 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0080 -1.2118 0.0005 8 1 3.0488 -1.2342 0.2877 9 6 1.3522 -2.4070 -0.3750 10 6 0.2217 -2.3615 -1.2129 11 6 -0.4113 -3.5290 -1.5748 12 6 0.0580 -4.7497 -1.1182 13 6 1.1752 -4.8103 -0.2885 14 7 1.6397 -6.0464 0.1667 15 6 1.6176 -6.1094 1.6396 16 6 3.0522 -6.4370 2.1048 17 6 3.6856 -7.1032 0.8551 18 1 3.4174 -8.1581 0.7969 19 6 5.2052 -6.9252 0.8500 20 7 5.7898 -7.6751 1.9697 21 6 3.0221 -6.2956 -0.2945 22 6 1.8220 -3.6476 0.0900 23 1 -0.4850 0.8401 -0.0004 24 1 -0.1482 -1.4122 -1.5711 25 1 -1.2787 -3.4930 -2.2174 26 1 -0.4457 -5.6603 -1.4072 27 1 0.9338 -6.8924 1.9671 28 1 1.3051 -5.1490 2.0497 29 1 3.5889 -5.5260 2.3695 30 1 3.0358 -7.1311 2.9450 31 1 5.6117 -7.2995 -0.0896 32 1 5.4474 -5.8677 0.9551 33 1 6.7935 -7.5738 1.9879 34 1 5.3814 -7.3911 2.8476 35 1 3.0156 -6.8807 -1.2142 36 1 3.5463 -5.3525 -0.4492 37 1 2.6854 -3.6930 0.7371 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687747265.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:12 Heat of formation + Delta-G solvation = 17.800640 kcal Electronic energy + Delta-G solvation = -17664.118239 eV Core-core repulsion = 15019.210264 eV Total energy + Delta-G solvation = -2644.907975 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.42335 -37.00382 -34.82702 -33.43980 -30.93585 -29.84734 -28.86542 -27.24357 -25.27808 -23.90471 -21.85568 -20.75494 -19.89023 -19.65271 -17.25456 -16.10353 -15.80672 -15.46124 -14.95134 -14.49841 -14.24482 -13.52726 -13.39577 -13.07730 -12.95194 -12.68678 -12.39162 -12.08627 -11.59849 -11.25545 -11.15461 -11.00173 -10.76581 -10.68927 -10.55384 -10.49869 -10.26616 -9.91076 -9.50465 -9.16054 -8.80417 -7.78928 -7.48918 -7.21378 -6.76945 -4.38523 2.78699 2.86758 3.04185 3.06522 3.21806 3.90900 4.39174 4.53666 4.59138 4.84847 5.08737 5.17046 5.48187 5.55289 5.62070 5.71107 5.84875 5.93299 6.01253 6.15577 6.27225 6.33304 6.38544 6.53736 6.55289 6.87121 7.00689 7.01596 7.10632 7.19688 7.30852 7.35437 7.45495 7.75565 7.96832 8.07203 8.18560 8.35737 8.63919 8.87444 8.97876 10.17567 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.024273 B = 0.006161 C = 0.005247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.266927 B = 4543.335055 C = 5335.459056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.078 3.922 3 Si 0.906 3.094 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.467 4.467 8 H 0.074 0.926 9 C 0.114 3.886 10 C -0.161 4.161 11 C -0.106 4.106 12 C -0.209 4.209 13 C 0.095 3.905 14 N -0.491 5.491 15 C 0.048 3.952 16 C -0.137 4.137 17 C -0.095 4.095 18 H 0.087 0.913 19 C 0.070 3.930 20 N -0.851 5.851 21 C 0.054 3.946 22 C -0.248 4.248 23 H 0.281 0.719 24 H 0.118 0.882 25 H 0.091 0.909 26 H 0.093 0.907 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.029 0.971 33 H 0.338 0.662 34 H 0.340 0.660 35 H 0.074 0.926 36 H 0.053 0.947 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.316 -7.331 2.364 9.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.497 4.497 8 H 0.092 0.908 9 C 0.111 3.889 10 C -0.180 4.180 11 C -0.125 4.125 12 C -0.229 4.229 13 C 0.002 3.998 14 N -0.212 5.212 15 C -0.079 4.079 16 C -0.175 4.175 17 C -0.115 4.115 18 H 0.106 0.894 19 C -0.061 4.061 20 N -0.380 5.380 21 C -0.073 4.073 22 C -0.269 4.269 23 H 0.092 0.908 24 H 0.136 0.864 25 H 0.109 0.891 26 H 0.112 0.888 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.047 0.953 33 H 0.150 0.850 34 H 0.152 0.848 35 H 0.092 0.908 36 H 0.072 0.928 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.462 -8.193 1.816 10.013 hybrid contribution 1.144 2.430 0.747 2.788 sum 6.606 -5.763 2.563 9.133 Atomic orbital electron populations 1.69819 1.07530 1.29261 1.35405 1.25869 0.94696 1.01177 0.92235 0.86403 0.80190 0.80414 0.79912 1.18851 1.20286 1.19122 1.19482 0.97988 0.91330 1.40900 0.90809 1.17475 0.91125 0.91708 0.88543 1.21385 0.99092 0.96890 1.00617 1.20654 0.98780 0.93068 0.99983 1.20209 1.00007 0.96238 1.06445 1.18489 0.96175 0.86795 0.98299 1.61114 1.20720 1.30892 1.08509 1.22824 0.95780 1.01517 0.87734 1.22836 0.96826 1.00053 0.97817 1.22410 0.93331 1.00512 0.95204 0.89421 1.21724 0.94290 0.95366 0.94671 1.58729 1.09468 1.63033 1.06807 1.23160 0.87923 0.98926 0.97315 1.21300 1.04416 0.93197 1.08018 0.90838 0.86427 0.89095 0.88843 0.91251 0.91924 0.91881 0.91146 0.90944 0.95301 0.84973 0.84768 0.90803 0.92826 0.89482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.58 10.96 55.55 0.61 -19.97 16 2 C 0.08 1.96 5.14 -17.35 -0.09 1.87 16 3 Si 0.91 18.68 29.59 -169.99 -5.03 13.65 16 4 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 6 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 7 C -0.47 -12.43 9.05 -37.74 -0.34 -12.77 16 8 H 0.07 1.90 7.91 -52.49 -0.41 1.48 16 9 C 0.11 3.06 5.57 -106.85 -0.60 2.46 16 10 C -0.16 -4.19 8.70 -38.83 -0.34 -4.53 16 11 C -0.11 -2.52 10.02 -39.69 -0.40 -2.91 16 12 C -0.21 -4.83 9.97 -39.08 -0.39 -5.22 16 13 C 0.10 2.17 4.64 -83.86 -0.39 1.78 16 14 N -0.49 -9.49 5.16 -167.68 -0.86 -10.35 16 15 C 0.05 0.83 6.51 -2.83 -0.02 0.81 16 16 C -0.14 -1.91 5.60 -24.90 -0.14 -2.05 16 17 C -0.10 -1.30 3.31 -88.23 -0.29 -1.59 16 18 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 19 C 0.07 0.84 6.31 -3.82 -0.02 0.82 16 20 N -0.85 -8.79 9.62 -10.37 -0.10 -8.89 16 21 C 0.05 0.91 6.04 -2.04 -0.01 0.89 16 22 C -0.25 -6.07 7.53 -38.67 -0.29 -6.36 16 23 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 24 H 0.12 3.16 6.15 -52.49 -0.32 2.83 16 25 H 0.09 1.92 8.06 -52.48 -0.42 1.50 16 26 H 0.09 2.01 8.06 -52.49 -0.42 1.59 16 27 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.06 1.21 7.01 -51.93 -0.36 0.85 16 29 H 0.06 0.91 8.01 -51.93 -0.42 0.50 16 30 H 0.07 0.85 8.11 -51.93 -0.42 0.43 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.03 0.36 8.11 -51.93 -0.42 -0.06 16 33 H 0.34 2.86 9.08 -39.29 -0.36 2.51 16 34 H 0.34 3.29 8.20 -39.29 -0.32 2.97 16 35 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 36 H 0.05 0.98 6.71 -51.93 -0.35 0.63 16 37 H 0.09 2.07 7.72 -52.49 -0.41 1.67 16 LS Contribution 299.02 15.07 4.51 4.51 Total: -1.00 -27.57 299.02 -9.66 -37.23 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -5.46 Total: 10.63 kcal Atomic # 6 Polarization: -23.49 SS G_CDS: -3.32 Total: -26.81 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: -0.36 Total: -39.21 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.03 Total: 13.65 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -27.57 -9.66 -37.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687747265.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.030 kcal (2) G-P(sol) polarization free energy of solvation -27.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds