Wall clock time and date at job start Mon Mar 30 2020 03:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86798 * 120.00067 * 2 1 4 4 H 1.48497 * 109.47178 * 240.00237 * 3 2 1 5 5 H 1.48500 * 109.47153 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47249 * 119.99691 * 3 2 1 7 7 C 1.39927 * 120.00167 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00092 * 197.88309 * 7 2 1 9 9 C 1.41407 * 120.00003 * 17.88349 * 7 2 1 10 10 C 1.40789 * 120.20545 * 24.46156 * 9 7 2 11 11 C 1.37646 * 119.89204 * 179.97438 * 10 9 7 12 12 C 1.38525 * 120.32745 * 0.03060 * 11 10 9 13 13 C 1.39298 * 120.42329 * 359.97438 * 12 11 10 14 14 N 1.39681 * 119.95329 * 179.97438 * 13 12 11 15 15 C 1.47441 * 111.00095 * 239.87722 * 14 13 12 16 16 C 1.54324 * 107.23192 * 236.74341 * 15 14 13 17 17 C 1.55141 * 103.17330 * 337.62775 * 16 15 14 18 18 H 1.09000 * 110.98664 * 277.64800 * 17 16 15 19 19 C 1.53000 * 110.98933 * 153.83439 * 17 16 15 20 20 N 1.46905 * 109.46985 * 66.45239 * 19 17 16 21 21 C 1.47848 * 111.00049 * 119.03013 * 14 13 12 22 22 C 1.38316 * 120.09539 * 0.25448 * 13 12 11 23 23 H 0.97003 * 120.00064 * 0.02562 * 1 2 3 24 24 H 1.07997 * 120.05559 * 359.97438 * 10 9 7 25 25 H 1.08004 * 119.83957 * 179.97438 * 11 10 9 26 26 H 1.08000 * 119.79075 * 179.97438 * 12 11 10 27 27 H 1.08993 * 109.89023 * 117.33729 * 15 14 13 28 28 H 1.09005 * 110.02503 * 356.22042 * 15 14 13 29 29 H 1.08994 * 110.70422 * 96.09564 * 16 15 14 30 30 H 1.08999 * 110.70319 * 219.15875 * 16 15 14 31 31 H 1.08999 * 109.47005 * 186.44558 * 19 17 16 32 32 H 1.08995 * 109.47022 * 306.45450 * 19 17 16 33 33 H 1.00900 * 110.99910 * 179.97438 * 20 19 17 34 34 H 1.00904 * 111.00173 * 303.94995 * 20 19 17 35 35 H 1.08998 * 110.37447 * 265.19425 * 21 14 13 36 36 H 1.09005 * 110.37319 * 27.42738 * 21 14 13 37 37 H 1.07999 * 120.16499 * 179.70259 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2773 2.7464 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0080 -1.2118 0.0005 8 1 3.0488 -1.2342 0.2877 9 6 1.3522 -2.4070 -0.3750 10 6 0.2217 -2.3615 -1.2129 11 6 -0.4113 -3.5290 -1.5748 12 6 0.0580 -4.7497 -1.1182 13 6 1.1752 -4.8103 -0.2885 14 7 1.6397 -6.0464 0.1667 15 6 1.6176 -6.1094 1.6396 16 6 3.0522 -6.4370 2.1048 17 6 3.6856 -7.1032 0.8551 18 1 3.4174 -8.1581 0.7969 19 6 5.2052 -6.9252 0.8500 20 7 5.7898 -7.6751 1.9697 21 6 3.0221 -6.2956 -0.2945 22 6 1.8220 -3.6476 0.0900 23 1 -0.4850 0.8401 -0.0004 24 1 -0.1482 -1.4122 -1.5711 25 1 -1.2787 -3.4930 -2.2174 26 1 -0.4457 -5.6603 -1.4072 27 1 0.9338 -6.8924 1.9671 28 1 1.3051 -5.1490 2.0497 29 1 3.5889 -5.5260 2.3695 30 1 3.0358 -7.1311 2.9450 31 1 5.6117 -7.2995 -0.0896 32 1 5.4474 -5.8677 0.9551 33 1 6.7935 -7.5738 1.9879 34 1 5.3814 -7.3911 2.8476 35 1 3.0156 -6.8807 -1.2142 36 1 3.5463 -5.3525 -0.4492 37 1 2.6854 -3.6930 0.7371 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687747265.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:11 Heat of formation + Delta-G solvation = 0.389987 kcal Electronic energy + Delta-G solvation = -17664.873221 eV Core-core repulsion = 15019.210264 eV Total energy + Delta-G solvation = -2645.662957 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.93529 -38.67425 -36.16512 -35.14357 -32.34544 -31.77463 -30.12502 -28.90371 -27.22125 -25.04440 -23.40550 -22.62021 -21.37506 -21.06300 -19.06614 -17.51776 -17.11558 -16.92350 -16.50296 -16.17559 -15.69257 -15.03854 -14.83087 -14.52776 -14.40899 -14.17823 -13.87203 -13.44393 -13.36150 -13.00525 -12.79196 -12.66493 -12.34884 -12.17413 -12.00790 -11.73053 -11.67212 -11.63090 -11.38154 -11.04696 -9.65044 -9.43650 -9.36291 -9.10583 -8.65902 -6.39327 0.95885 0.96360 1.35038 1.46270 1.51392 2.17762 2.68168 3.06039 3.44263 3.61392 3.77107 3.92647 4.01966 4.35869 4.40601 4.44713 4.53091 4.66418 4.69232 4.69531 4.83666 4.90144 4.98746 5.02650 5.05999 5.09794 5.20905 5.34065 5.39152 5.45342 5.86658 5.99811 6.01634 6.12519 6.18844 6.28963 6.48498 6.58834 6.71916 6.90222 7.05506 8.30508 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.024273 B = 0.006161 C = 0.005247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.266927 B = 4543.335055 C = 5335.459056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.038 3.962 3 Si 0.981 3.019 4 H -0.261 1.261 5 H -0.265 1.265 6 H -0.261 1.261 7 C -0.503 4.503 8 H 0.070 0.930 9 C 0.085 3.915 10 C -0.188 4.188 11 C -0.104 4.104 12 C -0.216 4.216 13 C 0.105 3.895 14 N -0.497 5.497 15 C 0.044 3.956 16 C -0.127 4.127 17 C -0.080 4.080 18 H 0.096 0.904 19 C 0.076 3.924 20 N -0.850 5.850 21 C 0.050 3.950 22 C -0.257 4.257 23 H 0.289 0.711 24 H 0.103 0.897 25 H 0.116 0.884 26 H 0.114 0.886 27 H 0.086 0.914 28 H 0.034 0.966 29 H 0.055 0.945 30 H 0.099 0.901 31 H 0.079 0.921 32 H 0.019 0.981 33 H 0.351 0.649 34 H 0.345 0.655 35 H 0.082 0.918 36 H 0.033 0.967 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.200 -8.303 2.815 11.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.177 4.177 3 Si 0.801 3.199 4 H -0.185 1.185 5 H -0.189 1.189 6 H -0.185 1.185 7 C -0.533 4.533 8 H 0.088 0.912 9 C 0.083 3.917 10 C -0.208 4.208 11 C -0.122 4.122 12 C -0.236 4.236 13 C 0.011 3.989 14 N -0.218 5.218 15 C -0.083 4.083 16 C -0.165 4.165 17 C -0.099 4.099 18 H 0.114 0.886 19 C -0.055 4.055 20 N -0.381 5.381 21 C -0.077 4.077 22 C -0.278 4.278 23 H 0.100 0.900 24 H 0.121 0.879 25 H 0.134 0.866 26 H 0.132 0.868 27 H 0.104 0.896 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.117 0.883 31 H 0.097 0.903 32 H 0.037 0.963 33 H 0.164 0.836 34 H 0.158 0.842 35 H 0.100 0.900 36 H 0.052 0.948 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.352 -9.189 2.276 11.400 hybrid contribution 0.832 2.606 0.618 2.805 sum 7.184 -6.582 2.894 10.164 Atomic orbital electron populations 1.69870 1.08966 1.30667 1.35506 1.26722 0.95478 1.04395 0.91126 0.85281 0.78855 0.75757 0.79987 1.18521 1.18927 1.18497 1.19728 0.98150 0.92631 1.42775 0.91164 1.17850 0.91896 0.92769 0.89230 1.21342 1.00105 0.97195 1.02118 1.20929 0.99084 0.92583 0.99644 1.20518 1.00149 0.96733 1.06242 1.18681 0.95449 0.87694 0.97049 1.61226 1.22278 1.28418 1.09861 1.22899 0.98355 1.00609 0.86410 1.22782 0.94401 1.00450 0.98880 1.22308 0.94294 1.00094 0.93239 0.88617 1.21602 0.93042 0.95099 0.95752 1.58699 1.10452 1.62409 1.06524 1.23225 0.86701 0.98668 0.99074 1.21355 1.04689 0.93426 1.08357 0.90042 0.87892 0.86599 0.86817 0.89617 0.94737 0.92648 0.88299 0.90284 0.96287 0.83586 0.84210 0.89976 0.94808 0.89742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.61 10.96 21.82 0.24 -43.37 16 2 C 0.04 1.93 5.14 85.25 0.44 2.37 16 3 Si 0.98 38.52 29.59 68.60 2.03 40.55 16 4 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 5 H -0.27 -9.77 7.11 99.48 0.71 -9.06 16 6 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 7 C -0.50 -27.73 9.05 23.46 0.21 -27.52 16 8 H 0.07 3.76 7.91 -2.91 -0.02 3.73 16 9 C 0.09 4.74 5.57 -21.31 -0.12 4.62 16 10 C -0.19 -10.14 8.70 22.75 0.20 -9.94 16 11 C -0.10 -4.94 10.02 22.20 0.22 -4.72 16 12 C -0.22 -9.91 9.97 22.59 0.23 -9.69 16 13 C 0.10 4.79 4.64 38.16 0.18 4.96 16 14 N -0.50 -18.75 5.16 -684.41 -3.53 -22.28 16 15 C 0.04 1.46 6.51 86.65 0.56 2.03 16 16 C -0.13 -3.31 5.60 31.78 0.18 -3.13 16 17 C -0.08 -2.01 3.31 -9.24 -0.03 -2.04 16 18 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 19 C 0.08 1.66 6.31 86.30 0.54 2.20 16 20 N -0.85 -15.22 9.62 -186.71 -1.80 -17.02 16 21 C 0.05 1.64 6.04 86.94 0.52 2.16 16 22 C -0.26 -12.96 7.53 22.86 0.17 -12.79 16 23 H 0.29 13.80 8.30 -92.71 -0.77 13.03 16 24 H 0.10 5.76 6.15 -2.91 -0.02 5.74 16 25 H 0.12 4.82 8.06 -2.91 -0.02 4.79 16 26 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 27 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 28 H 0.03 1.34 7.01 -2.38 -0.02 1.32 16 29 H 0.05 1.54 8.01 -2.39 -0.02 1.52 16 30 H 0.10 2.05 8.11 -2.39 -0.02 2.03 16 31 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.02 0.45 8.11 -2.39 -0.02 0.43 16 33 H 0.35 5.01 9.08 -89.69 -0.81 4.19 16 34 H 0.34 5.68 8.20 -89.69 -0.74 4.95 16 35 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 36 H 0.03 1.24 6.71 -2.38 -0.02 1.22 16 37 H 0.08 4.18 7.72 -2.91 -0.02 4.16 16 Total: -1.00 -60.20 299.02 -0.23 -60.43 By element: Atomic # 1 Polarization: 33.66 SS G_CDS: -0.48 Total: 33.18 kcal Atomic # 6 Polarization: -54.79 SS G_CDS: 3.31 Total: -51.48 kcal Atomic # 7 Polarization: -77.59 SS G_CDS: -5.09 Total: -82.67 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 2.03 Total: 40.55 kcal Total: -60.20 -0.23 -60.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687747265.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.819 kcal (2) G-P(sol) polarization free energy of solvation -60.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds