Wall clock time and date at job start Mon Mar 30 2020 03:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99920 * 2 1 4 4 H 1.48500 * 109.47113 * 240.00125 * 3 2 1 5 5 H 1.48503 * 109.47198 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47250 * 119.99858 * 3 2 1 7 7 C 1.37873 * 120.00234 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00309 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99784 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.47065 * 179.97438 * 9 7 2 11 11 C 1.46421 * 110.99885 * 283.75156 * 10 9 7 12 12 C 1.53392 * 108.66799 * 287.78315 * 11 10 9 13 13 C 1.53048 * 107.97020 * 291.75721 * 12 11 10 14 14 C 1.50921 * 109.58449 * 47.34516 * 13 12 11 15 15 C 1.38610 * 118.10297 * 164.60103 * 14 13 12 16 16 C 1.38054 * 120.48998 * 179.37485 * 15 14 13 17 17 C 1.38315 * 119.88346 * 0.02562 * 16 15 14 18 18 C 1.37800 * 119.95501 * 0.14495 * 17 16 15 19 19 C 1.50704 * 119.79095 * 179.97438 * 18 17 16 20 20 N 1.46900 * 109.46915 * 101.24849 * 19 18 17 21 21 C 1.38377 * 122.03383 * 344.24612 * 14 13 12 22 22 H 0.97003 * 119.99846 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47330 * 59.99952 * 9 7 2 24 24 H 1.09002 * 109.46824 * 299.99591 * 9 7 2 25 25 H 1.08998 * 109.60310 * 168.03609 * 11 10 9 26 26 H 1.08999 * 109.74157 * 47.61827 * 11 10 9 27 27 H 1.09001 * 109.76712 * 51.38780 * 12 11 10 28 28 H 1.08998 * 109.76729 * 172.12086 * 12 11 10 29 29 H 1.08998 * 109.43817 * 167.43903 * 13 12 11 30 30 H 1.09000 * 109.43693 * 287.32749 * 13 12 11 31 31 H 1.08007 * 119.75472 * 359.35766 * 15 14 13 32 32 H 1.07998 * 120.05667 * 179.97438 * 16 15 14 33 33 H 1.08005 * 120.01714 * 180.17013 * 17 16 15 34 34 H 1.09001 * 109.47456 * 221.25094 * 19 18 17 35 35 H 1.09006 * 109.46844 * 341.25501 * 19 18 17 36 36 H 1.00896 * 111.00247 * 184.75027 * 20 19 18 37 37 H 1.00901 * 111.00462 * 308.70056 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 2.7937 -3.8033 -1.3273 12 6 1.7287 -4.4002 -2.2559 13 6 1.4384 -5.8274 -1.7857 14 6 1.2343 -5.8357 -0.2903 15 6 0.6476 -6.9533 0.2824 16 6 0.4493 -7.0186 1.6471 17 6 0.8375 -5.9623 2.4512 18 6 1.4182 -4.8465 1.8886 19 6 1.8393 -3.6975 2.7681 20 7 3.2911 -3.7535 2.9853 21 6 1.6198 -4.7739 0.5090 22 1 -0.4850 0.8401 0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6241 -2.5566 0.8904 25 1 3.6420 -4.4842 -1.2586 26 1 3.1262 -2.8432 -1.7217 27 1 0.8183 -3.8029 -2.2048 28 1 2.1009 -4.4180 -3.2802 29 1 0.5383 -6.1955 -2.2779 30 1 2.2799 -6.4716 -2.0406 31 1 0.3430 -7.7790 -0.3436 32 1 -0.0089 -7.8926 2.0859 33 1 0.6860 -6.0123 3.5194 34 1 1.5804 -2.7556 2.2843 35 1 1.3256 -3.7667 3.7270 36 1 3.5875 -3.0399 3.6340 37 1 3.5745 -4.6691 3.3008 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702868375.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:59 Heat of formation + Delta-G solvation = 9.250648 kcal Electronic energy + Delta-G solvation = -18413.430871 eV Core-core repulsion = 15768.152141 eV Total energy + Delta-G solvation = -2645.278730 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.47550 -37.93374 -36.25024 -34.80744 -33.57270 -31.15965 -30.64650 -29.01501 -25.93064 -25.71649 -24.11035 -23.61547 -21.45132 -20.26097 -18.36635 -17.46077 -17.32435 -16.75025 -16.39347 -16.02778 -15.40241 -15.04881 -14.99145 -14.76194 -14.37687 -13.99525 -13.82292 -13.54766 -13.39991 -13.11199 -12.89795 -12.66247 -12.45038 -12.15652 -12.06906 -11.82747 -11.68215 -11.45226 -11.22570 -10.56367 -9.93200 -9.49104 -9.29137 -8.43254 -8.16153 -6.25807 0.52806 0.61839 1.41182 1.43685 1.51743 2.41540 2.87509 3.14687 3.33255 3.87456 3.90313 4.00463 4.09390 4.14176 4.24914 4.43731 4.49774 4.56005 4.64478 4.73938 4.83615 4.93794 4.96803 5.04694 5.11592 5.15226 5.31092 5.35735 5.42380 5.63603 5.65798 5.71785 5.76176 6.08448 6.19000 6.41483 6.46139 6.80298 6.88355 6.96352 7.42512 8.92838 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.023837 B = 0.008232 C = 0.006997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.359211 B = 3400.594600 C = 4000.525356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.005 3.995 3 Si 0.964 3.036 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.510 4.510 8 H 0.058 0.942 9 C 0.223 3.777 10 N -0.488 5.488 11 C 0.064 3.936 12 C -0.154 4.154 13 C -0.066 4.066 14 C -0.153 4.153 15 C -0.105 4.105 16 C -0.146 4.146 17 C -0.112 4.112 18 C -0.116 4.116 19 C 0.112 3.888 20 N -0.831 5.831 21 C 0.120 3.880 22 H 0.263 0.737 23 H -0.027 1.027 24 H 0.007 0.993 25 H 0.076 0.924 26 H 0.065 0.935 27 H 0.038 0.962 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.144 0.856 32 H 0.150 0.850 33 H 0.136 0.864 34 H 0.062 0.938 35 H 0.029 0.971 36 H 0.343 0.657 37 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.642 -13.322 1.651 13.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.193 4.193 3 Si 0.789 3.211 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.548 4.548 8 H 0.076 0.924 9 C 0.100 3.900 10 N -0.202 5.202 11 C -0.064 4.064 12 C -0.193 4.193 13 C -0.103 4.103 14 C -0.156 4.156 15 C -0.124 4.124 16 C -0.164 4.164 17 C -0.131 4.131 18 C -0.118 4.118 19 C -0.018 4.018 20 N -0.362 5.362 21 C 0.021 3.979 22 H 0.072 0.928 23 H -0.010 1.010 24 H 0.025 0.975 25 H 0.094 0.906 26 H 0.084 0.916 27 H 0.057 0.943 28 H 0.110 0.890 29 H 0.104 0.896 30 H 0.110 0.890 31 H 0.162 0.838 32 H 0.167 0.833 33 H 0.153 0.847 34 H 0.081 0.919 35 H 0.047 0.953 36 H 0.156 0.844 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.957 -12.827 1.160 13.214 hybrid contribution -0.675 0.920 0.550 1.267 sum 2.281 -11.907 1.710 12.243 Atomic orbital electron populations 1.70082 1.07557 1.27746 1.52094 1.25810 0.95627 1.02770 0.95103 0.85511 0.78169 0.78368 0.79002 1.19438 1.20976 1.19557 1.21340 0.93362 0.90745 1.49359 0.92378 1.19415 0.89196 0.87540 0.93819 1.58507 1.33650 1.03708 1.24370 1.22071 0.96656 1.00633 0.87058 1.22130 0.99531 0.96831 1.00786 1.20503 1.02919 0.96518 0.90353 1.20346 1.02206 0.96513 0.96580 1.21228 0.98404 0.97048 0.95713 1.21240 1.02207 0.99370 0.93596 1.21092 0.98655 0.92863 1.00458 1.19936 1.02218 0.96878 0.92791 1.20558 0.88715 0.97167 0.95374 1.58419 1.12844 1.09067 1.55827 1.18870 0.94000 0.91739 0.93248 0.92829 1.00975 0.97544 0.90578 0.91630 0.94285 0.89006 0.89567 0.89041 0.83778 0.83276 0.84652 0.91943 0.95308 0.84383 0.84848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.43 13.29 21.45 0.28 -56.14 16 2 C 0.00 0.27 5.46 84.65 0.46 0.73 16 3 Si 0.96 44.90 29.54 68.60 2.03 46.93 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 6 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.51 -29.11 8.50 25.60 0.22 -28.89 16 8 H 0.06 3.33 7.81 -2.91 -0.02 3.31 16 9 C 0.22 12.08 3.59 85.56 0.31 12.38 16 10 N -0.49 -22.14 3.88 -700.12 -2.72 -24.85 16 11 C 0.06 2.54 5.72 86.53 0.49 3.03 16 12 C -0.15 -5.32 6.02 30.74 0.18 -5.13 16 13 C -0.07 -1.93 5.82 29.93 0.17 -1.75 16 14 C -0.15 -5.25 5.75 -19.67 -0.11 -5.36 16 15 C -0.11 -2.94 9.63 22.31 0.21 -2.72 16 16 C -0.15 -3.84 10.05 22.24 0.22 -3.61 16 17 C -0.11 -3.38 9.64 22.18 0.21 -3.16 16 18 C -0.12 -4.38 5.04 -19.63 -0.10 -4.48 16 19 C 0.11 4.32 6.34 85.56 0.54 4.87 16 20 N -0.83 -28.45 9.65 -189.99 -1.83 -30.28 16 21 C 0.12 4.88 5.08 38.30 0.19 5.08 16 22 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 23 H -0.03 -1.61 6.16 -2.39 -0.01 -1.62 16 24 H 0.01 0.39 5.78 -2.39 -0.01 0.38 16 25 H 0.08 2.75 8.11 -2.39 -0.02 2.73 16 26 H 0.07 2.84 7.43 -2.39 -0.02 2.82 16 27 H 0.04 1.61 6.31 -2.39 -0.02 1.59 16 28 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 29 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 32 H 0.15 2.83 8.06 -2.91 -0.02 2.80 16 33 H 0.14 3.36 8.02 -2.91 -0.02 3.34 16 34 H 0.06 3.04 5.06 -2.39 -0.01 3.03 16 35 H 0.03 0.98 7.97 -2.38 -0.02 0.97 16 36 H 0.34 10.51 9.08 -89.70 -0.81 9.70 16 37 H 0.34 9.91 8.92 -89.69 -0.80 9.11 16 Total: -1.00 -66.37 293.79 0.25 -66.12 By element: Atomic # 1 Polarization: 27.78 SS G_CDS: -0.53 Total: 27.26 kcal Atomic # 6 Polarization: -32.05 SS G_CDS: 3.02 Total: -29.03 kcal Atomic # 7 Polarization: -107.01 SS G_CDS: -4.26 Total: -111.27 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -66.37 0.25 -66.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702868375.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.372 kcal (2) G-P(sol) polarization free energy of solvation -66.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds