Wall clock time and date at job start Mon Mar 30 2020 04:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.49026 * 2 1 4 4 C 1.53059 * 109.48858 * 239.96264 * 2 1 3 5 5 N 1.46951 * 109.36303 * 181.61153 * 4 2 1 6 6 C 1.46954 * 110.88625 * 59.31742 * 5 4 2 7 7 C 1.53050 * 109.36560 * 300.68112 * 6 5 4 8 8 N 1.46954 * 109.51064 * 120.05824 * 2 1 3 9 9 C 1.39683 * 111.00141 * 303.16748 * 8 2 1 10 10 C 1.39339 * 119.94745 * 298.40191 * 9 8 2 11 11 C 1.38482 * 120.42211 * 179.75996 * 10 9 8 12 12 C 1.37687 * 120.32404 * 0.51798 * 11 10 9 13 13 C 1.40755 * 119.89434 * 359.73995 * 12 11 10 14 14 C 1.41405 * 120.20574 * 179.97438 * 13 12 11 15 15 H 1.07994 * 119.99703 * 205.35838 * 14 13 12 16 16 C 1.39934 * 120.00240 * 25.36682 * 14 13 12 17 17 N 1.30830 * 119.99917 * 18.85548 * 16 14 13 18 18 Si 1.86797 * 120.00128 * 198.85340 * 16 14 13 19 19 H 1.48509 * 109.46961 * 59.99729 * 18 16 14 20 20 H 1.48497 * 109.47338 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46965 * 300.00225 * 18 16 14 22 22 C 1.38274 * 119.95238 * 118.67330 * 9 8 2 23 23 H 1.08994 * 109.47075 * 183.43837 * 1 2 3 24 24 H 1.08999 * 109.46593 * 303.43747 * 1 2 3 25 25 H 1.08994 * 109.46872 * 63.43765 * 1 2 3 26 26 H 1.08998 * 109.48504 * 301.57419 * 4 2 1 27 27 H 1.08991 * 109.48873 * 61.64068 * 4 2 1 28 28 H 1.00901 * 110.99612 * 183.18446 * 5 4 2 29 29 H 1.09007 * 109.48823 * 60.64770 * 6 5 4 30 30 H 1.09001 * 109.49379 * 180.68954 * 6 5 4 31 31 H 1.08993 * 109.48995 * 178.37095 * 7 6 5 32 32 H 1.09005 * 109.48304 * 298.41214 * 7 6 5 33 33 H 1.07993 * 119.78699 * 0.02562 * 10 9 8 34 34 H 1.07994 * 119.83746 * 180.25841 * 11 10 9 35 35 H 1.08005 * 120.05460 * 179.72264 * 12 11 10 36 36 H 0.96997 * 120.00034 * 180.02562 * 17 16 14 37 37 H 1.08000 * 120.16557 * 0.02562 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0406 -0.7223 -1.2491 5 7 3.5096 -0.7545 -1.2270 6 6 4.0004 -1.4483 -0.0281 7 6 3.4898 -0.7261 1.2210 8 7 2.0208 -0.6938 1.1989 9 6 1.5155 -0.1047 2.3603 10 6 1.8167 1.2236 2.6541 11 6 1.3170 1.8190 3.8002 12 6 0.5251 1.1008 4.6680 13 6 0.2168 -0.2436 4.3871 14 6 -0.5954 -0.9875 5.2740 15 1 -0.5108 -2.0635 5.3098 16 6 -1.5087 -0.3294 6.1052 17 7 -1.8855 0.8918 5.8255 18 14 -2.1901 -1.1947 7.6139 19 1 -1.0733 -1.5565 8.5236 20 1 -3.1305 -0.2891 8.3215 21 1 -2.9074 -2.4261 7.1966 22 6 0.7219 -0.8423 3.2194 23 1 -0.3633 -1.0258 0.0616 24 1 -0.3632 0.5663 0.8576 25 1 -0.3633 0.4595 -0.9192 26 1 1.6547 -1.7416 -1.2630 27 1 1.7018 -0.1926 -2.1394 28 1 3.8746 -1.1801 -2.0659 29 1 3.6368 -2.4759 -0.0282 30 1 5.0904 -1.4483 -0.0285 31 1 3.8287 -1.2557 2.1113 32 1 3.8761 0.2931 1.2350 33 1 2.4402 1.7938 1.9816 34 1 1.5529 2.8504 4.0166 35 1 0.1414 1.5681 5.5629 36 1 -2.5184 1.3481 6.4018 37 1 0.4918 -1.8733 2.9952 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687810089.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:45 Heat of formation + Delta-G solvation = 8.825999 kcal Electronic energy + Delta-G solvation = -17977.668881 eV Core-core repulsion = 15332.371737 eV Total energy + Delta-G solvation = -2645.297144 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.96592 -38.70211 -36.01642 -34.69204 -33.38895 -31.76895 -30.25308 -28.11007 -27.14388 -25.79652 -23.26004 -22.75524 -22.15481 -20.47923 -19.03949 -17.59396 -17.12151 -16.58184 -16.37431 -16.04157 -15.76091 -15.61894 -14.99438 -14.60960 -14.33717 -14.08302 -13.43053 -13.40104 -12.99451 -12.97912 -12.83053 -12.76594 -12.50072 -12.25392 -12.12485 -11.92270 -11.87617 -11.46323 -11.34799 -11.01324 -9.52742 -9.42186 -9.24866 -9.10733 -8.65395 -6.35718 0.93673 1.04567 1.38300 1.49272 1.53545 2.21009 2.69828 2.96750 3.26714 3.68176 3.89909 4.07390 4.26089 4.33638 4.36869 4.41422 4.47168 4.58479 4.69569 4.80834 4.82268 4.95466 4.96350 5.03750 5.07835 5.10819 5.22484 5.31046 5.37804 5.60403 5.89659 5.90018 6.00123 6.12557 6.15436 6.20388 6.50791 6.57769 6.80063 6.94360 7.05312 8.32884 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.038922 B = 0.005604 C = 0.005550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.214838 B = 4994.919017 C = 5043.628990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.089 3.911 3 H 0.033 0.967 4 C 0.072 3.928 5 N -0.695 5.695 6 C 0.068 3.932 7 C 0.060 3.940 8 N -0.505 5.505 9 C 0.123 3.877 10 C -0.264 4.264 11 C -0.099 4.099 12 C -0.192 4.192 13 C 0.088 3.912 14 C -0.501 4.501 15 H 0.075 0.925 16 C 0.039 3.961 17 N -0.824 5.824 18 Si 0.981 3.019 19 H -0.261 1.261 20 H -0.267 1.267 21 H -0.259 1.259 22 C -0.210 4.210 23 H 0.054 0.946 24 H 0.029 0.971 25 H 0.083 0.917 26 H 0.038 0.962 27 H 0.099 0.901 28 H 0.358 0.642 29 H 0.038 0.962 30 H 0.101 0.899 31 H 0.069 0.931 32 H 0.031 0.969 33 H 0.098 0.902 34 H 0.107 0.893 35 H 0.099 0.901 36 H 0.289 0.711 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.202 -2.669 -9.568 11.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.019 4.019 3 H 0.051 0.949 4 C -0.058 4.058 5 N -0.328 5.328 6 C -0.062 4.062 7 C -0.067 4.067 8 N -0.227 5.227 9 C 0.030 3.970 10 C -0.286 4.286 11 C -0.117 4.117 12 C -0.212 4.212 13 C 0.086 3.914 14 C -0.530 4.530 15 H 0.093 0.907 16 C -0.177 4.177 17 N -0.450 5.450 18 Si 0.802 3.198 19 H -0.185 1.185 20 H -0.191 1.191 21 H -0.184 1.184 22 C -0.230 4.230 23 H 0.073 0.927 24 H 0.049 0.951 25 H 0.102 0.898 26 H 0.057 0.943 27 H 0.117 0.883 28 H 0.178 0.822 29 H 0.056 0.944 30 H 0.119 0.881 31 H 0.087 0.913 32 H 0.050 0.950 33 H 0.116 0.884 34 H 0.125 0.875 35 H 0.117 0.883 36 H 0.099 0.901 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.948 -2.351 -9.281 11.271 hybrid contribution -0.460 -0.135 0.771 0.907 sum 5.489 -2.486 -8.510 10.427 Atomic orbital electron populations 1.21708 0.94224 1.01870 1.01586 1.21688 0.95263 0.95402 0.89530 0.94890 1.21990 0.87854 0.99225 0.96693 1.60441 1.08346 1.58443 1.05572 1.21960 1.00391 0.95052 0.88762 1.22187 0.86210 0.99445 0.98831 1.59927 1.08749 1.53468 1.00603 1.18306 0.96338 0.91252 0.91149 1.20914 1.10178 0.96363 1.01107 1.20789 0.97538 0.98434 0.94987 1.21218 1.02941 0.96190 1.00825 1.17861 0.90168 0.92620 0.90799 1.19762 1.18761 0.95027 1.19431 0.90735 1.26733 0.95000 0.95371 1.00563 1.69881 1.25405 1.13745 1.35956 0.85274 0.78481 0.78980 0.77109 1.18508 1.19091 1.18356 1.20864 1.06795 0.99351 0.96007 0.92661 0.95131 0.89794 0.94344 0.88298 0.82184 0.94365 0.88081 0.91290 0.95025 0.88369 0.87486 0.88293 0.90082 0.89123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.57 8.94 71.98 0.64 -3.92 16 2 C 0.09 2.92 2.30 44.92 0.10 3.02 16 3 H 0.03 1.18 7.31 -2.39 -0.02 1.16 16 4 C 0.07 1.79 6.00 86.31 0.52 2.31 16 5 N -0.70 -15.73 6.90 -513.44 -3.54 -19.27 16 6 C 0.07 1.65 6.72 86.31 0.58 2.23 16 7 C 0.06 1.97 5.34 86.31 0.46 2.43 16 8 N -0.50 -19.08 4.50 -671.13 -3.02 -22.10 16 9 C 0.12 5.58 3.22 38.16 0.12 5.70 16 10 C -0.26 -12.06 8.64 22.59 0.20 -11.87 16 11 C -0.10 -4.76 10.02 22.20 0.22 -4.54 16 12 C -0.19 -10.42 8.69 22.76 0.20 -10.22 16 13 C 0.09 4.92 5.56 -21.31 -0.12 4.80 16 14 C -0.50 -27.64 9.04 23.46 0.21 -27.42 16 15 H 0.07 3.99 7.91 -2.91 -0.02 3.96 16 16 C 0.04 1.98 5.11 85.25 0.44 2.41 16 17 N -0.82 -43.83 11.08 21.82 0.24 -43.59 16 18 Si 0.98 38.69 29.60 68.60 2.03 40.72 16 19 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 20 H -0.27 -9.89 7.11 99.48 0.71 -9.18 16 21 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 22 C -0.21 -10.78 9.71 22.86 0.22 -10.56 16 23 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 24 H 0.03 1.24 7.27 -2.39 -0.02 1.22 16 25 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 26 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.36 5.90 8.90 -89.69 -0.80 5.10 16 29 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 30 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.07 2.32 8.13 -2.39 -0.02 2.30 16 32 H 0.03 1.08 7.34 -2.38 -0.02 1.07 16 33 H 0.10 4.14 7.03 -2.91 -0.02 4.12 16 34 H 0.11 4.60 8.06 -2.91 -0.02 4.57 16 35 H 0.10 5.57 6.26 -2.91 -0.02 5.55 16 36 H 0.29 13.86 8.30 -92.71 -0.77 13.09 16 37 H 0.09 4.64 8.06 -2.91 -0.02 4.62 16 Total: -1.00 -60.79 296.10 -0.24 -61.03 By element: Atomic # 1 Polarization: 28.61 SS G_CDS: 0.26 Total: 28.87 kcal Atomic # 6 Polarization: -49.45 SS G_CDS: 3.79 Total: -45.65 kcal Atomic # 7 Polarization: -78.64 SS G_CDS: -6.32 Total: -84.96 kcal Atomic # 14 Polarization: 38.69 SS G_CDS: 2.03 Total: 40.72 kcal Total: -60.79 -0.24 -61.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687810089.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.858 kcal (2) G-P(sol) polarization free energy of solvation -60.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds