Wall clock time and date at job start Mon Mar 30 2020 03:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48497 * 109.46961 * 240.00175 * 3 2 1 5 5 H 1.48499 * 109.47018 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47225 * 120.00126 * 3 2 1 7 7 C 1.37877 * 120.00067 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00326 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99945 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.47241 * 179.97438 * 9 7 2 11 11 C 1.46815 * 111.00315 * 273.88404 * 10 9 7 12 12 C 1.51719 * 111.15762 * 324.43795 * 11 10 9 13 13 H 1.09004 * 108.59824 * 53.58875 * 12 11 10 14 14 N 1.46903 * 108.59587 * 171.30287 * 12 11 10 15 15 C 1.51777 * 113.89469 * 292.44790 * 12 11 10 16 16 C 1.53176 * 110.62059 * 66.79720 * 15 12 11 17 17 C 1.51459 * 108.22924 * 276.84251 * 16 15 12 18 18 C 1.38166 * 119.73000 * 249.47773 * 17 16 15 19 19 C 1.38376 * 119.66319 * 180.20069 * 18 17 16 20 20 C 1.38302 * 120.15092 * 359.97438 * 19 18 17 21 21 C 1.38141 * 120.19123 * 359.95614 * 20 19 18 22 22 C 1.37782 * 119.86271 * 69.56992 * 17 16 15 23 23 H 0.96995 * 120.00267 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47215 * 59.99425 * 9 7 2 25 25 H 1.09001 * 109.47389 * 299.99608 * 9 7 2 26 26 H 1.08998 * 109.13715 * 84.86805 * 11 10 9 27 27 H 1.08992 * 109.14380 * 204.00670 * 11 10 9 28 28 H 1.00897 * 110.99919 * 180.02562 * 14 12 11 29 29 H 1.00895 * 111.00155 * 303.95228 * 14 12 11 30 30 H 1.09002 * 109.24929 * 306.50357 * 15 12 11 31 31 H 1.09004 * 109.21379 * 187.06792 * 15 12 11 32 32 H 1.09002 * 109.71266 * 157.15520 * 16 15 12 33 33 H 1.08994 * 109.70786 * 36.52450 * 16 15 12 34 34 H 1.07997 * 120.17005 * 0.17080 * 18 17 16 35 35 H 1.07999 * 119.91906 * 180.02562 * 19 18 17 36 36 H 1.08000 * 119.90315 * 179.97438 * 20 19 18 37 37 H 1.07999 * 120.20633 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 2.6181 -3.9553 -1.3669 12 6 1.4709 -3.7806 -2.3443 13 1 1.0723 -2.7719 -2.2358 14 7 1.9920 -3.9296 -3.7097 15 6 0.3389 -4.7722 -2.1472 16 6 -0.3680 -4.5253 -0.8109 17 6 0.4219 -5.2204 0.2785 18 6 -0.1082 -6.3308 0.9069 19 6 0.6129 -6.9624 1.9049 20 6 1.8581 -6.4844 2.2708 21 6 2.3888 -5.3750 1.6416 22 6 1.6627 -4.7414 0.6382 23 1 -0.4850 0.8400 -0.0004 24 1 0.6246 -2.5570 -0.8896 25 1 0.6241 -2.5568 0.8903 26 1 3.4421 -3.3063 -1.6632 27 1 2.9541 -4.9919 -1.3919 28 1 1.2564 -3.8192 -4.3915 29 1 2.7448 -3.2804 -3.8823 30 1 0.7421 -5.7848 -2.1586 31 1 -0.3797 -4.6624 -2.9595 32 1 -1.3786 -4.9320 -0.8489 33 1 -0.4093 -3.4550 -0.6092 34 1 -1.0805 -6.7038 0.6210 35 1 0.2027 -7.8309 2.3986 36 1 2.4173 -6.9801 3.0506 37 1 3.3613 -5.0019 1.9269 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000696378440.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:16 Heat of formation + Delta-G solvation = 54.270849 kcal Electronic energy + Delta-G solvation = -18530.436022 eV Core-core repulsion = 15887.109514 eV Total energy + Delta-G solvation = -2643.326508 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.35656 -37.15248 -34.27585 -32.69681 -32.58720 -29.59480 -28.98125 -27.64525 -25.02433 -23.87013 -22.61240 -21.75779 -20.07024 -18.89938 -16.61275 -16.36114 -15.57707 -15.32442 -14.90537 -14.67833 -14.45903 -13.98541 -13.33776 -13.13237 -12.64140 -12.42191 -12.30204 -12.09835 -11.82952 -11.31032 -11.10643 -11.01831 -10.98618 -10.64981 -10.53208 -10.20143 -10.03350 -9.86758 -9.25093 -8.49472 -8.35375 -8.28775 -7.96538 -7.29702 -6.06710 -4.07698 1.82150 1.85021 3.30074 3.34587 3.37812 4.20662 4.37481 4.69687 5.04176 5.13847 5.22833 5.28155 5.39976 5.43409 5.49662 5.74188 5.81059 5.97888 6.01241 6.09846 6.13233 6.25106 6.36882 6.45259 6.59422 6.61205 6.68153 6.85989 6.90729 7.09499 7.12733 7.31450 7.41226 7.47778 7.76488 7.82185 8.05945 8.17741 8.55528 8.98799 9.55732 11.02767 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.021829 B = 0.008295 C = 0.007157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.376096 B = 3374.551028 C = 3911.401135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.503 4.503 8 H 0.063 0.937 9 C 0.169 3.831 10 N -0.495 5.495 11 C 0.083 3.917 12 C 0.046 3.954 13 H 0.069 0.931 14 N -0.849 5.849 15 C -0.098 4.098 16 C -0.116 4.116 17 C -0.105 4.105 18 C -0.116 4.116 19 C -0.137 4.137 20 C -0.127 4.127 21 C -0.102 4.102 22 C 0.110 3.890 23 H 0.262 0.738 24 H 0.038 0.962 25 H 0.026 0.974 26 H 0.073 0.927 27 H 0.058 0.942 28 H 0.334 0.666 29 H 0.340 0.660 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.473 -10.466 -1.927 10.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.542 4.542 8 H 0.081 0.919 9 C 0.046 3.954 10 N -0.215 5.215 11 C -0.045 4.045 12 C -0.066 4.066 13 H 0.086 0.914 14 N -0.378 5.378 15 C -0.136 4.136 16 C -0.153 4.153 17 C -0.107 4.107 18 C -0.135 4.135 19 C -0.155 4.155 20 C -0.146 4.146 21 C -0.121 4.121 22 C 0.016 3.984 23 H 0.072 0.928 24 H 0.055 0.945 25 H 0.044 0.956 26 H 0.091 0.909 27 H 0.076 0.924 28 H 0.145 0.855 29 H 0.152 0.848 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.135 0.865 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.134 0.866 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.956 -10.897 -1.446 11.034 hybrid contribution -0.674 1.672 -0.453 1.859 sum 0.281 -9.225 -1.899 9.423 Atomic orbital electron populations 1.69925 1.05961 1.26950 1.51137 1.24969 0.94885 0.99206 0.95566 0.86560 0.79436 0.82752 0.78676 1.20338 1.21391 1.20177 1.21148 0.93650 0.89658 1.49769 0.91925 1.20452 0.90462 0.86838 0.97644 1.60656 1.42360 1.03844 1.14674 1.21598 0.96334 1.00155 0.86370 1.21732 0.95915 0.99776 0.89152 0.91362 1.58837 1.14742 1.60569 1.03693 1.21238 0.96589 0.99528 0.96255 1.21512 0.97157 1.04283 0.92375 1.20502 0.96164 0.96128 0.97886 1.20938 0.99486 0.95974 0.97096 1.20995 0.95474 1.00391 0.98641 1.20979 0.96079 0.97175 1.00319 1.21144 1.00231 0.95200 0.95545 1.19001 0.91832 0.92204 0.95410 0.92845 0.94475 0.95590 0.90873 0.92373 0.85483 0.84827 0.92061 0.92320 0.91680 0.86542 0.86772 0.86877 0.86615 0.85692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.84 13.29 55.43 0.74 -25.11 16 2 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 3 Si 0.90 21.37 29.54 -169.99 -5.02 16.34 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.50 -13.82 9.28 -34.44 -0.32 -14.14 16 8 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 9 C 0.17 4.23 2.67 -4.98 -0.01 4.21 16 10 N -0.49 -10.75 4.62 -173.40 -0.80 -11.56 16 11 C 0.08 1.61 5.29 -4.52 -0.02 1.58 16 12 C 0.05 0.83 2.64 -68.98 -0.18 0.65 16 13 H 0.07 1.46 5.61 -51.93 -0.29 1.17 16 14 N -0.85 -12.83 9.20 -5.75 -0.05 -12.88 16 15 C -0.10 -1.65 5.17 -27.26 -0.14 -1.79 16 16 C -0.12 -2.10 5.44 -27.42 -0.15 -2.25 16 17 C -0.10 -1.93 4.81 -104.44 -0.50 -2.43 16 18 C -0.12 -1.86 9.69 -39.56 -0.38 -2.24 16 19 C -0.14 -2.00 10.05 -39.51 -0.40 -2.40 16 20 C -0.13 -1.92 10.03 -39.59 -0.40 -2.32 16 21 C -0.10 -1.82 9.98 -39.29 -0.39 -2.21 16 22 C 0.11 2.19 4.27 -83.81 -0.36 1.83 16 23 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 24 H 0.04 0.94 2.62 -51.93 -0.14 0.81 16 25 H 0.03 0.73 7.57 -51.93 -0.39 0.33 16 26 H 0.07 1.44 8.05 -51.93 -0.42 1.02 16 27 H 0.06 1.09 7.76 -51.93 -0.40 0.69 16 28 H 0.33 4.47 8.90 -39.29 -0.35 4.12 16 29 H 0.34 4.87 8.90 -39.29 -0.35 4.52 16 30 H 0.06 1.03 7.89 -51.93 -0.41 0.62 16 31 H 0.06 0.89 8.06 -51.93 -0.42 0.47 16 32 H 0.06 1.03 7.92 -51.93 -0.41 0.62 16 33 H 0.12 2.50 4.21 -51.93 -0.22 2.28 16 34 H 0.11 1.56 7.97 -52.49 -0.42 1.15 16 35 H 0.11 1.33 8.06 -52.49 -0.42 0.90 16 36 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 37 H 0.13 2.12 8.06 -52.49 -0.42 1.70 16 LS Contribution 288.49 15.07 4.35 4.35 Total: -1.00 -28.84 288.49 -9.18 -38.02 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -5.03 Total: 10.93 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: -3.36 Total: -20.09 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: -0.12 Total: -49.55 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.84 -9.18 -38.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696378440.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.290 kcal (2) G-P(sol) polarization free energy of solvation -28.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds