Wall clock time and date at job start Mon Mar 30 2020 03:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99604 * 2 1 4 4 H 1.48501 * 109.46837 * 240.00201 * 3 2 1 5 5 H 1.48499 * 109.47421 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46921 * 120.00376 * 3 2 1 7 7 C 1.37874 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99751 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00269 * 0.02562 * 7 2 1 10 10 H 1.09002 * 110.29408 * 60.66761 * 9 7 2 11 11 C 1.54385 * 110.32246 * 298.54569 * 9 7 2 12 12 N 1.48556 * 104.59520 * 217.25314 * 11 9 7 13 13 C 1.46904 * 111.00162 * 159.03833 * 12 11 9 14 14 C 1.50695 * 109.47018 * 174.70881 * 13 12 11 15 15 C 1.38242 * 119.99855 * 269.72208 * 14 13 12 16 16 C 1.38231 * 120.00185 * 179.78867 * 15 14 13 17 17 C 1.38245 * 119.99815 * 0.46854 * 16 15 14 18 18 C 1.38228 * 119.99798 * 359.76595 * 17 16 15 19 19 C 1.38233 * 120.00375 * 0.02562 * 18 17 16 20 20 C 1.48566 * 104.22488 * 39.48059 * 12 11 9 21 21 C 1.54264 * 110.32622 * 182.90939 * 9 7 2 22 22 H 1.08995 * 110.31937 * 237.79196 * 21 9 7 23 23 N 1.46900 * 110.32089 * 359.97438 * 21 9 7 24 24 H 0.96995 * 120.00519 * 359.97438 * 1 2 3 25 25 H 1.08997 * 110.41336 * 98.47305 * 11 9 7 26 26 H 1.09001 * 110.50872 * 336.07791 * 11 9 7 27 27 H 1.08998 * 109.46524 * 294.70228 * 13 12 11 28 28 H 1.08991 * 109.46946 * 54.70569 * 13 12 11 29 29 H 1.08003 * 119.99687 * 0.02562 * 15 14 13 30 30 H 1.08000 * 120.00230 * 180.25415 * 16 15 14 31 31 H 1.08002 * 119.99692 * 179.78931 * 17 16 15 32 32 H 1.08004 * 120.00163 * 180.02562 * 18 17 16 33 33 H 1.08000 * 120.00253 * 179.97438 * 19 18 17 34 34 H 1.08999 * 110.41049 * 79.29303 * 20 12 11 35 35 H 1.08999 * 110.41330 * 201.74251 * 20 12 11 36 36 H 1.00896 * 110.99933 * 177.08858 * 23 21 9 37 37 H 1.00892 * 111.00272 * 301.04709 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 1 0.6287 -2.5756 -0.8933 11 6 0.3834 -2.6185 1.2696 12 7 0.4631 -4.0539 1.6438 13 6 0.1231 -4.2486 3.0597 14 6 0.0878 -5.7229 3.3697 15 6 -1.0925 -6.4296 3.2338 16 6 -1.1240 -7.7829 3.5140 17 6 0.0226 -8.4276 3.9393 18 6 1.2016 -7.7199 4.0797 19 6 1.2342 -6.3675 3.7954 20 6 1.8782 -4.4219 1.3806 21 6 2.2344 -3.6856 0.0713 22 1 2.0949 -4.3460 -0.7845 23 7 3.6193 -3.1981 0.1201 24 1 -0.4851 0.8400 0.0004 25 1 -0.6476 -2.3385 1.0539 26 1 0.7870 -1.9948 2.0673 27 1 0.8743 -3.7641 3.6835 28 1 -0.8544 -3.8112 3.2620 29 1 -1.9892 -5.9252 2.9052 30 1 -2.0452 -8.3359 3.4039 31 1 -0.0029 -9.4842 4.1614 32 1 2.0976 -8.2235 4.4116 33 1 2.1553 -5.8145 3.9056 34 1 2.5174 -4.0805 2.1947 35 1 1.9724 -5.4997 1.2483 36 1 4.2691 -3.9641 0.2158 37 1 3.8352 -2.6402 -0.6923 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709965139.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:51 Heat of formation + Delta-G solvation = 19.272336 kcal Electronic energy + Delta-G solvation = -17746.055813 eV Core-core repulsion = 15101.211656 eV Total energy + Delta-G solvation = -2644.844157 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.55813 -39.36217 -35.63604 -34.34775 -32.56304 -31.73549 -30.25775 -28.61098 -26.76396 -25.34284 -23.40195 -22.38664 -21.64662 -20.70901 -18.35543 -17.51263 -17.05365 -16.55479 -16.19406 -16.08692 -15.90718 -15.80504 -14.84410 -14.50886 -14.22418 -14.15093 -13.85677 -13.36411 -13.27945 -12.85390 -12.70512 -12.61661 -12.29742 -12.22199 -11.85832 -11.77015 -11.58607 -11.11706 -10.89984 -10.48001 -9.75664 -9.67509 -9.31720 -9.23897 -8.04979 -6.10208 0.48761 0.56730 1.45337 1.47046 1.53940 2.49124 2.85480 3.25601 3.38846 3.77891 3.94815 4.03310 4.12577 4.21943 4.27013 4.35631 4.42454 4.54584 4.62465 4.71759 4.77522 4.81984 4.84121 5.06790 5.15778 5.22500 5.26685 5.53676 5.61154 5.66631 5.70087 5.78472 5.91189 5.98832 6.16827 6.24025 6.35532 6.64938 6.88874 7.04927 7.58231 9.05291 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.039196 B = 0.005405 C = 0.005057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.183249 B = 5178.931933 C = 5535.979678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.955 3.045 4 H -0.269 1.269 5 H -0.293 1.293 6 H -0.276 1.276 7 C -0.508 4.508 8 H 0.088 0.912 9 C 0.043 3.957 10 H -0.005 1.005 11 C 0.084 3.916 12 N -0.518 5.518 13 C 0.084 3.916 14 C -0.083 4.083 15 C -0.118 4.118 16 C -0.125 4.125 17 C -0.126 4.126 18 C -0.124 4.124 19 C -0.125 4.125 20 C 0.060 3.940 21 C 0.093 3.907 22 H 0.025 0.975 23 N -0.828 5.828 24 H 0.256 0.744 25 H 0.044 0.956 26 H 0.010 0.990 27 H 0.035 0.965 28 H 0.073 0.927 29 H 0.119 0.881 30 H 0.142 0.858 31 H 0.148 0.852 32 H 0.143 0.857 33 H 0.118 0.882 34 H 0.043 0.957 35 H 0.077 0.923 36 H 0.334 0.666 37 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.158 -14.918 7.074 16.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.782 3.218 4 H -0.194 1.194 5 H -0.219 1.219 6 H -0.202 1.202 7 C -0.547 4.547 8 H 0.105 0.895 9 C 0.024 3.976 10 H 0.013 0.987 11 C -0.044 4.044 12 N -0.242 5.242 13 C -0.044 4.044 14 C -0.083 4.083 15 C -0.137 4.137 16 C -0.143 4.143 17 C -0.144 4.144 18 C -0.141 4.141 19 C -0.144 4.144 20 C -0.068 4.068 21 C -0.019 4.019 22 H 0.043 0.957 23 N -0.361 5.361 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.028 0.972 27 H 0.053 0.947 28 H 0.092 0.908 29 H 0.137 0.863 30 H 0.160 0.840 31 H 0.165 0.835 32 H 0.161 0.839 33 H 0.136 0.864 34 H 0.061 0.939 35 H 0.095 0.905 36 H 0.147 0.853 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.405 -14.730 7.424 16.555 hybrid contribution 0.618 1.364 -0.518 1.585 sum 2.023 -13.366 6.905 15.179 Atomic orbital electron populations 1.70118 1.07337 1.26893 1.52576 1.25827 0.95539 1.02469 0.95548 0.85654 0.78161 0.79280 0.78698 1.19366 1.21928 1.20173 1.21634 0.94633 0.90063 1.48330 0.89454 1.19401 0.92229 0.93556 0.92463 0.98706 1.22725 0.99082 0.85159 0.97404 1.65468 1.21693 1.18922 1.18083 1.21150 1.00924 0.93252 0.89052 1.19767 0.94661 0.94664 0.99242 1.21185 0.97576 0.95217 0.99680 1.21426 0.99692 0.93972 0.99194 1.21485 0.92521 1.01028 0.99346 1.21398 0.99271 0.93585 0.99896 1.21191 0.97413 0.95740 1.00024 1.22927 0.88593 0.98762 0.96552 1.21944 0.90055 0.94790 0.95082 0.95696 1.58822 1.02235 1.26004 1.49019 0.93539 0.93707 0.97152 0.94702 0.90844 0.86290 0.83980 0.83452 0.83883 0.86415 0.93889 0.90473 0.85307 0.83760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.85 12.35 21.45 0.26 -54.58 16 2 C 0.00 0.20 5.33 84.65 0.45 0.65 16 3 Si 0.96 44.29 29.54 68.60 2.03 46.32 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 5 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 6 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 7 C -0.51 -27.44 7.87 25.60 0.20 -27.24 16 8 H 0.09 4.51 5.44 -2.91 -0.02 4.49 16 9 C 0.04 2.20 2.99 -10.64 -0.03 2.17 16 10 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 11 C 0.08 4.19 5.04 86.45 0.44 4.63 16 12 N -0.52 -21.22 5.36 -886.05 -4.75 -25.97 16 13 C 0.08 2.98 4.97 85.55 0.42 3.41 16 14 C -0.08 -2.49 5.10 -19.87 -0.10 -2.59 16 15 C -0.12 -3.21 9.70 22.27 0.22 -3.00 16 16 C -0.13 -2.72 10.05 22.27 0.22 -2.50 16 17 C -0.13 -2.45 10.05 22.27 0.22 -2.23 16 18 C -0.12 -2.62 10.05 22.27 0.22 -2.40 16 19 C -0.13 -3.29 8.73 22.27 0.19 -3.10 16 20 C 0.06 2.26 5.18 86.45 0.45 2.71 16 21 C 0.09 3.85 4.17 45.81 0.19 4.04 16 22 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 23 N -0.83 -30.38 7.78 -164.97 -1.28 -31.66 16 24 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 25 H 0.04 2.44 7.94 -2.39 -0.02 2.42 16 26 H 0.01 0.55 7.71 -2.39 -0.02 0.53 16 27 H 0.03 1.25 7.82 -2.39 -0.02 1.24 16 28 H 0.07 2.60 8.07 -2.39 -0.02 2.58 16 29 H 0.12 3.19 8.06 -2.91 -0.02 3.16 16 30 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 31 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 32 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 33 H 0.12 3.01 8.06 -2.91 -0.02 2.99 16 34 H 0.04 1.64 7.74 -2.39 -0.02 1.63 16 35 H 0.08 2.62 7.81 -2.39 -0.02 2.60 16 36 H 0.33 9.79 9.06 -89.70 -0.81 8.98 16 37 H 0.35 12.84 7.53 -89.70 -0.68 12.16 16 Total: -1.00 -62.60 299.59 -1.06 -63.66 By element: Atomic # 1 Polarization: 28.11 SS G_CDS: -0.42 Total: 27.69 kcal Atomic # 6 Polarization: -28.55 SS G_CDS: 3.10 Total: -25.45 kcal Atomic # 7 Polarization: -106.45 SS G_CDS: -5.77 Total: -112.21 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -62.60 -1.06 -63.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709965139.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.931 kcal (2) G-P(sol) polarization free energy of solvation -62.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds