Wall clock time and date at job start Mon Mar 30 2020 03:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99604 * 2 1 4 4 H 1.48501 * 109.46837 * 240.00201 * 3 2 1 5 5 H 1.48499 * 109.47421 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46921 * 120.00376 * 3 2 1 7 7 C 1.37874 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99751 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00269 * 0.02562 * 7 2 1 10 10 H 1.09002 * 110.29408 * 60.66761 * 9 7 2 11 11 C 1.54385 * 110.32246 * 298.54569 * 9 7 2 12 12 N 1.48556 * 104.59520 * 217.25314 * 11 9 7 13 13 C 1.46904 * 111.00162 * 159.03833 * 12 11 9 14 14 C 1.50695 * 109.47018 * 174.70881 * 13 12 11 15 15 C 1.38242 * 119.99855 * 269.72208 * 14 13 12 16 16 C 1.38231 * 120.00185 * 179.78867 * 15 14 13 17 17 C 1.38245 * 119.99815 * 0.46854 * 16 15 14 18 18 C 1.38228 * 119.99798 * 359.76595 * 17 16 15 19 19 C 1.38233 * 120.00375 * 0.02562 * 18 17 16 20 20 C 1.48566 * 104.22488 * 39.48059 * 12 11 9 21 21 C 1.54264 * 110.32622 * 182.90939 * 9 7 2 22 22 H 1.08995 * 110.31937 * 237.79196 * 21 9 7 23 23 N 1.46900 * 110.32089 * 359.97438 * 21 9 7 24 24 H 0.96995 * 120.00519 * 359.97438 * 1 2 3 25 25 H 1.08997 * 110.41336 * 98.47305 * 11 9 7 26 26 H 1.09001 * 110.50872 * 336.07791 * 11 9 7 27 27 H 1.08998 * 109.46524 * 294.70228 * 13 12 11 28 28 H 1.08991 * 109.46946 * 54.70569 * 13 12 11 29 29 H 1.08003 * 119.99687 * 0.02562 * 15 14 13 30 30 H 1.08000 * 120.00230 * 180.25415 * 16 15 14 31 31 H 1.08002 * 119.99692 * 179.78931 * 17 16 15 32 32 H 1.08004 * 120.00163 * 180.02562 * 18 17 16 33 33 H 1.08000 * 120.00253 * 179.97438 * 19 18 17 34 34 H 1.08999 * 110.41049 * 79.29303 * 20 12 11 35 35 H 1.08999 * 110.41330 * 201.74251 * 20 12 11 36 36 H 1.00896 * 110.99933 * 177.08858 * 23 21 9 37 37 H 1.00892 * 111.00272 * 301.04709 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 1 0.6287 -2.5756 -0.8933 11 6 0.3834 -2.6185 1.2696 12 7 0.4631 -4.0539 1.6438 13 6 0.1231 -4.2486 3.0597 14 6 0.0878 -5.7229 3.3697 15 6 -1.0925 -6.4296 3.2338 16 6 -1.1240 -7.7829 3.5140 17 6 0.0226 -8.4276 3.9393 18 6 1.2016 -7.7199 4.0797 19 6 1.2342 -6.3675 3.7954 20 6 1.8782 -4.4219 1.3806 21 6 2.2344 -3.6856 0.0713 22 1 2.0949 -4.3460 -0.7845 23 7 3.6193 -3.1981 0.1201 24 1 -0.4851 0.8400 0.0004 25 1 -0.6476 -2.3385 1.0539 26 1 0.7870 -1.9948 2.0673 27 1 0.8743 -3.7641 3.6835 28 1 -0.8544 -3.8112 3.2620 29 1 -1.9892 -5.9252 2.9052 30 1 -2.0452 -8.3359 3.4039 31 1 -0.0029 -9.4842 4.1614 32 1 2.0976 -8.2235 4.4116 33 1 2.1553 -5.8145 3.9056 34 1 2.5174 -4.0805 2.1947 35 1 1.9724 -5.4997 1.2483 36 1 4.2691 -3.9641 0.2158 37 1 3.8352 -2.6402 -0.6923 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709965139.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:52 Heat of formation + Delta-G solvation = 38.249899 kcal Electronic energy + Delta-G solvation = -17745.232884 eV Core-core repulsion = 15101.211656 eV Total energy + Delta-G solvation = -2644.021228 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.30126 -37.87208 -34.05372 -32.38417 -31.23806 -30.74522 -28.48436 -27.05587 -24.99373 -23.65365 -22.38935 -21.05267 -20.08467 -18.92006 -16.66280 -16.22633 -15.36853 -15.07862 -14.88733 -14.67465 -14.31326 -14.07293 -13.30836 -13.25306 -13.10401 -12.56457 -12.30570 -11.93360 -11.81235 -11.16067 -11.07940 -10.87246 -10.67421 -10.61051 -10.37977 -10.32769 -9.77451 -9.23999 -8.91307 -8.75819 -8.58902 -8.34017 -7.71903 -7.58679 -5.94913 -3.94317 1.51726 1.56119 3.36523 3.41320 3.44371 3.92561 4.49773 4.87323 4.99935 5.05539 5.13317 5.26202 5.38527 5.54367 5.61412 5.68017 5.74975 5.85327 5.97831 6.02150 6.21488 6.23118 6.27136 6.52872 6.57220 6.61613 6.63161 6.86098 6.92369 7.12111 7.16251 7.48932 7.61936 7.77724 7.88673 8.07213 8.08368 8.34863 8.60109 9.12487 9.69963 11.15818 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.039196 B = 0.005405 C = 0.005057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.183249 B = 5178.931933 C = 5535.979678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.502 4.502 8 H 0.080 0.920 9 C 0.053 3.947 10 H 0.031 0.969 11 C 0.065 3.935 12 N -0.516 5.516 13 C 0.081 3.919 14 C -0.062 4.062 15 C -0.102 4.102 16 C -0.124 4.124 17 C -0.131 4.131 18 C -0.124 4.124 19 C -0.114 4.114 20 C 0.047 3.953 21 C 0.087 3.913 22 H 0.020 0.980 23 N -0.825 5.825 24 H 0.258 0.742 25 H 0.073 0.927 26 H 0.036 0.964 27 H 0.040 0.960 28 H 0.078 0.922 29 H 0.122 0.878 30 H 0.118 0.882 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.045 0.955 35 H 0.056 0.944 36 H 0.311 0.689 37 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.820 -12.891 6.308 14.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.540 4.540 8 H 0.098 0.902 9 C 0.034 3.966 10 H 0.049 0.951 11 C -0.062 4.062 12 N -0.240 5.240 13 C -0.048 4.048 14 C -0.062 4.062 15 C -0.121 4.121 16 C -0.142 4.142 17 C -0.149 4.149 18 C -0.142 4.142 19 C -0.133 4.133 20 C -0.081 4.081 21 C -0.024 4.024 22 H 0.038 0.962 23 N -0.356 5.356 24 H 0.068 0.932 25 H 0.091 0.909 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.096 0.904 29 H 0.140 0.860 30 H 0.136 0.864 31 H 0.134 0.866 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.121 0.879 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.042 -12.678 6.655 14.318 hybrid contribution 1.055 0.844 -0.304 1.385 sum 1.097 -11.834 6.351 13.475 Atomic orbital electron populations 1.69968 1.05894 1.26431 1.51287 1.25045 0.94795 0.99081 0.95524 0.86667 0.79474 0.83344 0.78462 1.20477 1.21690 1.20454 1.21276 0.94120 0.89287 1.49361 0.90209 1.19436 0.91480 0.92046 0.93684 0.95137 1.23189 1.01294 0.83123 0.98566 1.65532 1.20770 1.21973 1.15753 1.21183 1.01484 0.91043 0.91063 1.19941 0.93279 0.96157 0.96859 1.21063 0.98003 0.94038 0.98983 1.21109 0.98175 0.94787 1.00129 1.21057 0.93263 0.99484 1.01113 1.21065 0.97854 0.94394 1.00869 1.21096 0.97936 0.94656 0.99601 1.23006 0.89514 0.97944 0.97660 1.22086 0.89925 0.96468 0.93945 0.96245 1.58965 1.02753 1.24897 1.48990 0.93204 0.90894 0.94567 0.94176 0.90374 0.86016 0.86445 0.86645 0.86524 0.86438 0.93685 0.92521 0.87860 0.83740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.61 12.35 55.43 0.68 -24.93 16 2 C 0.06 1.54 5.33 -17.82 -0.09 1.45 16 3 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.50 -13.37 7.87 -34.44 -0.27 -13.64 16 8 H 0.08 2.08 5.44 -52.48 -0.29 1.79 16 9 C 0.05 1.32 2.99 -90.39 -0.27 1.05 16 10 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 11 C 0.07 1.55 5.04 -2.18 -0.01 1.54 16 12 N -0.52 -10.41 5.36 -231.41 -1.24 -11.65 16 13 C 0.08 1.40 4.97 -4.98 -0.02 1.38 16 14 C -0.06 -0.95 5.10 -104.62 -0.53 -1.48 16 15 C -0.10 -1.45 9.70 -39.58 -0.38 -1.83 16 16 C -0.12 -1.52 10.05 -39.58 -0.40 -1.92 16 17 C -0.13 -1.53 10.05 -39.58 -0.40 -1.93 16 18 C -0.12 -1.52 10.05 -39.59 -0.40 -1.92 16 19 C -0.11 -1.61 8.73 -39.58 -0.35 -1.96 16 20 C 0.05 0.91 5.18 -2.18 -0.01 0.90 16 21 C 0.09 1.83 4.17 -66.33 -0.28 1.55 16 22 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 23 N -0.83 -15.72 7.78 -3.49 -0.03 -15.75 16 24 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 25 H 0.07 1.87 7.94 -51.93 -0.41 1.45 16 26 H 0.04 0.93 7.71 -51.93 -0.40 0.53 16 27 H 0.04 0.71 7.82 -51.93 -0.41 0.30 16 28 H 0.08 1.32 8.07 -51.93 -0.42 0.90 16 29 H 0.12 1.63 8.06 -52.48 -0.42 1.21 16 30 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 31 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 32 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 33 H 0.12 1.60 8.06 -52.49 -0.42 1.17 16 34 H 0.04 0.89 7.74 -51.93 -0.40 0.48 16 35 H 0.06 1.02 7.81 -51.93 -0.41 0.62 16 36 H 0.31 4.93 9.06 -39.29 -0.36 4.58 16 37 H 0.35 6.63 7.53 -39.30 -0.30 6.34 16 LS Contribution 299.59 15.07 4.51 4.51 Total: -1.00 -28.68 299.59 -9.98 -38.66 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -5.48 Total: 9.61 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: -3.42 Total: -16.82 kcal Atomic # 7 Polarization: -51.73 SS G_CDS: -0.58 Total: -52.32 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.68 -9.98 -38.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709965139.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.911 kcal (2) G-P(sol) polarization free energy of solvation -28.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds