Wall clock time and date at job start Mon Mar 30 2020 03:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86792 * 120.00136 * 2 1 4 4 H 1.48500 * 109.47263 * 239.99527 * 3 2 1 5 5 H 1.48504 * 109.47352 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47541 * 119.99198 * 3 2 1 7 7 C 1.37877 * 119.99619 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99630 * 174.89861 * 7 2 1 9 9 C 1.50698 * 120.00168 * 354.89766 * 7 2 1 10 10 H 1.08991 * 109.47487 * 354.82029 * 9 7 2 11 11 C 1.50709 * 109.47053 * 234.81875 * 9 7 2 12 12 C 1.38231 * 119.99559 * 100.01815 * 11 9 7 13 13 C 1.38233 * 120.00180 * 179.97438 * 12 11 9 14 14 C 1.38238 * 119.99649 * 359.96154 * 13 12 11 15 15 C 1.38234 * 120.00172 * 0.27381 * 14 13 12 16 16 C 1.38226 * 120.00302 * 280.00270 * 11 9 7 17 17 N 1.46904 * 109.46987 * 114.82595 * 9 7 2 18 18 C 1.47474 * 111.00041 * 30.87743 * 17 9 7 19 19 C 1.53510 * 87.92986 * 221.29775 * 18 17 9 20 20 C 1.53002 * 114.17102 * 139.67264 * 19 18 17 21 21 N 1.46903 * 109.47339 * 91.15664 * 20 19 18 22 22 C 1.47476 * 110.99412 * 294.90561 * 17 9 7 23 23 H 0.96998 * 119.99920 * 0.02562 * 1 2 3 24 24 H 1.08008 * 120.00435 * 359.97438 * 12 11 9 25 25 H 1.07998 * 120.00563 * 179.97438 * 13 12 11 26 26 H 1.08002 * 120.00161 * 179.97438 * 14 13 12 27 27 H 1.08001 * 120.00527 * 179.72527 * 15 14 13 28 28 H 1.08007 * 120.00024 * 359.97438 * 16 11 9 29 29 H 1.09002 * 113.47938 * 336.06417 * 18 17 9 30 30 H 1.09004 * 113.47464 * 106.53446 * 18 17 9 31 31 H 1.09000 * 114.17213 * 272.37328 * 19 18 17 32 32 H 1.08996 * 109.47768 * 211.16026 * 20 19 18 33 33 H 1.09004 * 109.46994 * 331.16295 * 20 19 18 34 34 H 1.00902 * 111.00270 * 180.02562 * 21 20 19 35 35 H 1.00900 * 111.00325 * 303.95634 * 21 20 19 36 36 H 1.09004 * 113.47608 * 253.46907 * 22 17 9 37 37 H 1.08996 * 113.48306 * 23.88454 * 22 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6963 -1.2124 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0814 -1.1960 -0.0826 9 6 1.2555 -2.4965 0.1172 10 1 0.1975 -2.2936 0.2830 11 6 1.8028 -3.2887 1.2766 12 6 1.1367 -3.2909 2.4878 13 6 1.6384 -4.0179 3.5512 14 6 2.8057 -4.7434 3.4029 15 6 3.4744 -4.7373 2.1931 16 6 2.9705 -4.0133 1.1286 17 7 1.4179 -3.2675 -1.1227 18 6 2.7225 -2.9889 -1.7512 19 6 2.0031 -2.9723 -3.1072 20 6 2.4868 -1.8769 -4.0597 21 7 3.5728 -2.4017 -4.8982 22 6 0.7846 -2.5765 -2.2613 23 1 -0.4850 0.8400 -0.0004 24 1 0.2243 -2.7245 2.6035 25 1 1.1183 -4.0193 4.4977 26 1 3.1979 -5.3111 4.2338 27 1 4.3887 -5.3005 2.0786 28 1 3.4906 -4.0122 0.1820 29 1 3.1424 -2.0230 -1.4705 30 1 3.4371 -3.8057 -1.6488 31 1 1.9194 -3.9507 -3.5801 32 1 1.6606 -1.5560 -4.6940 33 1 2.8521 -1.0281 -3.4816 34 1 3.9101 -1.6966 -5.5362 35 1 4.3242 -2.7651 -4.3313 36 1 -0.1432 -3.0438 -2.5913 37 1 0.6864 -1.5007 -2.1164 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712579118.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:23 Heat of formation + Delta-G solvation = 46.804218 kcal Electronic energy + Delta-G solvation = -18166.193663 eV Core-core repulsion = 15522.543377 eV Total energy + Delta-G solvation = -2643.650285 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.26896 -39.46760 -35.85918 -34.56436 -32.85689 -31.58835 -29.65661 -27.78998 -26.73070 -25.33239 -23.38352 -22.96407 -21.24661 -20.41701 -18.42295 -17.59391 -17.06772 -16.56578 -16.49704 -16.03060 -15.77035 -15.11161 -14.94047 -14.85452 -14.16699 -13.96277 -13.85416 -13.47742 -13.35144 -12.99240 -12.88823 -12.52656 -12.31439 -12.00800 -11.86494 -11.71737 -11.17192 -11.10329 -10.88231 -10.67526 -9.63194 -9.59667 -9.49844 -9.17240 -8.17943 -6.34036 0.69870 0.76527 1.34068 1.37247 1.42995 2.33093 2.98676 3.22579 3.53858 3.67290 3.83184 4.19981 4.28049 4.32869 4.38053 4.49967 4.56217 4.72535 4.81352 4.84549 4.93431 4.94793 5.01586 5.12651 5.17137 5.17731 5.33130 5.48594 5.52326 5.67641 5.74311 5.76555 5.92974 5.99313 6.23831 6.25665 6.38623 6.55619 6.66795 6.85976 7.33103 8.82470 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.016102 B = 0.009858 C = 0.007162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.477500 B = 2839.681138 C = 3908.528187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.035 3.965 3 Si 0.942 3.058 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.530 4.530 8 H 0.056 0.944 9 C 0.194 3.806 10 H 0.044 0.956 11 C -0.048 4.048 12 C -0.149 4.149 13 C -0.123 4.123 14 C -0.145 4.145 15 C -0.125 4.125 16 C -0.133 4.133 17 N -0.489 5.489 18 C 0.006 3.994 19 C -0.099 4.099 20 C 0.081 3.919 21 N -0.846 5.846 22 C 0.018 3.982 23 H 0.265 0.735 24 H 0.096 0.904 25 H 0.137 0.863 26 H 0.147 0.853 27 H 0.141 0.859 28 H 0.117 0.883 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.098 0.902 32 H 0.069 0.931 33 H 0.016 0.984 34 H 0.348 0.652 35 H 0.345 0.655 36 H 0.056 0.944 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.635 -4.920 -1.298 8.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.167 4.167 3 Si 0.768 3.232 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.202 1.202 7 C -0.568 4.568 8 H 0.074 0.926 9 C 0.087 3.913 10 H 0.062 0.938 11 C -0.049 4.049 12 C -0.168 4.168 13 C -0.141 4.141 14 C -0.163 4.163 15 C -0.143 4.143 16 C -0.151 4.151 17 N -0.210 5.210 18 C -0.123 4.123 19 C -0.118 4.118 20 C -0.050 4.050 21 N -0.376 5.376 22 C -0.112 4.112 23 H 0.074 0.926 24 H 0.114 0.886 25 H 0.155 0.845 26 H 0.165 0.835 27 H 0.159 0.841 28 H 0.135 0.865 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.117 0.883 32 H 0.088 0.912 33 H 0.034 0.966 34 H 0.161 0.839 35 H 0.157 0.843 36 H 0.074 0.926 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.696 -5.993 -1.347 8.377 hybrid contribution 0.608 2.862 0.546 2.976 sum 6.304 -3.131 -0.802 7.084 Atomic orbital electron populations 1.70006 1.07105 1.27735 1.49889 1.25605 0.95425 1.01928 0.93693 0.85848 0.78707 0.79709 0.78919 1.19151 1.20995 1.20157 1.21376 0.93215 0.91295 1.50950 0.92564 1.18789 0.96808 0.89051 0.86678 0.93816 1.20401 0.94815 0.93920 0.95776 1.21063 1.00511 1.01039 0.94210 1.21289 0.97202 0.97311 0.98327 1.21304 0.95851 1.00925 0.98205 1.21408 1.00408 0.99360 0.93144 1.21194 0.96223 0.98206 0.99469 1.69108 1.06667 1.43410 1.01861 1.23954 0.93943 1.01305 0.93049 1.22641 0.96257 0.99338 0.93588 1.21568 0.94796 0.94566 0.94120 1.58749 1.14523 1.41295 1.23059 1.23434 0.96766 0.98852 0.92098 0.92559 0.88583 0.84542 0.83509 0.84082 0.86511 0.90141 0.91358 0.88337 0.91237 0.96591 0.83928 0.84259 0.92565 0.91874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.21 12.44 21.45 0.27 -49.94 16 2 C 0.04 1.85 4.90 84.65 0.41 2.26 16 3 Si 0.94 41.69 29.54 68.60 2.03 43.72 16 4 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 6 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 7 C -0.53 -27.21 5.66 25.60 0.14 -27.07 16 8 H 0.06 2.90 6.37 -2.91 -0.02 2.88 16 9 C 0.19 9.65 2.40 43.42 0.10 9.75 16 10 H 0.04 2.52 6.81 -2.39 -0.02 2.50 16 11 C -0.05 -2.20 4.94 -19.87 -0.10 -2.30 16 12 C -0.15 -6.43 9.67 22.27 0.22 -6.22 16 13 C -0.12 -4.26 10.05 22.27 0.22 -4.04 16 14 C -0.15 -4.45 10.05 22.27 0.22 -4.23 16 15 C -0.13 -4.11 10.05 22.27 0.22 -3.89 16 16 C -0.13 -5.30 9.24 22.27 0.21 -5.10 16 17 N -0.49 -21.83 6.05 -911.38 -5.51 -27.35 16 18 C 0.01 0.24 5.50 83.57 0.46 0.70 16 19 C -0.10 -3.49 4.24 -10.45 -0.04 -3.53 16 20 C 0.08 2.52 6.70 86.30 0.58 3.10 16 21 N -0.85 -21.23 9.62 -186.71 -1.80 -23.02 16 22 C 0.02 0.79 7.15 83.57 0.60 1.39 16 23 H 0.27 14.06 8.31 -92.71 -0.77 13.28 16 24 H 0.10 4.34 8.04 -2.91 -0.02 4.32 16 25 H 0.14 3.83 8.06 -2.91 -0.02 3.81 16 26 H 0.15 3.34 8.06 -2.91 -0.02 3.31 16 27 H 0.14 3.62 8.06 -2.91 -0.02 3.59 16 28 H 0.12 4.55 5.11 -2.91 -0.01 4.54 16 29 H 0.08 3.47 4.58 -2.39 -0.01 3.46 16 30 H 0.07 2.43 6.93 -2.38 -0.02 2.41 16 31 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 32 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.02 0.55 7.81 -2.39 -0.02 0.53 16 34 H 0.35 7.20 9.08 -89.69 -0.81 6.38 16 35 H 0.34 8.05 8.99 -89.69 -0.81 7.25 16 36 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 37 H 0.06 3.10 6.43 -2.39 -0.02 3.08 16 Total: -1.00 -58.22 296.56 -2.30 -60.52 By element: Atomic # 1 Polarization: 35.77 SS G_CDS: -0.53 Total: 35.23 kcal Atomic # 6 Polarization: -42.40 SS G_CDS: 3.25 Total: -39.15 kcal Atomic # 7 Polarization: -93.27 SS G_CDS: -7.04 Total: -100.31 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -58.22 -2.30 -60.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712579118.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.321 kcal (2) G-P(sol) polarization free energy of solvation -58.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds