Wall clock time and date at job start Mon Mar 30 2020 03:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 119.99748 * 2 1 4 4 H 1.48499 * 109.47139 * 240.00176 * 3 2 1 5 5 H 1.48511 * 109.46985 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47046 * 120.00099 * 3 2 1 7 7 C 1.37875 * 120.00029 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99822 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99918 * 359.97438 * 7 2 1 10 10 N 1.46907 * 109.46960 * 180.85872 * 9 7 2 11 11 C 1.46426 * 111.00144 * 69.90648 * 10 9 7 12 12 C 1.53375 * 108.66596 * 181.16582 * 11 10 9 13 13 C 1.53052 * 107.91727 * 68.27309 * 12 11 10 14 14 C 1.50805 * 109.64342 * 312.68031 * 13 12 11 15 15 C 1.38622 * 118.11955 * 195.49583 * 14 13 12 16 16 C 1.38050 * 120.48788 * 180.29025 * 15 14 13 17 17 C 1.50693 * 120.05824 * 180.02562 * 16 15 14 18 18 N 1.46901 * 109.47389 * 89.99607 * 17 16 15 19 19 C 1.38315 * 119.88971 * 0.02562 * 16 15 14 20 20 C 1.37816 * 119.95164 * 359.85943 * 19 16 15 21 21 C 1.38374 * 122.01566 * 15.54058 * 14 13 12 22 22 H 0.96994 * 120.00546 * 0.02562 * 1 2 3 23 23 H 1.08994 * 109.47701 * 60.86121 * 9 7 2 24 24 H 1.09000 * 109.47376 * 300.85535 * 9 7 2 25 25 H 1.08997 * 109.60515 * 300.92437 * 11 10 9 26 26 H 1.09006 * 109.60396 * 61.24719 * 11 10 9 27 27 H 1.09002 * 109.77218 * 187.87517 * 12 11 10 28 28 H 1.08995 * 109.77255 * 308.61303 * 12 11 10 29 29 H 1.08997 * 109.44304 * 72.73076 * 13 12 11 30 30 H 1.09002 * 109.44031 * 192.62891 * 13 12 11 31 31 H 1.08001 * 119.75421 * 0.26744 * 15 14 13 32 32 H 1.08993 * 109.47558 * 209.99893 * 17 16 15 33 33 H 1.09004 * 109.46880 * 329.99740 * 17 16 15 34 34 H 1.00904 * 111.00159 * 56.04648 * 18 17 16 35 35 H 1.00905 * 110.99855 * 180.02562 * 18 17 16 36 36 H 1.07992 * 120.02543 * 179.87575 * 19 16 15 37 37 H 1.07998 * 119.79124 * 180.02562 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2056 -3.6156 0.0196 11 6 2.8874 -3.6999 1.3127 12 6 3.8886 -4.8608 1.2650 13 6 5.0070 -4.4784 0.2926 14 6 4.4081 -3.9382 -0.9816 15 6 5.2240 -3.8438 -2.0983 16 6 4.7281 -3.3507 -3.2885 17 6 5.6235 -3.2529 -4.4966 18 7 5.5458 -4.5019 -5.2661 19 6 3.4078 -2.9465 -3.3703 20 6 2.5900 -3.0395 -2.2650 21 6 3.0850 -3.5405 -1.0594 22 1 -0.4851 0.8399 -0.0004 23 1 0.6357 -2.5634 -0.8978 24 1 0.6133 -2.5504 0.8819 25 1 3.4172 -2.7677 1.5083 26 1 2.1557 -3.8769 2.1011 27 1 4.3052 -5.0295 2.2581 28 1 3.3889 -5.7646 0.9165 29 1 5.6389 -3.7160 0.7482 30 1 5.6078 -5.3592 0.0662 31 1 6.2555 -4.1581 -2.0366 32 1 5.3008 -2.4204 -5.1217 33 1 6.6517 -3.0881 -4.1744 34 1 4.5922 -4.7106 -5.5215 35 1 6.1384 -4.4614 -6.0819 36 1 3.0181 -2.5585 -4.2998 37 1 1.5594 -2.7235 -2.3319 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700946639.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:57 Heat of formation + Delta-G solvation = 0.562010 kcal Electronic energy + Delta-G solvation = -18104.206661 eV Core-core repulsion = 15458.551163 eV Total energy + Delta-G solvation = -2645.655498 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.36430 -38.29574 -35.77079 -34.96057 -34.19759 -31.01173 -30.57097 -28.92209 -26.29588 -25.58099 -24.25020 -22.96192 -22.11702 -19.94963 -18.70977 -17.63744 -17.19429 -16.89566 -16.45266 -15.86259 -15.46550 -15.26548 -14.89072 -14.75672 -14.21269 -14.15058 -13.93561 -13.49779 -13.23550 -13.20429 -12.92691 -12.84951 -12.51135 -12.25765 -12.06526 -11.92354 -11.81656 -11.47098 -11.18020 -10.64413 -10.41461 -9.57060 -9.44622 -8.45573 -8.09652 -6.37855 0.63928 0.69809 1.33243 1.34644 1.42748 2.33598 2.85570 3.05858 3.36102 3.83626 3.91380 4.00747 4.13313 4.16778 4.26435 4.37711 4.48025 4.58791 4.75124 4.77841 4.85531 4.88632 5.00022 5.03520 5.09662 5.18547 5.22618 5.34572 5.40954 5.57142 5.61953 5.68588 5.84378 5.95377 6.11598 6.24821 6.32190 6.67409 6.73023 6.78928 7.31480 8.82346 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.018566 B = 0.008631 C = 0.006854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.743569 B = 3243.225955 C = 4084.498613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.018 3.982 3 Si 0.952 3.048 4 H -0.274 1.274 5 H -0.279 1.279 6 H -0.269 1.269 7 C -0.540 4.540 8 H 0.048 0.952 9 C 0.204 3.796 10 N -0.507 5.507 11 C 0.060 3.940 12 C -0.112 4.112 13 C -0.069 4.069 14 C -0.154 4.154 15 C -0.080 4.080 16 C -0.132 4.132 17 C 0.116 3.884 18 N -0.850 5.850 19 C -0.104 4.104 20 C -0.158 4.158 21 C 0.142 3.858 22 H 0.266 0.734 23 H 0.015 0.985 24 H 0.014 0.986 25 H 0.031 0.969 26 H 0.073 0.927 27 H 0.100 0.900 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.095 0.905 31 H 0.138 0.862 32 H 0.036 0.964 33 H 0.085 0.915 34 H 0.343 0.657 35 H 0.352 0.648 36 H 0.123 0.877 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.728 -7.531 -4.766 14.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.182 4.182 3 Si 0.777 3.223 4 H -0.199 1.199 5 H -0.204 1.204 6 H -0.195 1.195 7 C -0.579 4.579 8 H 0.066 0.934 9 C 0.080 3.920 10 N -0.219 5.219 11 C -0.066 4.066 12 C -0.149 4.149 13 C -0.106 4.106 14 C -0.157 4.157 15 C -0.099 4.099 16 C -0.134 4.134 17 C -0.014 4.014 18 N -0.381 5.381 19 C -0.123 4.123 20 C -0.179 4.179 21 C 0.042 3.958 22 H 0.075 0.925 23 H 0.033 0.967 24 H 0.032 0.968 25 H 0.049 0.951 26 H 0.092 0.908 27 H 0.118 0.882 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.113 0.887 31 H 0.156 0.844 32 H 0.054 0.946 33 H 0.103 0.897 34 H 0.155 0.845 35 H 0.166 0.834 36 H 0.141 0.859 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 11.547 -8.178 -4.070 14.724 hybrid contribution -0.540 2.431 -0.648 2.573 sum 11.007 -5.747 -4.718 13.284 Atomic orbital electron populations 1.70030 1.07325 1.28025 1.50909 1.25685 0.95553 1.02432 0.94505 0.85700 0.78560 0.79175 0.78890 1.19900 1.20360 1.19451 1.21690 0.92665 0.92253 1.51270 0.93408 1.19581 0.90673 0.85522 0.96205 1.58507 1.17769 1.42612 1.03057 1.22063 0.96698 0.98386 0.89501 1.21707 0.95403 0.97003 1.00826 1.20501 0.97461 1.01040 0.91613 1.19837 0.91681 1.06131 0.98029 1.20907 0.99524 0.98152 0.91330 1.19709 0.94190 1.03225 0.96259 1.20503 0.98499 0.90848 0.91511 1.58698 1.15275 1.35298 1.28820 1.20867 0.93914 0.99887 0.97595 1.21087 1.00241 1.02979 0.93552 1.18748 0.90768 0.94726 0.91589 0.92462 0.96655 0.96790 0.95090 0.90841 0.88165 0.91345 0.90799 0.88662 0.84423 0.94586 0.89712 0.84474 0.83403 0.85902 0.88399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.61 13.29 21.45 0.28 -54.32 16 2 C 0.02 1.02 5.46 84.65 0.46 1.48 16 3 Si 0.95 44.41 29.54 68.60 2.03 46.44 16 4 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 6 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.54 -30.18 7.11 25.60 0.18 -30.00 16 8 H 0.05 2.72 6.85 -2.91 -0.02 2.70 16 9 C 0.20 10.90 4.60 85.55 0.39 11.29 16 10 N -0.51 -23.02 4.72 -700.15 -3.31 -26.33 16 11 C 0.06 2.33 5.29 86.52 0.46 2.79 16 12 C -0.11 -3.27 6.19 30.74 0.19 -3.08 16 13 C -0.07 -1.99 5.81 29.90 0.17 -1.82 16 14 C -0.15 -5.58 5.74 -19.71 -0.11 -5.70 16 15 C -0.08 -2.58 9.29 22.32 0.21 -2.37 16 16 C -0.13 -4.21 5.39 -19.89 -0.11 -4.32 16 17 C 0.12 2.78 6.91 85.55 0.59 3.37 16 18 N -0.85 -17.60 9.61 -190.02 -1.83 -19.43 16 19 C -0.10 -3.79 9.70 22.19 0.22 -3.58 16 20 C -0.16 -6.97 8.37 22.50 0.19 -6.78 16 21 C 0.14 6.14 4.72 38.30 0.18 6.32 16 22 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 23 H 0.02 0.89 6.26 -2.39 -0.01 0.87 16 24 H 0.01 0.79 8.07 -2.39 -0.02 0.77 16 25 H 0.03 1.32 7.09 -2.39 -0.02 1.30 16 26 H 0.07 2.75 8.14 -2.38 -0.02 2.73 16 27 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 32 H 0.04 0.81 8.09 -2.39 -0.02 0.79 16 33 H 0.08 1.83 8.09 -2.38 -0.02 1.81 16 34 H 0.34 7.09 8.99 -89.69 -0.81 6.28 16 35 H 0.35 5.34 9.08 -89.69 -0.81 4.53 16 36 H 0.12 3.96 8.06 -2.91 -0.02 3.94 16 37 H 0.10 4.81 5.96 -2.91 -0.02 4.80 16 Total: -1.00 -64.24 296.65 -0.34 -64.58 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: -0.54 Total: 21.45 kcal Atomic # 6 Polarization: -35.41 SS G_CDS: 3.02 Total: -32.39 kcal Atomic # 7 Polarization: -95.23 SS G_CDS: -4.85 Total: -100.08 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -64.24 -0.34 -64.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700946639.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.141 kcal (2) G-P(sol) polarization free energy of solvation -64.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds