Wall clock time and date at job start Mon Mar 30 2020 03:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99920 * 2 1 4 4 H 1.48500 * 109.47113 * 240.00125 * 3 2 1 5 5 H 1.48503 * 109.47198 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47250 * 119.99858 * 3 2 1 7 7 C 1.37873 * 120.00234 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00309 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99784 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.47065 * 179.97438 * 9 7 2 11 11 C 1.46421 * 110.99885 * 283.75156 * 10 9 7 12 12 C 1.53392 * 108.66799 * 287.78315 * 11 10 9 13 13 C 1.53048 * 107.97020 * 291.75721 * 12 11 10 14 14 C 1.50921 * 109.58449 * 47.34516 * 13 12 11 15 15 C 1.38610 * 118.10297 * 164.60103 * 14 13 12 16 16 C 1.38054 * 120.48998 * 179.37485 * 15 14 13 17 17 C 1.38315 * 119.88346 * 0.02562 * 16 15 14 18 18 C 1.37800 * 119.95501 * 0.14495 * 17 16 15 19 19 C 1.50704 * 119.79095 * 179.97438 * 18 17 16 20 20 N 1.46900 * 109.46915 * 101.24849 * 19 18 17 21 21 C 1.38377 * 122.03383 * 344.24612 * 14 13 12 22 22 H 0.97003 * 119.99846 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47330 * 59.99952 * 9 7 2 24 24 H 1.09002 * 109.46824 * 299.99591 * 9 7 2 25 25 H 1.08998 * 109.60310 * 168.03609 * 11 10 9 26 26 H 1.08999 * 109.74157 * 47.61827 * 11 10 9 27 27 H 1.09001 * 109.76712 * 51.38780 * 12 11 10 28 28 H 1.08998 * 109.76729 * 172.12086 * 12 11 10 29 29 H 1.08998 * 109.43817 * 167.43903 * 13 12 11 30 30 H 1.09000 * 109.43693 * 287.32749 * 13 12 11 31 31 H 1.08007 * 119.75472 * 359.35766 * 15 14 13 32 32 H 1.07998 * 120.05667 * 179.97438 * 16 15 14 33 33 H 1.08005 * 120.01714 * 180.17013 * 17 16 15 34 34 H 1.09001 * 109.47456 * 221.25094 * 19 18 17 35 35 H 1.09006 * 109.46844 * 341.25501 * 19 18 17 36 36 H 1.00896 * 111.00247 * 184.75027 * 20 19 18 37 37 H 1.00901 * 111.00462 * 308.70056 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 2.7937 -3.8033 -1.3273 12 6 1.7287 -4.4002 -2.2559 13 6 1.4384 -5.8274 -1.7857 14 6 1.2343 -5.8357 -0.2903 15 6 0.6476 -6.9533 0.2824 16 6 0.4493 -7.0186 1.6471 17 6 0.8375 -5.9623 2.4512 18 6 1.4182 -4.8465 1.8886 19 6 1.8393 -3.6975 2.7681 20 7 3.2911 -3.7535 2.9853 21 6 1.6198 -4.7739 0.5090 22 1 -0.4850 0.8401 0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6241 -2.5566 0.8904 25 1 3.6420 -4.4842 -1.2586 26 1 3.1262 -2.8432 -1.7217 27 1 0.8183 -3.8029 -2.2048 28 1 2.1009 -4.4180 -3.2802 29 1 0.5383 -6.1955 -2.2779 30 1 2.2799 -6.4716 -2.0406 31 1 0.3430 -7.7790 -0.3436 32 1 -0.0089 -7.8926 2.0859 33 1 0.6860 -6.0123 3.5194 34 1 1.5804 -2.7556 2.2843 35 1 1.3256 -3.7667 3.7270 36 1 3.5875 -3.0399 3.6340 37 1 3.5745 -4.6691 3.3008 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702868375.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:00 Heat of formation + Delta-G solvation = 28.602694 kcal Electronic energy + Delta-G solvation = -18412.591704 eV Core-core repulsion = 15768.152141 eV Total energy + Delta-G solvation = -2644.439563 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.05390 -36.48578 -34.81087 -32.89726 -31.98677 -29.79061 -29.18950 -27.15073 -24.36822 -24.17711 -22.64511 -21.92319 -20.07261 -18.80638 -16.31806 -15.96195 -15.84177 -15.24344 -14.79285 -14.49340 -13.87780 -13.66837 -13.58421 -13.11850 -12.86813 -12.45290 -12.30789 -12.01314 -11.88090 -11.66624 -11.18570 -10.83612 -10.78565 -10.74858 -10.34465 -10.17516 -10.07299 -9.84924 -9.37072 -8.47785 -8.35542 -8.18759 -7.93338 -6.85700 -6.02628 -4.03910 1.82730 1.96299 3.34073 3.38086 3.41598 4.18891 4.42958 4.86649 5.17861 5.22668 5.29353 5.32246 5.43930 5.47355 5.54124 5.73784 5.77526 5.92623 6.01977 6.06081 6.16014 6.28267 6.40562 6.46202 6.57635 6.70676 6.80499 6.91479 6.95879 7.05524 7.27946 7.33063 7.47973 7.77646 7.86688 8.03653 8.14135 8.22307 8.62202 9.04282 9.59818 11.07283 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.023837 B = 0.008232 C = 0.006997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.359211 B = 3400.594600 C = 4000.525356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.502 4.502 8 H 0.066 0.934 9 C 0.198 3.802 10 N -0.481 5.481 11 C 0.066 3.934 12 C -0.161 4.161 13 C -0.071 4.071 14 C -0.142 4.142 15 C -0.104 4.104 16 C -0.158 4.158 17 C -0.108 4.108 18 C -0.096 4.096 19 C 0.104 3.896 20 N -0.824 5.824 21 C 0.163 3.837 22 H 0.262 0.738 23 H 0.005 0.995 24 H 0.034 0.966 25 H 0.060 0.940 26 H 0.088 0.912 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.013 0.987 36 H 0.335 0.665 37 H 0.325 0.675 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.199 -11.194 1.521 11.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.541 4.541 8 H 0.084 0.916 9 C 0.077 3.923 10 N -0.194 5.194 11 C -0.062 4.062 12 C -0.199 4.199 13 C -0.108 4.108 14 C -0.146 4.146 15 C -0.123 4.123 16 C -0.177 4.177 17 C -0.127 4.127 18 C -0.099 4.099 19 C -0.026 4.026 20 N -0.352 5.352 21 C 0.064 3.936 22 H 0.071 0.929 23 H 0.023 0.977 24 H 0.052 0.948 25 H 0.078 0.922 26 H 0.106 0.894 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.129 0.871 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.128 0.872 35 H 0.031 0.969 36 H 0.147 0.853 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.497 -10.663 1.024 10.999 hybrid contribution -0.509 0.381 0.547 0.839 sum 1.988 -10.282 1.570 10.589 Atomic orbital electron populations 1.69954 1.06011 1.26890 1.51060 1.24974 0.94825 0.99219 0.95572 0.86560 0.79387 0.82758 0.78686 1.20315 1.21513 1.20189 1.21128 0.93697 0.89468 1.49792 0.91593 1.19922 0.89354 0.86246 0.96799 1.58637 1.34146 1.03584 1.23033 1.22059 0.95557 1.01248 0.87327 1.22225 1.01882 0.96104 0.99730 1.20453 1.01059 0.97699 0.91554 1.19993 1.02542 0.96543 0.95475 1.20827 0.99553 0.97033 0.94849 1.20757 1.04180 0.98939 0.93806 1.20790 0.99516 0.93488 0.98929 1.19735 1.01221 0.95926 0.92969 1.20827 0.87572 0.99103 0.95065 1.58525 1.13716 1.07874 1.55108 1.18626 0.91277 0.91497 0.92234 0.92886 0.97737 0.94771 0.92152 0.89375 0.90817 0.91653 0.91506 0.91485 0.87138 0.87035 0.87033 0.87164 0.96901 0.85269 0.86375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.16 13.29 55.43 0.74 -25.43 16 2 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 3 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.50 -13.69 8.50 -34.44 -0.29 -13.98 16 8 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 9 C 0.20 5.04 3.59 -4.97 -0.02 5.02 16 10 N -0.48 -10.49 3.88 -172.64 -0.67 -11.16 16 11 C 0.07 1.29 5.72 -3.88 -0.02 1.27 16 12 C -0.16 -2.78 6.02 -26.50 -0.16 -2.94 16 13 C -0.07 -1.11 5.82 -27.75 -0.16 -1.27 16 14 C -0.14 -2.55 5.75 -104.33 -0.60 -3.15 16 15 C -0.10 -1.63 9.63 -39.51 -0.38 -2.01 16 16 C -0.16 -2.39 10.05 -39.62 -0.40 -2.79 16 17 C -0.11 -1.76 9.64 -39.71 -0.38 -2.14 16 18 C -0.10 -1.82 5.04 -104.27 -0.53 -2.35 16 19 C 0.10 1.96 6.34 -4.97 -0.03 1.93 16 20 N -0.82 -14.02 9.65 -11.40 -0.11 -14.13 16 21 C 0.16 3.30 5.08 -83.85 -0.43 2.88 16 22 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 23 H 0.00 0.13 6.16 -51.93 -0.32 -0.19 16 24 H 0.03 0.94 5.78 -51.93 -0.30 0.64 16 25 H 0.06 1.10 8.11 -51.93 -0.42 0.68 16 26 H 0.09 1.82 7.43 -51.93 -0.39 1.43 16 27 H 0.07 1.46 6.31 -51.93 -0.33 1.13 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.11 1.45 8.06 -52.48 -0.42 1.02 16 32 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 33 H 0.11 1.55 8.02 -52.48 -0.42 1.13 16 34 H 0.11 2.52 5.06 -51.93 -0.26 2.26 16 35 H 0.01 0.22 7.97 -51.93 -0.41 -0.20 16 36 H 0.34 5.09 9.08 -39.29 -0.36 4.74 16 37 H 0.33 4.88 8.92 -39.29 -0.35 4.53 16 LS Contribution 293.79 15.07 4.43 4.43 Total: -1.00 -29.30 293.79 -9.35 -38.65 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -5.22 Total: 9.32 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: -3.50 Total: -18.09 kcal Atomic # 7 Polarization: -50.67 SS G_CDS: -0.04 Total: -50.71 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -29.30 -9.35 -38.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702868375.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.255 kcal (2) G-P(sol) polarization free energy of solvation -29.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds