Wall clock time and date at job start Mon Mar 30 2020 03:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86792 * 120.00136 * 2 1 4 4 H 1.48500 * 109.47263 * 239.99527 * 3 2 1 5 5 H 1.48504 * 109.47352 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47541 * 119.99198 * 3 2 1 7 7 C 1.37877 * 119.99619 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99630 * 174.89861 * 7 2 1 9 9 C 1.50698 * 120.00168 * 354.89766 * 7 2 1 10 10 H 1.08991 * 109.47487 * 354.82029 * 9 7 2 11 11 C 1.50709 * 109.47053 * 234.81875 * 9 7 2 12 12 C 1.38231 * 119.99559 * 100.01815 * 11 9 7 13 13 C 1.38233 * 120.00180 * 179.97438 * 12 11 9 14 14 C 1.38238 * 119.99649 * 359.96154 * 13 12 11 15 15 C 1.38234 * 120.00172 * 0.27381 * 14 13 12 16 16 C 1.38226 * 120.00302 * 280.00270 * 11 9 7 17 17 N 1.46904 * 109.46987 * 114.82595 * 9 7 2 18 18 C 1.47474 * 111.00041 * 30.87743 * 17 9 7 19 19 C 1.53510 * 87.92986 * 221.29775 * 18 17 9 20 20 C 1.53002 * 114.17102 * 139.67264 * 19 18 17 21 21 N 1.46903 * 109.47339 * 91.15664 * 20 19 18 22 22 C 1.47476 * 110.99412 * 294.90561 * 17 9 7 23 23 H 0.96998 * 119.99920 * 0.02562 * 1 2 3 24 24 H 1.08008 * 120.00435 * 359.97438 * 12 11 9 25 25 H 1.07998 * 120.00563 * 179.97438 * 13 12 11 26 26 H 1.08002 * 120.00161 * 179.97438 * 14 13 12 27 27 H 1.08001 * 120.00527 * 179.72527 * 15 14 13 28 28 H 1.08007 * 120.00024 * 359.97438 * 16 11 9 29 29 H 1.09002 * 113.47938 * 336.06417 * 18 17 9 30 30 H 1.09004 * 113.47464 * 106.53446 * 18 17 9 31 31 H 1.09000 * 114.17213 * 272.37328 * 19 18 17 32 32 H 1.08996 * 109.47768 * 211.16026 * 20 19 18 33 33 H 1.09004 * 109.46994 * 331.16295 * 20 19 18 34 34 H 1.00902 * 111.00270 * 180.02562 * 21 20 19 35 35 H 1.00900 * 111.00325 * 303.95634 * 21 20 19 36 36 H 1.09004 * 113.47608 * 253.46907 * 22 17 9 37 37 H 1.08996 * 113.48306 * 23.88454 * 22 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6963 -1.2124 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0814 -1.1960 -0.0826 9 6 1.2555 -2.4965 0.1172 10 1 0.1975 -2.2936 0.2830 11 6 1.8028 -3.2887 1.2766 12 6 1.1367 -3.2909 2.4878 13 6 1.6384 -4.0179 3.5512 14 6 2.8057 -4.7434 3.4029 15 6 3.4744 -4.7373 2.1931 16 6 2.9705 -4.0133 1.1286 17 7 1.4179 -3.2675 -1.1227 18 6 2.7225 -2.9889 -1.7512 19 6 2.0031 -2.9723 -3.1072 20 6 2.4868 -1.8769 -4.0597 21 7 3.5728 -2.4017 -4.8982 22 6 0.7846 -2.5765 -2.2613 23 1 -0.4850 0.8400 -0.0004 24 1 0.2243 -2.7245 2.6035 25 1 1.1183 -4.0193 4.4977 26 1 3.1979 -5.3111 4.2338 27 1 4.3887 -5.3005 2.0786 28 1 3.4906 -4.0122 0.1820 29 1 3.1424 -2.0230 -1.4705 30 1 3.4371 -3.8057 -1.6488 31 1 1.9194 -3.9507 -3.5801 32 1 1.6606 -1.5560 -4.6940 33 1 2.8521 -1.0281 -3.4816 34 1 3.9101 -1.6966 -5.5362 35 1 4.3242 -2.7651 -4.3313 36 1 -0.1432 -3.0438 -2.5913 37 1 0.6864 -1.5007 -2.1164 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712579118.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:24 Heat of formation + Delta-G solvation = 64.823242 kcal Electronic energy + Delta-G solvation = -18165.412299 eV Core-core repulsion = 15522.543377 eV Total energy + Delta-G solvation = -2642.868922 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.61424 -37.95663 -34.37831 -32.87938 -31.21559 -30.09087 -28.10881 -26.03901 -25.08547 -23.67812 -21.89620 -21.45539 -19.60191 -18.78159 -16.62134 -16.02895 -15.56273 -15.02546 -14.96345 -14.44889 -14.22121 -13.55875 -13.45557 -13.29608 -12.59633 -12.47187 -12.15074 -11.91907 -11.71884 -11.34127 -11.13012 -10.88933 -10.70653 -10.37901 -10.30263 -9.98628 -9.54953 -9.36941 -9.14815 -8.76926 -8.42620 -8.12364 -7.90188 -7.43625 -6.25929 -4.35987 2.21380 2.27689 3.14325 3.21163 3.24209 4.20166 4.65352 4.85988 5.02620 5.23640 5.32627 5.60102 5.66633 5.76643 5.77732 5.95672 6.11687 6.18334 6.31901 6.34309 6.41231 6.56849 6.58656 6.72953 6.82443 6.85241 6.90521 7.05264 7.18184 7.24255 7.35941 7.43552 7.57912 7.60498 7.67269 7.76051 7.91431 8.04622 8.37958 8.77854 9.29431 10.76182 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.016102 B = 0.009858 C = 0.007162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.477500 B = 2839.681138 C = 3908.528187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.078 3.922 3 Si 0.889 3.111 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.532 4.532 8 H 0.061 0.939 9 C 0.185 3.815 10 H 0.087 0.913 11 C -0.015 4.015 12 C -0.123 4.123 13 C -0.126 4.126 14 C -0.154 4.154 15 C -0.129 4.129 16 C -0.119 4.119 17 N -0.482 5.482 18 C -0.001 4.001 19 C -0.123 4.123 20 C 0.072 3.928 21 N -0.852 5.852 22 C 0.024 3.976 23 H 0.267 0.733 24 H 0.115 0.885 25 H 0.108 0.892 26 H 0.105 0.895 27 H 0.106 0.894 28 H 0.117 0.883 29 H 0.099 0.901 30 H 0.052 0.948 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.032 0.968 34 H 0.333 0.667 35 H 0.338 0.662 36 H 0.056 0.944 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.477 -3.685 -1.573 6.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.128 4.128 3 Si 0.716 3.284 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.571 4.571 8 H 0.079 0.921 9 C 0.079 3.921 10 H 0.105 0.895 11 C -0.016 4.016 12 C -0.142 4.142 13 C -0.144 4.144 14 C -0.172 4.172 15 C -0.148 4.148 16 C -0.138 4.138 17 N -0.203 5.203 18 C -0.130 4.130 19 C -0.143 4.143 20 C -0.058 4.058 21 N -0.380 5.380 22 C -0.105 4.105 23 H 0.077 0.923 24 H 0.133 0.867 25 H 0.126 0.874 26 H 0.124 0.876 27 H 0.124 0.876 28 H 0.135 0.865 29 H 0.117 0.883 30 H 0.071 0.929 31 H 0.107 0.893 32 H 0.084 0.916 33 H 0.050 0.950 34 H 0.144 0.856 35 H 0.150 0.850 36 H 0.074 0.926 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.517 -4.755 -1.609 6.129 hybrid contribution 1.269 2.589 0.587 2.943 sum 4.786 -2.166 -1.021 5.352 Atomic orbital electron populations 1.69879 1.05901 1.27450 1.48320 1.24997 0.94867 0.99273 0.93631 0.86696 0.79844 0.82927 0.78925 1.20117 1.21005 1.19923 1.21262 0.93571 0.90519 1.51726 0.92080 1.19069 0.99423 0.88583 0.85038 0.89522 1.20415 0.93172 0.92134 0.95916 1.21015 1.00465 0.99553 0.93166 1.20961 0.96720 0.98501 0.98234 1.20819 0.97002 1.02079 0.97331 1.21005 0.99498 1.00424 0.93824 1.21121 0.96711 0.97610 0.98312 1.69133 1.05118 1.43817 1.02274 1.24082 0.94653 1.01827 0.92464 1.22787 0.98952 0.98479 0.94044 1.21765 0.93807 0.95906 0.94365 1.58817 1.14725 1.41008 1.23430 1.23491 0.95304 1.00609 0.91117 0.92260 0.86728 0.87427 0.87639 0.87575 0.86467 0.88326 0.92922 0.89285 0.91620 0.94980 0.85627 0.85013 0.92564 0.89060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.14 12.44 55.43 0.69 -22.45 16 2 C 0.08 1.96 4.90 -17.82 -0.09 1.87 16 3 Si 0.89 19.93 29.54 -169.99 -5.02 14.91 16 4 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 7 C -0.53 -13.23 5.66 -34.44 -0.19 -13.42 16 8 H 0.06 1.54 6.37 -52.48 -0.33 1.20 16 9 C 0.19 4.42 2.40 -70.01 -0.17 4.25 16 10 H 0.09 2.33 6.81 -51.93 -0.35 1.97 16 11 C -0.02 -0.34 4.94 -104.62 -0.52 -0.86 16 12 C -0.12 -2.60 9.67 -39.59 -0.38 -2.99 16 13 C -0.13 -2.30 10.05 -39.58 -0.40 -2.70 16 14 C -0.15 -2.66 10.05 -39.58 -0.40 -3.06 16 15 C -0.13 -2.33 10.05 -39.58 -0.40 -2.73 16 16 C -0.12 -2.44 9.24 -39.59 -0.37 -2.81 16 17 N -0.48 -10.49 6.05 -239.42 -1.45 -11.94 16 18 C 0.00 -0.03 5.50 -7.55 -0.04 -0.07 16 19 C -0.12 -2.21 4.24 -90.09 -0.38 -2.59 16 20 C 0.07 1.17 6.70 -3.82 -0.03 1.14 16 21 N -0.85 -11.63 9.62 -10.37 -0.10 -11.73 16 22 C 0.02 0.51 7.15 -7.55 -0.05 0.46 16 23 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 24 H 0.11 2.43 8.04 -52.48 -0.42 2.00 16 25 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 26 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 27 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 28 H 0.12 2.34 5.11 -52.48 -0.27 2.07 16 29 H 0.10 2.11 4.58 -51.93 -0.24 1.87 16 30 H 0.05 0.97 6.93 -51.93 -0.36 0.61 16 31 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.03 0.56 7.81 -51.93 -0.41 0.15 16 34 H 0.33 3.85 9.08 -39.29 -0.36 3.49 16 35 H 0.34 4.36 8.99 -39.29 -0.35 4.00 16 36 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.09 2.13 6.43 -51.93 -0.33 1.80 16 LS Contribution 296.56 15.07 4.47 4.47 Total: -1.00 -26.18 296.56 -9.92 -36.10 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: -5.10 Total: 14.15 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: -3.41 Total: -23.51 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: -0.86 Total: -46.12 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -26.18 -9.92 -36.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712579118.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.922 kcal (2) G-P(sol) polarization free energy of solvation -26.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds