Wall clock time and date at job start Mon Mar 30 2020 03:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30900 * 1 3 3 Si 1.86804 * 120.00028 * 2 1 4 4 H 1.48500 * 109.47128 * 275.41351 * 3 2 1 5 5 H 1.48500 * 109.47261 * 35.41535 * 3 2 1 6 6 H 1.48496 * 109.47020 * 155.41519 * 3 2 1 7 7 C 1.39859 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99971 * 341.72002 * 7 2 1 9 9 C 1.41140 * 120.00287 * 161.72406 * 7 2 1 10 10 C 1.40885 * 120.15232 * 330.12985 * 9 7 2 11 11 C 1.36345 * 119.83478 * 179.97438 * 10 9 7 12 12 C 1.39565 * 120.16064 * 0.02562 * 11 10 9 13 13 N 1.38856 * 119.83965 * 179.97438 * 12 11 10 14 14 C 1.47899 * 110.99716 * 59.88507 * 13 12 11 15 15 C 1.53998 * 107.22475 * 214.25277 * 14 13 12 16 16 C 1.54593 * 105.13793 * 1.12060 * 15 14 13 17 17 C 1.48804 * 111.18962 * 302.54276 * 13 12 11 18 18 H 1.08997 * 110.66096 * 41.00694 * 17 13 12 19 19 C 1.53001 * 110.69974 * 278.02387 * 17 13 12 20 20 N 1.46902 * 109.47245 * 59.57096 * 19 17 13 21 21 C 1.39571 * 120.31367 * 0.24402 * 12 11 10 22 22 C 1.36329 * 120.16331 * 359.47553 * 21 12 11 23 23 H 0.97008 * 120.00002 * 0.02562 * 1 2 3 24 24 H 1.07996 * 120.08476 * 359.97438 * 10 9 7 25 25 H 1.07997 * 119.91905 * 179.97438 * 11 10 9 26 26 H 1.08992 * 109.92179 * 94.79917 * 14 13 12 27 27 H 1.08999 * 109.91595 * 333.69694 * 14 13 12 28 28 H 1.08990 * 110.31306 * 120.03826 * 15 14 13 29 29 H 1.09003 * 110.30924 * 242.20680 * 15 14 13 30 30 H 1.09000 * 110.72464 * 140.32139 * 16 15 14 31 31 H 1.08999 * 110.72775 * 263.42142 * 16 15 14 32 32 H 1.08998 * 109.47104 * 179.57572 * 19 17 13 33 33 H 1.09001 * 109.47196 * 299.56950 * 19 17 13 34 34 H 1.00895 * 110.99950 * 56.04583 * 20 19 17 35 35 H 1.00898 * 111.00227 * 180.02562 * 20 19 17 36 36 H 1.08005 * 119.91166 * 179.71716 * 21 12 11 37 37 H 1.07998 * 120.08724 * 180.27760 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 2.3761 2.1125 -1.3938 5 1 1.5024 2.6170 0.8113 6 1 3.5931 1.4098 0.5825 7 6 2.0083 -1.2112 -0.0005 8 1 1.5092 -2.1230 0.2924 9 6 3.3663 -1.2419 -0.3839 10 6 3.8594 -0.3090 -1.3174 11 6 5.1725 -0.3443 -1.6827 12 6 6.0274 -1.3017 -1.1346 13 7 7.3634 -1.3318 -1.5118 14 6 8.0348 -0.0547 -1.1867 15 6 9.0792 0.2047 -2.2883 16 6 8.9376 -0.9837 -3.2668 17 6 7.5031 -1.4963 -2.9841 18 1 6.7669 -0.8890 -3.5105 19 6 7.3680 -2.9683 -3.3790 20 7 6.0521 -3.4690 -2.9596 21 6 5.5445 -2.2325 -0.2135 22 6 4.2352 -2.2055 0.1653 23 1 -0.4850 0.8401 -0.0004 24 1 3.1990 0.4321 -1.7426 25 1 5.5519 0.3699 -2.3985 26 1 8.5281 -0.1305 -0.2178 27 1 7.3048 0.7546 -1.1693 28 1 8.8649 1.1432 -2.7994 29 1 10.0820 0.2259 -1.8615 30 1 9.0303 -0.6466 -4.2992 31 1 9.6760 -1.7547 -3.0467 32 1 7.4658 -3.0648 -4.4603 33 1 8.1503 -3.5489 -2.8902 34 1 5.3104 -2.9063 -3.3485 35 1 5.9385 -4.4401 -3.2090 36 1 6.2108 -2.9734 0.2031 37 1 3.8639 -2.9235 0.8815 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687748515.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:00 Heat of formation + Delta-G solvation = 27.775594 kcal Electronic energy + Delta-G solvation = -18165.098624 eV Core-core repulsion = 15520.623196 eV Total energy + Delta-G solvation = -2644.475428 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.51471 -37.00356 -33.92913 -33.57597 -31.74503 -29.74899 -28.71722 -28.61717 -24.58201 -23.43298 -21.51042 -21.07991 -20.49971 -19.22679 -17.31911 -16.70112 -15.61059 -15.21547 -14.70251 -14.38446 -13.83521 -13.67506 -13.60968 -13.27199 -12.75446 -12.45236 -12.28532 -12.19510 -11.68467 -11.53567 -11.20964 -11.05928 -10.74728 -10.71989 -10.56873 -10.34405 -10.13278 -9.90272 -9.55702 -9.08407 -8.20310 -7.76269 -7.63211 -7.20820 -6.88897 -4.36883 2.61720 2.90493 3.13814 3.25248 3.36213 4.03172 4.46571 4.53884 4.74357 4.98638 5.18108 5.23108 5.42596 5.54907 5.61871 5.71244 5.79915 5.90052 5.93360 6.04529 6.06899 6.20420 6.27124 6.36994 6.40449 6.65352 6.94110 7.03500 7.15253 7.35639 7.39064 7.60391 7.63422 7.85681 7.86027 7.97140 8.21051 8.39350 8.50707 8.82504 8.92024 10.14006 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.030675 B = 0.007248 C = 0.006468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.570850 B = 3862.347814 C = 4327.871615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.084 3.916 3 Si 0.913 3.087 4 H -0.274 1.274 5 H -0.293 1.293 6 H -0.245 1.245 7 C -0.448 4.448 8 H 0.089 0.911 9 C 0.095 3.905 10 C -0.233 4.233 11 C -0.107 4.107 12 C -0.031 4.031 13 N -0.447 5.447 14 C 0.034 3.966 15 C -0.130 4.130 16 C -0.119 4.119 17 C 0.067 3.933 18 H 0.049 0.951 19 C 0.085 3.915 20 N -0.829 5.829 21 C -0.020 4.020 22 C -0.210 4.210 23 H 0.283 0.717 24 H 0.094 0.906 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.044 0.956 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.015 0.985 33 H 0.071 0.929 34 H 0.341 0.659 35 H 0.330 0.670 36 H 0.095 0.905 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.195 -0.364 -5.938 14.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.134 4.134 3 Si 0.740 3.260 4 H -0.201 1.201 5 H -0.221 1.221 6 H -0.168 1.168 7 C -0.477 4.477 8 H 0.107 0.893 9 C 0.092 3.908 10 C -0.252 4.252 11 C -0.127 4.127 12 C -0.126 4.126 13 N -0.168 5.168 14 C -0.093 4.093 15 C -0.168 4.168 16 C -0.157 4.157 17 C -0.041 4.041 18 H 0.067 0.933 19 C -0.046 4.046 20 N -0.358 5.358 21 C -0.039 4.039 22 C -0.230 4.230 23 H 0.093 0.907 24 H 0.112 0.888 25 H 0.100 0.900 26 H 0.089 0.911 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.033 0.967 33 H 0.090 0.910 34 H 0.154 0.846 35 H 0.142 0.858 36 H 0.113 0.887 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 13.398 -0.542 -4.888 14.272 hybrid contribution -0.470 1.405 -1.566 2.156 sum 12.929 0.863 -6.454 14.476 Atomic orbital electron populations 1.69743 1.08044 1.30002 1.36077 1.26138 0.94654 1.01643 0.90964 0.86302 0.81295 0.79931 0.78502 1.20052 1.22087 1.16850 1.19438 0.93471 0.95956 1.38830 0.89323 1.17728 0.92855 0.90912 0.89321 1.20577 0.95353 1.04856 1.04460 1.20722 0.94684 0.97993 0.99329 1.17932 0.87561 1.01252 1.05835 1.61855 1.13338 1.30324 1.11288 1.22974 0.95998 0.91907 0.98398 1.22380 0.99539 0.97988 0.96866 1.22470 0.96927 0.97875 0.98460 1.22905 0.95298 0.95664 0.90226 0.93304 1.21606 0.92796 0.94900 0.95325 1.58540 1.03112 1.06105 1.68033 1.20020 0.94356 0.95060 0.94481 1.20688 0.93208 1.04213 1.04936 0.90675 0.88849 0.90036 0.91076 0.93741 0.92104 0.91486 0.91827 0.90940 0.96690 0.91044 0.84585 0.85782 0.88680 0.88445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.10 13.93 55.54 0.77 -21.33 16 2 C 0.08 2.24 5.40 -17.34 -0.09 2.15 16 3 Si 0.91 21.41 24.51 -169.99 -4.17 17.25 16 4 H -0.27 -6.28 6.70 56.52 0.38 -5.90 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 6 H -0.25 -5.93 6.87 56.52 0.39 -5.54 16 7 C -0.45 -12.28 9.55 -37.87 -0.36 -12.64 16 8 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 9 C 0.09 2.41 5.10 -106.79 -0.55 1.87 16 10 C -0.23 -5.64 7.11 -39.26 -0.28 -5.92 16 11 C -0.11 -2.33 7.80 -39.77 -0.31 -2.64 16 12 C -0.03 -0.63 3.45 -83.69 -0.29 -0.92 16 13 N -0.45 -7.84 4.96 -159.41 -0.79 -8.63 16 14 C 0.03 0.54 6.49 -2.75 -0.02 0.53 16 15 C -0.13 -1.61 6.93 -25.37 -0.18 -1.78 16 16 C -0.12 -1.44 6.50 -24.87 -0.16 -1.60 16 17 C 0.07 1.01 2.56 -65.63 -0.17 0.84 16 18 H 0.05 0.81 6.63 -51.93 -0.34 0.46 16 19 C 0.09 1.18 6.55 -3.82 -0.03 1.15 16 20 N -0.83 -12.62 7.63 -10.37 -0.08 -12.70 16 21 C -0.02 -0.43 9.33 -39.77 -0.37 -0.80 16 22 C -0.21 -4.95 9.74 -39.27 -0.38 -5.34 16 23 H 0.28 6.98 8.30 -40.82 -0.34 6.64 16 24 H 0.09 2.30 4.73 -52.49 -0.25 2.06 16 25 H 0.08 1.65 7.03 -52.49 -0.37 1.28 16 26 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.04 0.77 6.66 -51.93 -0.35 0.42 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.83 8.03 -51.93 -0.42 0.42 16 32 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 34 H 0.34 5.58 8.94 -39.29 -0.35 5.23 16 35 H 0.33 4.29 9.08 -39.29 -0.36 3.93 16 36 H 0.10 1.95 8.06 -52.48 -0.42 1.53 16 37 H 0.10 2.21 8.06 -52.49 -0.42 1.78 16 LS Contribution 290.59 15.07 4.38 4.38 Total: -1.00 -27.62 290.59 -8.47 -36.09 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -5.41 Total: 10.06 kcal Atomic # 6 Polarization: -21.94 SS G_CDS: -3.18 Total: -25.12 kcal Atomic # 7 Polarization: -42.56 SS G_CDS: -0.10 Total: -42.66 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.17 Total: 17.25 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -27.62 -8.47 -36.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687748515.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.868 kcal (2) G-P(sol) polarization free energy of solvation -27.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds