Wall clock time and date at job start Mon Mar 30 2020 03:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99927 * 2 1 4 4 H 1.48502 * 109.47087 * 239.99690 * 3 2 1 5 5 H 1.48501 * 109.47059 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47145 * 119.99998 * 3 2 1 7 7 C 1.37874 * 119.99649 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99677 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00437 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47360 * 179.97438 * 9 7 2 11 11 C 1.46498 * 120.00184 * 270.00092 * 10 9 7 12 12 C 1.53001 * 109.47108 * 269.99848 * 11 10 9 13 13 C 1.53935 * 113.73416 * 271.72910 * 12 11 10 14 14 N 1.47964 * 86.18109 * 221.92127 * 13 12 11 15 15 C 1.47960 * 90.76241 * 24.68628 * 14 13 12 16 16 C 1.39678 * 120.00138 * 89.99664 * 10 9 7 17 17 C 1.38915 * 120.06984 * 0.02562 * 16 10 9 18 18 C 1.38104 * 119.92359 * 179.97438 * 17 16 10 19 19 C 1.38288 * 120.07208 * 359.97438 * 18 17 16 20 20 C 1.38290 * 120.15288 * 0.02562 * 19 18 17 21 21 C 1.38100 * 120.07105 * 359.97438 * 20 19 18 22 22 H 0.97006 * 120.00477 * 0.02562 * 1 2 3 23 23 H 1.08994 * 109.47223 * 60.00079 * 9 7 2 24 24 H 1.09004 * 109.47132 * 299.99732 * 9 7 2 25 25 H 1.08995 * 109.47144 * 29.99687 * 11 10 9 26 26 H 1.09000 * 109.47505 * 149.99538 * 11 10 9 27 27 H 1.09003 * 112.93774 * 43.42728 * 12 11 10 28 28 H 1.09004 * 113.75858 * 336.23413 * 13 12 11 29 29 H 1.08996 * 113.76430 * 107.60276 * 13 12 11 30 30 H 1.00897 * 111.00283 * 137.57767 * 14 13 12 31 31 H 1.08999 * 113.75932 * 220.99864 * 15 14 13 32 32 H 1.09003 * 113.85775 * 89.64261 * 15 14 13 33 33 H 1.07998 * 120.03739 * 359.69591 * 17 16 10 34 34 H 1.08001 * 119.96576 * 179.97438 * 18 17 16 35 35 H 1.08007 * 119.92458 * 180.02562 * 19 18 17 36 36 H 1.07997 * 119.96313 * 180.02562 * 20 19 18 37 37 H 1.08007 * 120.03349 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.6790 -4.1695 -1.2682 12 6 1.7483 -5.3007 -1.7098 13 6 2.1402 -6.6799 -1.1497 14 7 1.8308 -7.2054 -2.4978 15 6 2.0879 -5.8769 -3.0963 16 6 2.6568 -4.1435 1.2102 17 6 2.2061 -3.6170 2.4141 18 6 2.6565 -4.1445 3.6083 19 6 3.5547 -5.1960 3.6065 20 6 4.0054 -5.7225 2.4098 21 6 3.5591 -5.1997 1.2120 22 1 -0.4851 0.8401 -0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6240 -2.5567 0.8903 25 1 2.6867 -3.3879 -2.0278 26 1 3.6885 -4.5594 -1.1379 27 1 0.6935 -5.0572 -1.5823 28 1 3.1928 -6.7605 -0.8779 29 1 1.4697 -7.0446 -0.3716 30 1 2.5250 -7.8754 -2.7929 31 1 1.3756 -5.6000 -3.8734 32 1 3.1247 -5.7209 -3.3946 33 1 1.5078 -2.7932 2.4161 34 1 2.3068 -3.7354 4.5447 35 1 3.9050 -5.6070 4.5418 36 1 4.7065 -6.5439 2.4119 37 1 3.9118 -5.6111 0.2777 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710942290.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:36 Heat of formation + Delta-G solvation = 64.938486 kcal Electronic energy + Delta-G solvation = -17857.968573 eV Core-core repulsion = 15215.104648 eV Total energy + Delta-G solvation = -2642.863924 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.67928 -38.40519 -35.48010 -32.73905 -30.56593 -29.73686 -28.64491 -26.30933 -25.87347 -23.94015 -22.74698 -21.45485 -19.94601 -19.26281 -17.01974 -16.60074 -15.94695 -15.50369 -15.08116 -14.77322 -14.22648 -13.88824 -13.51256 -13.14039 -12.80996 -12.74140 -12.41004 -12.08710 -11.79266 -11.49614 -11.26651 -10.99680 -10.88984 -10.68341 -10.65483 -10.29394 -10.23996 -9.93299 -9.71692 -8.97669 -8.81606 -8.51311 -8.27860 -6.50228 -6.03412 -4.18440 2.09092 2.31774 3.26749 3.31526 3.34528 4.00838 4.20877 4.38424 4.57284 4.74294 4.97518 5.20648 5.30134 5.48244 5.49789 5.56728 5.64392 5.79890 5.82338 5.88694 5.98755 6.08244 6.13765 6.19627 6.30619 6.40518 6.52955 6.63270 6.96786 7.07666 7.17597 7.25552 7.27738 7.36259 7.60802 7.79838 8.14701 8.26061 8.48272 8.90346 9.48424 10.94640 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.016468 B = 0.008224 C = 0.005962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.893540 B = 3404.010106 C = 4695.275775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.062 3.938 3 Si 0.896 3.104 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.533 4.533 8 H 0.058 0.942 9 C 0.251 3.749 10 N -0.608 5.608 11 C 0.134 3.866 12 C -0.128 4.128 13 C 0.012 3.988 14 N -0.639 5.639 15 C 0.008 3.992 16 C 0.241 3.759 17 C -0.187 4.187 18 C -0.077 4.077 19 C -0.205 4.205 20 C -0.080 4.080 21 C -0.222 4.222 22 H 0.264 0.736 23 H 0.030 0.970 24 H 0.035 0.965 25 H 0.079 0.921 26 H 0.062 0.938 27 H 0.101 0.899 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.312 0.688 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.131 0.869 34 H 0.110 0.890 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.726 -10.840 -0.690 12.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.723 3.277 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.571 4.571 8 H 0.077 0.923 9 C 0.131 3.869 10 N -0.313 5.313 11 C 0.009 3.991 12 C -0.149 4.149 13 C -0.118 4.118 14 N -0.263 5.263 15 C -0.122 4.122 16 C 0.134 3.866 17 C -0.210 4.210 18 C -0.096 4.096 19 C -0.225 4.225 20 C -0.098 4.098 21 C -0.245 4.245 22 H 0.074 0.926 23 H 0.048 0.952 24 H 0.053 0.947 25 H 0.097 0.903 26 H 0.080 0.920 27 H 0.119 0.881 28 H 0.085 0.915 29 H 0.103 0.897 30 H 0.124 0.876 31 H 0.104 0.896 32 H 0.083 0.917 33 H 0.149 0.851 34 H 0.128 0.872 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 4.609 -10.738 -0.936 11.723 hybrid contribution 1.472 1.169 0.011 1.879 sum 6.080 -9.570 -0.924 11.376 Atomic orbital electron populations 1.69919 1.05969 1.27237 1.50192 1.24951 0.94840 0.99194 0.95008 0.86596 0.79562 0.82799 0.78726 1.20276 1.21185 1.20136 1.21543 0.93552 0.90728 1.51317 0.92349 1.19255 0.87277 0.82323 0.98009 1.47103 1.47572 1.35589 1.01015 1.21289 0.95584 0.95054 0.87201 1.23542 1.02280 0.94615 0.94426 1.23851 1.00041 0.94948 0.92957 1.66906 1.48130 1.06769 1.04511 1.23712 1.00388 0.90373 0.97772 1.17911 0.91103 0.90775 0.86764 1.20923 1.05437 1.03752 0.90852 1.20825 0.96193 0.95485 0.97096 1.20652 1.03682 1.01088 0.97096 1.20663 0.98358 0.98459 0.92360 1.20644 1.04439 1.01531 0.97891 0.92587 0.95202 0.94694 0.90278 0.91951 0.88122 0.91517 0.89729 0.87618 0.89569 0.91700 0.85107 0.87157 0.87719 0.87553 0.86942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.41 13.29 55.43 0.74 -24.68 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.53 -14.29 9.39 -34.44 -0.32 -14.61 16 8 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 9 C 0.25 6.13 4.91 -5.20 -0.03 6.11 16 10 N -0.61 -12.42 2.59 -173.13 -0.45 -12.87 16 11 C 0.13 2.26 5.17 -4.04 -0.02 2.24 16 12 C -0.13 -1.92 4.15 -89.69 -0.37 -2.29 16 13 C 0.01 0.16 7.40 -2.76 -0.02 0.14 16 14 N -0.64 -8.13 8.53 -117.01 -1.00 -9.13 16 15 C 0.01 0.10 8.47 -2.77 -0.02 0.08 16 16 C 0.24 4.76 6.55 -83.78 -0.55 4.21 16 17 C -0.19 -3.78 9.21 -39.38 -0.36 -4.15 16 18 C -0.08 -1.34 10.04 -39.61 -0.40 -1.74 16 19 C -0.20 -3.25 10.04 -39.54 -0.40 -3.64 16 20 C -0.08 -1.24 10.04 -39.61 -0.40 -1.64 16 21 C -0.22 -3.76 8.38 -39.38 -0.33 -4.09 16 22 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 23 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 24 H 0.04 0.91 6.20 -51.93 -0.32 0.59 16 25 H 0.08 1.40 8.07 -51.93 -0.42 0.98 16 26 H 0.06 0.96 5.98 -51.93 -0.31 0.65 16 27 H 0.10 1.74 8.14 -51.93 -0.42 1.31 16 28 H 0.07 0.83 6.03 -51.93 -0.31 0.51 16 29 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 30 H 0.31 3.29 8.91 -39.29 -0.35 2.94 16 31 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 33 H 0.13 2.91 6.15 -52.49 -0.32 2.59 16 34 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 35 H 0.10 1.40 8.06 -52.48 -0.42 0.98 16 36 H 0.11 1.36 8.06 -52.49 -0.42 0.93 16 37 H 0.11 1.70 3.94 -52.48 -0.21 1.49 16 LS Contribution 300.64 15.07 4.53 4.53 Total: -1.00 -28.26 300.64 -9.68 -37.94 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -5.17 Total: 5.86 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: -3.32 Total: -17.79 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: -0.71 Total: -46.68 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.26 -9.68 -37.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710942290.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.879 kcal (2) G-P(sol) polarization free energy of solvation -28.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds