Wall clock time and date at job start Mon Mar 30 2020 03:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 119.99748 * 2 1 4 4 H 1.48499 * 109.47139 * 240.00176 * 3 2 1 5 5 H 1.48511 * 109.46985 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47046 * 120.00099 * 3 2 1 7 7 C 1.37875 * 120.00029 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99822 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99918 * 359.97438 * 7 2 1 10 10 N 1.46907 * 109.46960 * 180.85872 * 9 7 2 11 11 C 1.46426 * 111.00144 * 69.90648 * 10 9 7 12 12 C 1.53375 * 108.66596 * 181.16582 * 11 10 9 13 13 C 1.53052 * 107.91727 * 68.27309 * 12 11 10 14 14 C 1.50805 * 109.64342 * 312.68031 * 13 12 11 15 15 C 1.38622 * 118.11955 * 195.49583 * 14 13 12 16 16 C 1.38050 * 120.48788 * 180.29025 * 15 14 13 17 17 C 1.50693 * 120.05824 * 180.02562 * 16 15 14 18 18 N 1.46901 * 109.47389 * 89.99607 * 17 16 15 19 19 C 1.38315 * 119.88971 * 0.02562 * 16 15 14 20 20 C 1.37816 * 119.95164 * 359.85943 * 19 16 15 21 21 C 1.38374 * 122.01566 * 15.54058 * 14 13 12 22 22 H 0.96994 * 120.00546 * 0.02562 * 1 2 3 23 23 H 1.08994 * 109.47701 * 60.86121 * 9 7 2 24 24 H 1.09000 * 109.47376 * 300.85535 * 9 7 2 25 25 H 1.08997 * 109.60515 * 300.92437 * 11 10 9 26 26 H 1.09006 * 109.60396 * 61.24719 * 11 10 9 27 27 H 1.09002 * 109.77218 * 187.87517 * 12 11 10 28 28 H 1.08995 * 109.77255 * 308.61303 * 12 11 10 29 29 H 1.08997 * 109.44304 * 72.73076 * 13 12 11 30 30 H 1.09002 * 109.44031 * 192.62891 * 13 12 11 31 31 H 1.08001 * 119.75421 * 0.26744 * 15 14 13 32 32 H 1.08993 * 109.47558 * 209.99893 * 17 16 15 33 33 H 1.09004 * 109.46880 * 329.99740 * 17 16 15 34 34 H 1.00904 * 111.00159 * 56.04648 * 18 17 16 35 35 H 1.00905 * 110.99855 * 180.02562 * 18 17 16 36 36 H 1.07992 * 120.02543 * 179.87575 * 19 16 15 37 37 H 1.07998 * 119.79124 * 180.02562 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2056 -3.6156 0.0196 11 6 2.8874 -3.6999 1.3127 12 6 3.8886 -4.8608 1.2650 13 6 5.0070 -4.4784 0.2926 14 6 4.4081 -3.9382 -0.9816 15 6 5.2240 -3.8438 -2.0983 16 6 4.7281 -3.3507 -3.2885 17 6 5.6235 -3.2529 -4.4966 18 7 5.5458 -4.5019 -5.2661 19 6 3.4078 -2.9465 -3.3703 20 6 2.5900 -3.0395 -2.2650 21 6 3.0850 -3.5405 -1.0594 22 1 -0.4851 0.8399 -0.0004 23 1 0.6357 -2.5634 -0.8978 24 1 0.6133 -2.5504 0.8819 25 1 3.4172 -2.7677 1.5083 26 1 2.1557 -3.8769 2.1011 27 1 4.3052 -5.0295 2.2581 28 1 3.3889 -5.7646 0.9165 29 1 5.6389 -3.7160 0.7482 30 1 5.6078 -5.3592 0.0662 31 1 6.2555 -4.1581 -2.0366 32 1 5.3008 -2.4204 -5.1217 33 1 6.6517 -3.0881 -4.1744 34 1 4.5922 -4.7106 -5.5215 35 1 6.1384 -4.4614 -6.0819 36 1 3.0181 -2.5585 -4.2998 37 1 1.5594 -2.7235 -2.3319 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700946639.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:58 Heat of formation + Delta-G solvation = 19.721994 kcal Electronic energy + Delta-G solvation = -18103.375822 eV Core-core repulsion = 15458.551163 eV Total energy + Delta-G solvation = -2644.824659 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.84923 -36.85948 -34.15625 -33.77204 -32.26158 -29.60841 -29.13097 -27.01565 -24.94245 -23.91968 -22.69670 -21.54802 -20.50834 -18.53355 -16.71411 -16.20038 -15.63682 -15.56625 -14.65880 -14.51560 -14.25575 -13.80920 -13.40899 -13.09679 -12.74772 -12.61398 -12.52987 -11.96957 -11.86670 -11.55966 -11.20369 -11.03656 -10.73481 -10.69323 -10.54891 -10.30365 -10.05963 -9.88063 -9.57428 -8.78597 -8.59393 -8.49045 -7.99258 -6.72160 -6.09553 -4.18947 2.11129 2.18519 3.26321 3.30592 3.34660 4.31032 4.38225 4.86427 4.97842 5.13457 5.21000 5.30717 5.42177 5.48530 5.56118 5.64908 5.81483 5.88584 5.97922 6.05581 6.22221 6.30461 6.38338 6.46875 6.60933 6.65930 6.74303 6.98991 7.08113 7.15295 7.24089 7.29609 7.40995 7.52225 7.61764 7.80851 7.94061 8.15091 8.36654 8.87921 9.47260 10.94598 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.018566 B = 0.008631 C = 0.006854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.743569 B = 3243.225955 C = 4084.498613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.068 3.932 3 Si 0.890 3.110 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.542 4.542 8 H 0.057 0.943 9 C 0.188 3.812 10 N -0.502 5.502 11 C 0.064 3.936 12 C -0.123 4.123 13 C -0.069 4.069 14 C -0.149 4.149 15 C -0.076 4.076 16 C -0.141 4.141 17 C 0.113 3.887 18 N -0.847 5.847 19 C -0.097 4.097 20 C -0.131 4.131 21 C 0.175 3.825 22 H 0.264 0.736 23 H 0.041 0.959 24 H 0.038 0.962 25 H 0.053 0.947 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.109 0.891 32 H 0.028 0.972 33 H 0.071 0.929 34 H 0.341 0.659 35 H 0.334 0.666 36 H 0.107 0.893 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.710 -7.057 -4.277 11.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.135 4.135 3 Si 0.718 3.282 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.580 4.580 8 H 0.076 0.924 9 C 0.066 3.934 10 N -0.213 5.213 11 C -0.062 4.062 12 C -0.161 4.161 13 C -0.106 4.106 14 C -0.153 4.153 15 C -0.096 4.096 16 C -0.142 4.142 17 C -0.017 4.017 18 N -0.376 5.376 19 C -0.117 4.117 20 C -0.151 4.151 21 C 0.074 3.926 22 H 0.074 0.926 23 H 0.058 0.942 24 H 0.056 0.944 25 H 0.071 0.929 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.127 0.873 32 H 0.046 0.954 33 H 0.089 0.911 34 H 0.154 0.846 35 H 0.146 0.854 36 H 0.125 0.875 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 8.502 -7.686 -3.564 12.003 hybrid contribution 0.360 2.339 -0.719 2.473 sum 8.863 -5.347 -4.283 11.202 Atomic orbital electron populations 1.69921 1.05963 1.27155 1.49883 1.24905 0.94756 0.99116 0.94734 0.86673 0.79700 0.83051 0.78822 1.20078 1.21143 1.20222 1.21610 0.93197 0.91330 1.51911 0.92436 1.19985 0.90344 0.84404 0.98708 1.58520 1.17218 1.44061 1.01542 1.21956 0.96007 0.97617 0.90656 1.21737 0.96489 0.99055 0.98802 1.20391 0.97348 0.99740 0.93149 1.19397 0.92688 1.07203 0.95987 1.20515 0.98396 0.98836 0.91826 1.19276 0.94613 1.05528 0.94817 1.20530 0.98727 0.89824 0.92651 1.58767 1.14697 1.36361 1.27802 1.20660 0.93243 0.99907 0.97863 1.21139 1.01020 1.01043 0.91894 1.18552 0.89442 0.92518 0.92078 0.92620 0.94158 0.94439 0.92863 0.90927 0.91566 0.91349 0.91665 0.91638 0.87322 0.95411 0.91088 0.84647 0.85393 0.87467 0.85311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.52 13.29 55.43 0.74 -24.78 16 2 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 3 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.54 -14.60 7.11 -34.44 -0.24 -14.85 16 8 H 0.06 1.60 6.85 -52.49 -0.36 1.24 16 9 C 0.19 4.73 4.60 -4.97 -0.02 4.71 16 10 N -0.50 -10.97 4.72 -172.65 -0.82 -11.79 16 11 C 0.06 1.24 5.29 -3.89 -0.02 1.22 16 12 C -0.12 -1.93 6.19 -26.51 -0.16 -2.09 16 13 C -0.07 -1.10 5.81 -27.80 -0.16 -1.26 16 14 C -0.15 -2.83 5.74 -104.38 -0.60 -3.43 16 15 C -0.08 -1.34 9.29 -39.51 -0.37 -1.70 16 16 C -0.14 -2.39 5.39 -104.67 -0.56 -2.96 16 17 C 0.11 1.53 6.91 -4.98 -0.03 1.50 16 18 N -0.85 -10.16 9.61 -11.41 -0.11 -10.27 16 19 C -0.10 -1.80 9.70 -39.71 -0.38 -2.18 16 20 C -0.13 -2.77 8.37 -39.22 -0.33 -3.10 16 21 C 0.18 3.74 4.72 -83.85 -0.40 3.34 16 22 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 23 H 0.04 1.07 6.26 -51.93 -0.33 0.74 16 24 H 0.04 0.99 8.07 -51.93 -0.42 0.57 16 25 H 0.05 1.12 7.09 -51.93 -0.37 0.75 16 26 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 32 H 0.03 0.36 8.09 -51.93 -0.42 -0.06 16 33 H 0.07 0.92 8.09 -51.93 -0.42 0.50 16 34 H 0.34 3.97 8.99 -39.29 -0.35 3.62 16 35 H 0.33 3.12 9.08 -39.29 -0.36 2.77 16 36 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 37 H 0.13 2.91 5.96 -52.49 -0.31 2.60 16 LS Contribution 296.65 15.07 4.47 4.47 Total: -1.00 -29.02 296.65 -9.55 -38.57 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -5.43 Total: 6.44 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: -3.38 Total: -19.04 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: -0.19 Total: -46.84 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.02 -9.55 -38.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700946639.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.291 kcal (2) G-P(sol) polarization free energy of solvation -29.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds