Wall clock time and date at job start Mon Mar 30 2020 03:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99927 * 2 1 4 4 H 1.48502 * 109.47087 * 239.99690 * 3 2 1 5 5 H 1.48501 * 109.47059 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47145 * 119.99998 * 3 2 1 7 7 C 1.37874 * 119.99649 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99677 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00437 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47360 * 179.97438 * 9 7 2 11 11 C 1.46498 * 120.00184 * 270.00092 * 10 9 7 12 12 C 1.53001 * 109.47108 * 269.99848 * 11 10 9 13 13 C 1.53935 * 113.73416 * 271.72910 * 12 11 10 14 14 N 1.47964 * 86.18109 * 221.92127 * 13 12 11 15 15 C 1.47960 * 90.76241 * 24.68628 * 14 13 12 16 16 C 1.39678 * 120.00138 * 89.99664 * 10 9 7 17 17 C 1.38915 * 120.06984 * 0.02562 * 16 10 9 18 18 C 1.38104 * 119.92359 * 179.97438 * 17 16 10 19 19 C 1.38288 * 120.07208 * 359.97438 * 18 17 16 20 20 C 1.38290 * 120.15288 * 0.02562 * 19 18 17 21 21 C 1.38100 * 120.07105 * 359.97438 * 20 19 18 22 22 H 0.97006 * 120.00477 * 0.02562 * 1 2 3 23 23 H 1.08994 * 109.47223 * 60.00079 * 9 7 2 24 24 H 1.09004 * 109.47132 * 299.99732 * 9 7 2 25 25 H 1.08995 * 109.47144 * 29.99687 * 11 10 9 26 26 H 1.09000 * 109.47505 * 149.99538 * 11 10 9 27 27 H 1.09003 * 112.93774 * 43.42728 * 12 11 10 28 28 H 1.09004 * 113.75858 * 336.23413 * 13 12 11 29 29 H 1.08996 * 113.76430 * 107.60276 * 13 12 11 30 30 H 1.00897 * 111.00283 * 137.57767 * 14 13 12 31 31 H 1.08999 * 113.75932 * 220.99864 * 15 14 13 32 32 H 1.09003 * 113.85775 * 89.64261 * 15 14 13 33 33 H 1.07998 * 120.03739 * 359.69591 * 17 16 10 34 34 H 1.08001 * 119.96576 * 179.97438 * 18 17 16 35 35 H 1.08007 * 119.92458 * 180.02562 * 19 18 17 36 36 H 1.07997 * 119.96313 * 180.02562 * 20 19 18 37 37 H 1.08007 * 120.03349 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.6790 -4.1695 -1.2682 12 6 1.7483 -5.3007 -1.7098 13 6 2.1402 -6.6799 -1.1497 14 7 1.8308 -7.2054 -2.4978 15 6 2.0879 -5.8769 -3.0963 16 6 2.6568 -4.1435 1.2102 17 6 2.2061 -3.6170 2.4141 18 6 2.6565 -4.1445 3.6083 19 6 3.5547 -5.1960 3.6065 20 6 4.0054 -5.7225 2.4098 21 6 3.5591 -5.1997 1.2120 22 1 -0.4851 0.8401 -0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6240 -2.5567 0.8903 25 1 2.6867 -3.3879 -2.0278 26 1 3.6885 -4.5594 -1.1379 27 1 0.6935 -5.0572 -1.5823 28 1 3.1928 -6.7605 -0.8779 29 1 1.4697 -7.0446 -0.3716 30 1 2.5250 -7.8754 -2.7929 31 1 1.3756 -5.6000 -3.8734 32 1 3.1247 -5.7209 -3.3946 33 1 1.5078 -2.7932 2.4161 34 1 2.3068 -3.7354 4.5447 35 1 3.9050 -5.6070 4.5418 36 1 4.7065 -6.5439 2.4119 37 1 3.9118 -5.6111 0.2777 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710942290.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:36 Heat of formation + Delta-G solvation = 47.285608 kcal Electronic energy + Delta-G solvation = -17858.734059 eV Core-core repulsion = 15215.104648 eV Total energy + Delta-G solvation = -2643.629411 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.92318 -39.68423 -37.00938 -34.75099 -31.97847 -31.06785 -30.30241 -27.93155 -26.92340 -25.48878 -24.35563 -22.85175 -21.38867 -20.45454 -18.59788 -18.42754 -17.21701 -16.91834 -16.61551 -16.13596 -15.88533 -15.16820 -14.84858 -14.69844 -14.36593 -14.08577 -13.77146 -13.52126 -13.15900 -13.06657 -12.95365 -12.64723 -12.51689 -12.33542 -12.05767 -11.91954 -11.69769 -11.48322 -11.24701 -10.63785 -10.49861 -9.86625 -9.64326 -8.36210 -7.80742 -6.36940 0.71989 0.94663 1.36828 1.38578 1.46815 2.33226 2.57156 3.06808 3.16080 3.19640 3.58969 3.80895 4.13067 4.26336 4.34530 4.37059 4.40765 4.55246 4.65121 4.74209 4.79717 4.84079 4.88051 4.91036 5.02040 5.12788 5.13863 5.20316 5.28849 5.36449 5.60843 5.71428 5.78501 5.91144 6.08290 6.24860 6.39226 6.52206 6.84286 6.97426 7.35093 8.83657 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.016468 B = 0.008224 C = 0.005962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.893540 B = 3404.010106 C = 4695.275775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.012 3.988 3 Si 0.960 3.040 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.274 1.274 7 C -0.541 4.541 8 H 0.050 0.950 9 C 0.272 3.728 10 N -0.619 5.619 11 C 0.137 3.863 12 C -0.135 4.135 13 C 0.023 3.977 14 N -0.647 5.647 15 C 0.020 3.980 16 C 0.215 3.785 17 C -0.223 4.223 18 C -0.082 4.082 19 C -0.197 4.197 20 C -0.073 4.073 21 C -0.216 4.216 22 H 0.267 0.733 23 H 0.006 0.994 24 H 0.007 0.993 25 H 0.063 0.937 26 H 0.085 0.915 27 H 0.066 0.934 28 H 0.087 0.913 29 H 0.070 0.930 30 H 0.329 0.671 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.126 0.874 35 H 0.139 0.861 36 H 0.148 0.852 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.436 -12.489 -0.537 15.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.187 4.187 3 Si 0.785 3.215 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.199 1.199 7 C -0.580 4.580 8 H 0.069 0.931 9 C 0.150 3.850 10 N -0.326 5.326 11 C 0.013 3.987 12 C -0.155 4.155 13 C -0.107 4.107 14 N -0.273 5.273 15 C -0.111 4.111 16 C 0.110 3.890 17 C -0.246 4.246 18 C -0.101 4.101 19 C -0.217 4.217 20 C -0.092 4.092 21 C -0.239 4.239 22 H 0.076 0.924 23 H 0.024 0.976 24 H 0.025 0.975 25 H 0.081 0.919 26 H 0.104 0.896 27 H 0.085 0.915 28 H 0.105 0.895 29 H 0.088 0.912 30 H 0.143 0.857 31 H 0.103 0.897 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.144 0.856 35 H 0.157 0.843 36 H 0.166 0.834 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 7.343 -12.425 -0.781 14.453 hybrid contribution 0.642 1.590 0.045 1.716 sum 7.985 -10.834 -0.736 13.479 Atomic orbital electron populations 1.70038 1.07433 1.28129 1.51080 1.25778 0.95649 1.02674 0.94574 0.85575 0.78376 0.78625 0.78911 1.19289 1.20501 1.19887 1.21768 0.93205 0.92025 1.50994 0.93133 1.18678 0.87514 0.83481 0.95345 1.46922 1.47630 1.35254 1.02769 1.21405 0.96975 0.95069 0.85284 1.23414 0.99961 0.94975 0.97177 1.23760 1.00718 0.93226 0.93008 1.66837 1.49187 1.07258 1.04015 1.23705 1.01812 0.89535 0.96000 1.18191 0.92537 0.92229 0.86012 1.20845 1.06628 1.04231 0.92855 1.21062 0.96445 0.96038 0.96572 1.21079 1.02048 0.99673 0.98937 1.21161 0.97932 0.98707 0.91365 1.20893 1.03107 1.00148 0.99714 0.92449 0.97621 0.97546 0.91857 0.89649 0.91534 0.89483 0.91182 0.85693 0.89679 0.89142 0.88955 0.85647 0.84323 0.83433 0.84840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.82 13.29 21.45 0.28 -54.53 16 2 C 0.01 0.70 5.46 84.65 0.46 1.16 16 3 Si 0.96 44.13 29.54 68.60 2.03 46.16 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 6 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 7 C -0.54 -30.34 9.39 25.60 0.24 -30.10 16 8 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 9 C 0.27 14.24 4.91 85.63 0.42 14.66 16 10 N -0.62 -26.36 2.59 -701.65 -1.82 -28.18 16 11 C 0.14 4.62 5.17 86.38 0.45 5.07 16 12 C -0.13 -4.05 4.15 -10.15 -0.04 -4.09 16 13 C 0.02 0.57 7.40 86.40 0.64 1.21 16 14 N -0.65 -15.11 8.53 -524.10 -4.47 -19.58 16 15 C 0.02 0.47 8.47 86.41 0.73 1.20 16 16 C 0.21 8.59 6.55 38.21 0.25 8.84 16 17 C -0.22 -9.39 9.21 22.40 0.21 -9.19 16 18 C -0.08 -2.82 10.04 22.25 0.22 -2.59 16 19 C -0.20 -5.58 10.04 22.29 0.22 -5.36 16 20 C -0.07 -1.97 10.04 22.25 0.22 -1.75 16 21 C -0.22 -6.79 8.38 22.40 0.19 -6.60 16 22 H 0.27 14.89 8.31 -92.70 -0.77 14.12 16 23 H 0.01 0.32 8.07 -2.39 -0.02 0.30 16 24 H 0.01 0.38 6.20 -2.39 -0.01 0.36 16 25 H 0.06 2.30 8.07 -2.39 -0.02 2.28 16 26 H 0.09 2.46 5.98 -2.39 -0.01 2.44 16 27 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 28 H 0.09 1.83 6.03 -2.38 -0.01 1.82 16 29 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.33 5.89 8.91 -89.70 -0.80 5.09 16 31 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.09 1.66 8.10 -2.39 -0.02 1.65 16 33 H 0.09 4.52 6.15 -2.91 -0.02 4.50 16 34 H 0.13 3.75 8.06 -2.91 -0.02 3.72 16 35 H 0.14 3.02 8.06 -2.91 -0.02 2.99 16 36 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 37 H 0.13 3.55 3.94 -2.91 -0.01 3.53 16 Total: -1.00 -63.97 300.64 0.51 -63.46 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: 0.27 Total: 20.21 kcal Atomic # 6 Polarization: -31.75 SS G_CDS: 4.21 Total: -27.54 kcal Atomic # 7 Polarization: -96.29 SS G_CDS: -6.00 Total: -102.29 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -63.97 0.51 -63.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710942290.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.747 kcal (2) G-P(sol) polarization free energy of solvation -63.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds