Wall clock time and date at job start Mon Mar 30 2020 03:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99333 * 2 1 4 4 H 1.48505 * 109.46770 * 269.99258 * 3 2 1 5 5 H 1.48491 * 109.47758 * 29.99564 * 3 2 1 6 6 H 1.48501 * 109.46617 * 149.99937 * 3 2 1 7 7 C 1.37874 * 120.00393 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99511 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00068 * 180.02562 * 7 2 1 10 10 N 1.42992 * 109.47011 * 174.97205 * 9 7 2 11 11 C 1.46344 * 120.12804 * 312.54887 * 10 9 7 12 12 C 1.53927 * 109.68471 * 299.37307 * 11 10 9 13 13 H 1.10292 * 107.18815 * 200.83007 * 12 11 10 14 14 N 1.46450 * 110.73776 * 83.37400 * 12 11 10 15 15 C 1.52096 * 111.41248 * 319.15160 * 12 11 10 16 16 C 1.52764 * 108.54201 * 309.36288 * 15 12 11 17 17 C 1.50726 * 110.93046 * 89.18674 * 16 15 12 18 18 C 1.39054 * 116.73216 * 144.37113 * 17 16 15 19 19 C 1.37878 * 120.71129 * 179.97438 * 18 17 16 20 20 C 1.38289 * 119.68513 * 359.90819 * 19 18 17 21 21 C 1.37648 * 119.87765 * 0.05253 * 20 19 18 22 22 C 1.37621 * 123.33696 * 324.35446 * 17 16 15 23 23 H 0.97001 * 120.00349 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47229 * 54.96782 * 9 7 2 25 25 H 1.09006 * 109.46838 * 294.96816 * 9 7 2 26 26 H 1.09225 * 109.93565 * 59.14629 * 11 10 9 27 27 H 1.09163 * 110.04637 * 179.35952 * 11 10 9 28 28 H 1.00896 * 111.00297 * 179.97438 * 14 12 11 29 29 H 1.00893 * 111.00013 * 303.95859 * 14 12 11 30 30 H 1.08601 * 111.49371 * 70.89695 * 15 12 11 31 31 H 1.09712 * 109.34418 * 190.77989 * 15 12 11 32 32 H 1.09082 * 109.05525 * 209.35892 * 16 15 12 33 33 H 1.08944 * 109.34243 * 328.54003 * 16 15 12 34 34 H 1.08028 * 119.50480 * 359.91117 * 18 17 16 35 35 H 1.07995 * 120.19903 * 180.02562 * 19 18 17 36 36 H 1.08032 * 120.00356 * 180.02562 * 20 19 18 37 37 H 1.08020 * 119.67119 * 180.39175 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4464 2.6528 0.6999 6 1 3.5465 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 7 3.9882 -2.5368 0.1198 11 6 3.4257 -3.4289 1.1343 12 6 3.6708 -2.8406 2.5354 13 1 3.5909 -3.6715 3.2564 14 7 2.6422 -1.8535 2.8705 15 6 5.0639 -2.2411 2.6500 16 6 6.0786 -3.2732 2.1613 17 6 6.3098 -3.1403 0.6778 18 6 7.6012 -3.3810 0.2219 19 6 7.9041 -3.2831 -1.1196 20 6 6.9131 -2.9438 -2.0225 21 6 5.6326 -2.7051 -1.5775 22 6 5.3188 -2.8002 -0.2146 23 1 -0.4851 0.8400 -0.0004 24 1 3.8745 -0.6038 0.8426 25 1 3.8752 -0.7603 -0.9305 26 1 2.3502 -3.5385 0.9789 27 1 3.8979 -4.4112 1.0721 28 1 2.7988 -1.4654 3.7886 29 1 2.5983 -1.1260 2.1728 30 1 5.1522 -1.3261 2.0718 31 1 5.2741 -2.0084 3.7014 32 1 7.0232 -3.1195 2.6847 33 1 5.7091 -4.2743 2.3803 34 1 8.3740 -3.6464 0.9286 35 1 8.9099 -3.4722 -1.4646 36 1 7.1447 -2.8660 -3.0748 37 1 4.8597 -2.4465 -2.2864 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000696378420.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:15 Heat of formation + Delta-G solvation = 34.739533 kcal Electronic energy + Delta-G solvation = -18645.633223 eV Core-core repulsion = 16001.459774 eV Total energy + Delta-G solvation = -2644.173449 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.02555 -37.10017 -34.53044 -32.75420 -32.29170 -29.77859 -28.75326 -28.38629 -25.34004 -23.98616 -22.40193 -21.31568 -20.06093 -19.13013 -17.06258 -16.12782 -15.99495 -15.45543 -14.87225 -14.56488 -14.15237 -13.78746 -13.61219 -13.22079 -12.92347 -12.55011 -12.24922 -12.02039 -11.94968 -11.59650 -11.24889 -11.08966 -10.92510 -10.78306 -10.56890 -10.47257 -10.25159 -9.92691 -9.32787 -8.65355 -8.55788 -8.36116 -7.86324 -6.79029 -6.10945 -4.09059 1.74932 1.82674 3.21873 3.29626 3.32039 4.13207 4.33089 4.39162 4.97845 5.10179 5.17153 5.29574 5.31103 5.37295 5.43922 5.55232 5.78689 5.82615 5.93315 5.96292 6.03824 6.14762 6.23631 6.30441 6.41665 6.55024 6.62737 6.81327 6.82895 6.88280 6.96083 7.02233 7.29862 7.51051 7.98799 8.16476 8.27460 8.40140 8.73572 9.00813 9.48642 11.01226 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.023627 B = 0.009091 C = 0.007597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.820767 B = 3079.262657 C = 3684.852620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.077 3.923 3 Si 0.862 3.138 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.512 4.512 8 H 0.087 0.913 9 C 0.220 3.780 10 N -0.580 5.580 11 C 0.121 3.879 12 C 0.068 3.932 13 H 0.061 0.939 14 N -0.838 5.838 15 C -0.150 4.150 16 C -0.067 4.067 17 C -0.132 4.132 18 C -0.106 4.106 19 C -0.155 4.155 20 C -0.112 4.112 21 C -0.136 4.136 22 C 0.177 3.823 23 H 0.264 0.736 24 H -0.014 1.014 25 H 0.023 0.977 26 H 0.094 0.906 27 H 0.060 0.940 28 H 0.318 0.682 29 H 0.368 0.632 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.252 -5.213 2.414 14.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.126 4.126 3 Si 0.689 3.311 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.550 4.550 8 H 0.105 0.895 9 C 0.097 3.903 10 N -0.295 5.295 11 C -0.004 4.004 12 C -0.047 4.047 13 H 0.079 0.921 14 N -0.372 5.372 15 C -0.190 4.190 16 C -0.105 4.105 17 C -0.135 4.135 18 C -0.125 4.125 19 C -0.174 4.174 20 C -0.130 4.130 21 C -0.157 4.157 22 C 0.079 3.921 23 H 0.074 0.926 24 H 0.004 0.996 25 H 0.040 0.960 26 H 0.112 0.888 27 H 0.079 0.921 28 H 0.129 0.871 29 H 0.190 0.810 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.133 0.867 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 12.288 -5.712 2.142 13.719 hybrid contribution 1.524 1.863 0.440 2.447 sum 13.812 -3.849 2.583 14.569 Atomic orbital electron populations 1.69873 1.05963 1.26804 1.49915 1.24819 0.94644 0.98328 0.94807 0.87082 0.80344 0.84753 0.78925 1.20010 1.21011 1.19312 1.21050 0.88224 0.95047 1.50723 0.89504 1.19036 0.96441 0.79855 0.94930 1.49595 1.11391 1.17118 1.51389 1.21746 1.01217 0.91931 0.85537 1.22184 0.88095 0.95565 0.98832 0.92103 1.59098 1.48174 1.22823 1.07100 1.22314 0.96944 0.99384 1.00355 1.20368 0.99020 0.99510 0.91600 1.19902 0.92863 1.05755 0.95024 1.20988 0.95364 1.00499 0.95611 1.20818 0.98882 1.04224 0.93503 1.20885 0.93123 0.99928 0.99096 1.21561 0.96746 1.02297 0.95069 1.18087 0.86283 0.95689 0.91992 0.92552 0.99644 0.95955 0.88792 0.92123 0.87104 0.80998 0.91521 0.92797 0.91902 0.91196 0.87018 0.86936 0.86704 0.85780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.98 13.96 55.43 0.77 -25.21 16 2 C 0.08 2.11 5.44 -17.82 -0.10 2.01 16 3 Si 0.86 20.55 27.57 -169.99 -4.69 15.86 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.21 6.40 56.52 0.36 -5.84 16 7 C -0.51 -13.53 7.20 -34.44 -0.25 -13.77 16 8 H 0.09 2.54 6.67 -52.49 -0.35 2.19 16 9 C 0.22 5.10 3.35 -7.04 -0.02 5.08 16 10 N -0.58 -11.86 2.81 -175.22 -0.49 -12.35 16 11 C 0.12 2.31 4.93 -3.64 -0.02 2.30 16 12 C 0.07 1.18 2.68 -67.93 -0.18 1.00 16 13 H 0.06 0.97 8.25 -51.19 -0.42 0.55 16 14 N -0.84 -16.44 9.24 -4.49 -0.04 -16.48 16 15 C -0.15 -2.42 5.06 -27.31 -0.14 -2.55 16 16 C -0.07 -0.97 5.15 -27.99 -0.14 -1.11 16 17 C -0.13 -2.14 5.37 -104.53 -0.56 -2.70 16 18 C -0.11 -1.51 9.51 -39.41 -0.37 -1.88 16 19 C -0.16 -2.12 10.05 -39.69 -0.40 -2.52 16 20 C -0.11 -1.64 10.03 -39.78 -0.40 -2.04 16 21 C -0.14 -2.38 9.22 -39.07 -0.36 -2.74 16 22 C 0.18 3.28 4.93 -83.77 -0.41 2.87 16 23 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 24 H -0.01 -0.32 4.11 -51.93 -0.21 -0.54 16 25 H 0.02 0.54 7.30 -51.93 -0.38 0.16 16 26 H 0.09 2.03 6.63 -51.80 -0.34 1.68 16 27 H 0.06 1.04 7.28 -51.84 -0.38 0.66 16 28 H 0.32 5.45 9.01 -39.29 -0.35 5.10 16 29 H 0.37 8.25 4.69 -39.30 -0.18 8.07 16 30 H 0.07 1.25 5.82 -52.15 -0.30 0.95 16 31 H 0.05 0.77 8.20 -51.53 -0.42 0.35 16 32 H 0.06 0.79 7.84 -51.88 -0.41 0.38 16 33 H 0.07 0.95 7.39 -51.96 -0.38 0.56 16 34 H 0.11 1.31 7.90 -52.47 -0.41 0.90 16 35 H 0.11 1.24 8.06 -52.49 -0.42 0.82 16 36 H 0.11 1.41 8.06 -52.47 -0.42 0.99 16 37 H 0.12 2.23 8.02 -52.48 -0.42 1.81 16 LS Contribution 280.65 15.07 4.23 4.23 Total: -1.00 -28.19 280.65 -8.57 -36.76 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -5.00 Total: 13.26 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: -3.36 Total: -16.07 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: 0.24 Total: -54.04 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.69 Total: 15.86 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.19 -8.57 -36.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696378420.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.504 kcal (2) G-P(sol) polarization free energy of solvation -28.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds