Wall clock time and date at job start Mon Mar 30 2020 03:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99333 * 2 1 4 4 H 1.48505 * 109.46770 * 269.99258 * 3 2 1 5 5 H 1.48491 * 109.47758 * 29.99564 * 3 2 1 6 6 H 1.48501 * 109.46617 * 149.99937 * 3 2 1 7 7 C 1.37874 * 120.00393 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99511 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00068 * 180.02562 * 7 2 1 10 10 N 1.42992 * 109.47011 * 174.97205 * 9 7 2 11 11 C 1.46344 * 120.12804 * 312.54887 * 10 9 7 12 12 C 1.53927 * 109.68471 * 299.37307 * 11 10 9 13 13 H 1.10292 * 107.18815 * 200.83007 * 12 11 10 14 14 N 1.46450 * 110.73776 * 83.37400 * 12 11 10 15 15 C 1.52096 * 111.41248 * 319.15160 * 12 11 10 16 16 C 1.52764 * 108.54201 * 309.36288 * 15 12 11 17 17 C 1.50726 * 110.93046 * 89.18674 * 16 15 12 18 18 C 1.39054 * 116.73216 * 144.37113 * 17 16 15 19 19 C 1.37878 * 120.71129 * 179.97438 * 18 17 16 20 20 C 1.38289 * 119.68513 * 359.90819 * 19 18 17 21 21 C 1.37648 * 119.87765 * 0.05253 * 20 19 18 22 22 C 1.37621 * 123.33696 * 324.35446 * 17 16 15 23 23 H 0.97001 * 120.00349 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47229 * 54.96782 * 9 7 2 25 25 H 1.09006 * 109.46838 * 294.96816 * 9 7 2 26 26 H 1.09225 * 109.93565 * 59.14629 * 11 10 9 27 27 H 1.09163 * 110.04637 * 179.35952 * 11 10 9 28 28 H 1.00896 * 111.00297 * 179.97438 * 14 12 11 29 29 H 1.00893 * 111.00013 * 303.95859 * 14 12 11 30 30 H 1.08601 * 111.49371 * 70.89695 * 15 12 11 31 31 H 1.09712 * 109.34418 * 190.77989 * 15 12 11 32 32 H 1.09082 * 109.05525 * 209.35892 * 16 15 12 33 33 H 1.08944 * 109.34243 * 328.54003 * 16 15 12 34 34 H 1.08028 * 119.50480 * 359.91117 * 18 17 16 35 35 H 1.07995 * 120.19903 * 180.02562 * 19 18 17 36 36 H 1.08032 * 120.00356 * 180.02562 * 20 19 18 37 37 H 1.08020 * 119.67119 * 180.39175 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4464 2.6528 0.6999 6 1 3.5465 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 7 3.9882 -2.5368 0.1198 11 6 3.4257 -3.4289 1.1343 12 6 3.6708 -2.8406 2.5354 13 1 3.5909 -3.6715 3.2564 14 7 2.6422 -1.8535 2.8705 15 6 5.0639 -2.2411 2.6500 16 6 6.0786 -3.2732 2.1613 17 6 6.3098 -3.1403 0.6778 18 6 7.6012 -3.3810 0.2219 19 6 7.9041 -3.2831 -1.1196 20 6 6.9131 -2.9438 -2.0225 21 6 5.6326 -2.7051 -1.5775 22 6 5.3188 -2.8002 -0.2146 23 1 -0.4851 0.8400 -0.0004 24 1 3.8745 -0.6038 0.8426 25 1 3.8752 -0.7603 -0.9305 26 1 2.3502 -3.5385 0.9789 27 1 3.8979 -4.4112 1.0721 28 1 2.7988 -1.4654 3.7886 29 1 2.5983 -1.1260 2.1728 30 1 5.1522 -1.3261 2.0718 31 1 5.2741 -2.0084 3.7014 32 1 7.0232 -3.1195 2.6847 33 1 5.7091 -4.2743 2.3803 34 1 8.3740 -3.6464 0.9286 35 1 8.9099 -3.4722 -1.4646 36 1 7.1447 -2.8660 -3.0748 37 1 4.8597 -2.4465 -2.2864 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000696378420.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:14 Heat of formation + Delta-G solvation = 16.566013 kcal Electronic energy + Delta-G solvation = -18646.421286 eV Core-core repulsion = 16001.459774 eV Total energy + Delta-G solvation = -2644.961512 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.35732 -38.42559 -36.02689 -34.58687 -33.75520 -31.19218 -30.11156 -30.04240 -26.96916 -25.25391 -24.00416 -22.68838 -21.33489 -20.60634 -18.99787 -17.56354 -17.44306 -16.87143 -16.36130 -16.21034 -15.46578 -15.27742 -15.02370 -14.60541 -14.50675 -14.22617 -13.74675 -13.41750 -13.24212 -13.02974 -12.86637 -12.56374 -12.40289 -12.37039 -12.00296 -11.95014 -11.76961 -11.54781 -11.28544 -10.76667 -9.90372 -9.53292 -9.35188 -8.29579 -8.23492 -6.26366 0.56978 0.61258 1.31116 1.33492 1.41218 2.31507 2.84447 2.98806 3.08108 3.77747 3.81598 4.02404 4.06149 4.15746 4.30019 4.37547 4.43944 4.57413 4.67868 4.72935 4.78381 4.82522 4.89463 4.97696 5.02199 5.08458 5.23773 5.26089 5.38557 5.48204 5.65238 5.72519 5.79080 6.07887 6.24055 6.51078 6.63440 6.78970 6.85306 7.09314 7.36360 8.91096 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.023627 B = 0.009091 C = 0.007597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.820767 B = 3079.262657 C = 3684.852620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.026 3.974 3 Si 0.926 3.074 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.256 1.256 7 C -0.500 4.500 8 H 0.045 0.955 9 C 0.239 3.761 10 N -0.593 5.593 11 C 0.125 3.875 12 C 0.068 3.932 13 H 0.082 0.918 14 N -0.856 5.856 15 C -0.143 4.143 16 C -0.064 4.064 17 C -0.137 4.137 18 C -0.104 4.104 19 C -0.145 4.145 20 C -0.111 4.111 21 C -0.161 4.161 22 C 0.144 3.856 23 H 0.266 0.734 24 H -0.016 1.016 25 H 0.013 0.987 26 H 0.054 0.946 27 H 0.080 0.920 28 H 0.332 0.668 29 H 0.352 0.648 30 H 0.037 0.963 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.146 0.854 35 H 0.149 0.851 36 H 0.138 0.862 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.117 -5.554 3.247 18.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.173 4.173 3 Si 0.751 3.249 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.180 1.180 7 C -0.539 4.539 8 H 0.063 0.937 9 C 0.116 3.884 10 N -0.310 5.310 11 C -0.001 4.001 12 C -0.045 4.045 13 H 0.100 0.900 14 N -0.389 5.389 15 C -0.182 4.182 16 C -0.102 4.102 17 C -0.141 4.141 18 C -0.122 4.122 19 C -0.163 4.163 20 C -0.130 4.130 21 C -0.182 4.182 22 C 0.048 3.952 23 H 0.075 0.925 24 H 0.001 0.999 25 H 0.031 0.969 26 H 0.072 0.928 27 H 0.098 0.902 28 H 0.144 0.856 29 H 0.170 0.830 30 H 0.056 0.944 31 H 0.095 0.905 32 H 0.110 0.890 33 H 0.100 0.900 34 H 0.164 0.836 35 H 0.167 0.833 36 H 0.156 0.844 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 16.195 -6.087 2.986 17.557 hybrid contribution 0.379 1.838 0.140 1.881 sum 16.573 -4.250 3.126 17.393 Atomic orbital electron populations 1.70019 1.07765 1.27756 1.51999 1.25545 0.95271 1.01879 0.94597 0.86049 0.79447 0.80314 0.79127 1.19554 1.20589 1.18005 1.21081 0.90034 0.93358 1.49430 0.93708 1.18621 0.93862 0.81869 0.94096 1.49324 1.13373 1.15829 1.52477 1.21664 0.98957 0.92892 0.86583 1.22210 0.88732 0.95600 0.97979 0.90045 1.59052 1.49862 1.22628 1.07362 1.22175 0.96239 0.98536 1.01275 1.20417 0.99822 0.99376 0.90591 1.20154 0.93166 1.04988 0.95748 1.21390 0.95039 0.99154 0.96630 1.21278 1.00065 1.01841 0.93138 1.21173 0.92096 0.98918 1.00768 1.21593 0.97828 1.04036 0.94711 1.18255 0.85754 0.98315 0.92903 0.92514 0.99918 0.96947 0.92777 0.90162 0.85616 0.82961 0.94435 0.90531 0.88995 0.89978 0.83608 0.83325 0.84397 0.87921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.05 13.96 21.45 0.30 -56.75 16 2 C 0.03 1.47 5.44 84.65 0.46 1.93 16 3 Si 0.93 43.32 27.57 68.60 1.89 45.21 16 4 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 5 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.26 -11.36 6.40 99.48 0.64 -10.72 16 7 C -0.50 -27.81 7.20 25.60 0.18 -27.63 16 8 H 0.04 2.82 6.67 -2.91 -0.02 2.80 16 9 C 0.24 11.46 3.35 86.28 0.29 11.74 16 10 N -0.59 -24.92 2.81 -708.26 -1.99 -26.90 16 11 C 0.12 4.86 4.93 86.72 0.43 5.29 16 12 C 0.07 2.34 2.68 45.02 0.12 2.46 16 13 H 0.08 2.45 8.25 -1.69 -0.01 2.44 16 14 N -0.86 -34.02 9.24 -168.12 -1.55 -35.57 16 15 C -0.14 -4.27 5.06 30.22 0.15 -4.12 16 16 C -0.06 -1.62 5.15 29.78 0.15 -1.46 16 17 C -0.14 -4.06 5.37 -19.81 -0.11 -4.16 16 18 C -0.10 -2.46 9.51 22.38 0.21 -2.25 16 19 C -0.14 -3.30 10.05 22.20 0.22 -3.07 16 20 C -0.11 -2.99 10.03 22.14 0.22 -2.77 16 21 C -0.16 -5.60 9.22 22.60 0.21 -5.39 16 22 C 0.14 5.24 4.93 38.21 0.19 5.43 16 23 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 24 H -0.02 -0.79 4.11 -2.39 -0.01 -0.80 16 25 H 0.01 0.62 7.30 -2.38 -0.02 0.60 16 26 H 0.05 2.50 6.63 -2.27 -0.02 2.49 16 27 H 0.08 2.74 7.28 -2.30 -0.02 2.72 16 28 H 0.33 11.24 9.01 -89.70 -0.81 10.44 16 29 H 0.35 16.21 4.69 -89.70 -0.42 15.79 16 30 H 0.04 1.35 5.82 -2.60 -0.02 1.34 16 31 H 0.08 1.93 8.20 -2.01 -0.02 1.92 16 32 H 0.09 1.80 7.84 -2.34 -0.02 1.79 16 33 H 0.08 1.89 7.39 -2.42 -0.02 1.87 16 34 H 0.15 2.49 7.90 -2.90 -0.02 2.47 16 35 H 0.15 2.36 8.06 -2.91 -0.02 2.33 16 36 H 0.14 2.98 8.06 -2.89 -0.02 2.96 16 37 H 0.10 3.88 8.02 -2.90 -0.02 3.85 16 Total: -1.00 -64.29 280.65 1.18 -63.10 By element: Atomic # 1 Polarization: 35.13 SS G_CDS: -0.20 Total: 34.93 kcal Atomic # 6 Polarization: -26.74 SS G_CDS: 2.74 Total: -24.01 kcal Atomic # 7 Polarization: -115.99 SS G_CDS: -3.24 Total: -119.23 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 1.89 Total: 45.21 kcal Total: -64.29 1.18 -63.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696378420.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.671 kcal (2) G-P(sol) polarization free energy of solvation -64.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds