Wall clock time and date at job start Mon Mar 30 2020 03:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48493 * 109.47470 * 240.00041 * 3 2 1 5 5 H 1.48499 * 109.47263 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47057 * 119.99835 * 3 2 1 7 7 C 1.38806 * 119.99833 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99681 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00545 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00396 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46998 * 180.02562 * 10 9 7 12 12 C 1.53928 * 113.73187 * 271.72538 * 11 10 9 13 13 N 1.47964 * 86.18199 * 221.92240 * 12 11 10 14 14 C 1.46901 * 110.99973 * 137.58309 * 13 12 11 15 15 C 1.50694 * 109.47107 * 70.64249 * 14 13 12 16 16 C 1.38235 * 120.00023 * 269.72687 * 15 14 13 17 17 C 1.38240 * 120.00074 * 179.78645 * 16 15 14 18 18 C 1.38240 * 119.99666 * 0.44523 * 17 16 15 19 19 C 1.38231 * 119.99921 * 359.80524 * 18 17 16 20 20 C 1.38224 * 120.00329 * 359.97438 * 19 18 17 21 21 C 1.47963 * 90.75975 * 24.69386 * 13 12 11 22 22 H 0.97001 * 119.99731 * 359.97438 * 1 2 3 23 23 H 0.97010 * 119.99695 * 0.02562 * 9 7 2 24 24 H 1.08993 * 109.47452 * 60.00465 * 10 9 7 25 25 H 1.09000 * 109.47175 * 300.00255 * 10 9 7 26 26 H 1.09002 * 112.93652 * 43.43541 * 11 10 9 27 27 H 1.08995 * 113.76247 * 336.24189 * 12 11 10 28 28 H 1.08998 * 113.76115 * 107.60640 * 12 11 10 29 29 H 1.08994 * 109.47203 * 190.64320 * 14 13 12 30 30 H 1.09001 * 109.47039 * 310.64247 * 14 13 12 31 31 H 1.08004 * 120.00220 * 359.97438 * 16 15 14 32 32 H 1.08003 * 120.00195 * 180.26792 * 17 16 15 33 33 H 1.07999 * 119.99572 * 179.83715 * 18 17 16 34 34 H 1.08006 * 119.99791 * 180.02562 * 19 18 17 35 35 H 1.08003 * 120.00147 * 179.97438 * 20 19 18 36 36 H 1.09005 * 113.75683 * 220.99291 * 21 13 12 37 37 H 1.08988 * 113.86277 * 89.64238 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 6 0.6285 -5.2633 1.4070 13 7 0.7625 -6.6485 0.9044 14 6 1.4141 -7.5092 1.9007 15 6 0.4740 -7.7418 3.0553 16 6 0.4840 -6.8830 4.1384 17 6 -0.3814 -7.0938 5.1956 18 6 -1.2504 -8.1687 5.1737 19 6 -1.2567 -9.0304 4.0929 20 6 -0.3945 -8.8171 3.0338 21 6 1.7284 -6.2028 -0.1240 22 1 -0.4850 0.8401 0.0004 23 1 0.3555 -2.3880 -0.0005 24 1 2.6847 -3.7146 0.8894 25 1 2.6848 -3.7145 -0.8905 26 1 0.2340 -4.6687 -0.6916 27 1 1.3441 -5.0085 2.1886 28 1 -0.3948 -4.9845 1.6585 29 1 1.6708 -8.4646 1.4431 30 1 2.3208 -7.0243 2.2624 31 1 1.1658 -6.0456 4.1574 32 1 -0.3767 -6.4203 6.0399 33 1 -1.9247 -8.3349 6.0008 34 1 -1.9359 -9.8700 4.0756 35 1 -0.3992 -9.4906 2.1895 36 1 1.5839 -6.6747 -1.0960 37 1 2.7663 -6.2224 0.2079 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716201035.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:44 Heat of formation + Delta-G solvation = 49.449584 kcal Electronic energy + Delta-G solvation = -17025.021203 eV Core-core repulsion = 14381.485629 eV Total energy + Delta-G solvation = -2643.535574 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.24749 -39.68487 -36.48286 -34.06277 -32.80220 -31.76596 -30.06499 -27.47177 -27.00832 -25.14122 -23.44765 -23.35095 -21.72412 -20.67197 -19.07431 -17.67258 -17.04870 -16.72523 -16.38183 -16.28676 -15.89476 -15.35449 -14.95019 -14.76131 -14.41275 -14.26118 -13.70898 -13.49831 -13.41998 -13.18072 -12.84691 -12.75880 -12.29425 -12.07415 -11.96972 -11.87815 -11.76285 -11.50804 -11.43511 -10.91446 -9.88112 -9.78843 -9.56256 -9.00134 -7.94897 -5.24422 0.44052 0.52368 1.47155 1.50555 1.56805 2.56002 2.78336 3.14192 3.36927 3.50395 3.75666 3.83376 3.94761 4.15812 4.19533 4.28739 4.36740 4.43348 4.46883 4.59069 4.63607 4.65412 4.73665 4.77556 4.84842 4.93860 5.10419 5.12583 5.17281 5.30439 5.39297 5.49377 5.59914 5.63608 5.72816 6.07205 6.15059 6.27018 7.33004 8.09165 8.32588 9.28544 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.031807 B = 0.004234 C = 0.003918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.084565 B = 6612.170443 C = 7144.437364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.075 4.075 3 Si 0.975 3.025 4 H -0.277 1.277 5 H -0.295 1.295 6 H -0.277 1.277 7 C -0.250 4.250 8 H 0.076 0.924 9 N -0.745 5.745 10 C 0.163 3.837 11 C -0.119 4.119 12 C 0.022 3.978 13 N -0.479 5.479 14 C 0.059 3.941 15 C -0.090 4.090 16 C -0.130 4.130 17 C -0.132 4.132 18 C -0.129 4.129 19 C -0.128 4.128 20 C -0.113 4.113 21 C 0.022 3.978 22 H 0.252 0.748 23 H 0.373 0.627 24 H 0.020 0.980 25 H 0.024 0.976 26 H 0.085 0.915 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.098 0.902 30 H 0.051 0.949 31 H 0.114 0.886 32 H 0.133 0.867 33 H 0.142 0.858 34 H 0.144 0.856 35 H 0.133 0.867 36 H 0.103 0.897 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.209 -19.796 7.543 21.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.267 4.267 3 Si 0.804 3.196 4 H -0.203 1.203 5 H -0.221 1.221 6 H -0.203 1.203 7 C -0.382 4.382 8 H 0.094 0.906 9 N -0.388 5.388 10 C 0.036 3.964 11 C -0.139 4.139 12 C -0.107 4.107 13 N -0.201 5.201 14 C -0.068 4.068 15 C -0.090 4.090 16 C -0.148 4.148 17 C -0.150 4.150 18 C -0.147 4.147 19 C -0.146 4.146 20 C -0.131 4.131 21 C -0.107 4.107 22 H 0.060 0.940 23 H 0.205 0.795 24 H 0.038 0.962 25 H 0.042 0.958 26 H 0.103 0.897 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.117 0.883 30 H 0.069 0.931 31 H 0.133 0.867 32 H 0.151 0.849 33 H 0.160 0.840 34 H 0.161 0.839 35 H 0.151 0.849 36 H 0.121 0.879 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.808 -20.099 7.355 21.418 hybrid contribution 0.625 1.633 0.327 1.779 sum 1.433 -18.466 7.682 20.052 Atomic orbital electron populations 1.69824 1.06700 1.26201 1.59335 1.25591 0.96389 1.01183 1.03518 0.85192 0.77205 0.78996 0.78252 1.20267 1.22074 1.20320 1.19629 0.91534 0.85452 1.41585 0.90636 1.42571 1.05621 1.01197 1.89391 1.20800 0.93514 0.84469 0.97605 1.23062 0.98840 0.94272 0.97698 1.23802 1.01236 0.89425 0.96262 1.68618 1.35125 1.07433 1.08914 1.21632 0.94214 0.99605 0.91370 1.19854 0.98236 0.95937 0.95014 1.21245 1.00032 0.99046 0.94492 1.21399 0.96236 0.98548 0.98852 1.21470 0.99037 0.94879 0.99282 1.21468 0.99097 1.00231 0.93755 1.21251 0.95442 0.97512 0.98924 1.23951 0.95742 0.92846 0.98130 0.93963 0.79495 0.96182 0.95794 0.89702 0.91381 0.91435 0.88339 0.93095 0.86746 0.84918 0.84027 0.83861 0.84920 0.87882 0.89792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.42 13.06 21.65 0.28 -60.14 16 2 C -0.07 -4.35 5.50 84.86 0.47 -3.88 16 3 Si 0.98 46.51 29.55 68.60 2.03 48.54 16 4 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 5 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 6 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 7 C -0.25 -14.26 9.99 84.03 0.84 -13.43 16 8 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 9 N -0.75 -38.93 5.60 -343.46 -1.92 -40.85 16 10 C 0.16 6.57 6.11 86.38 0.53 7.10 16 11 C -0.12 -3.96 3.94 -10.15 -0.04 -4.00 16 12 C 0.02 0.68 6.51 86.40 0.56 1.24 16 13 N -0.48 -12.82 6.25 -912.41 -5.71 -18.52 16 14 C 0.06 1.34 4.97 85.55 0.43 1.77 16 15 C -0.09 -2.13 5.12 -19.87 -0.10 -2.24 16 16 C -0.13 -3.15 8.98 22.27 0.20 -2.95 16 17 C -0.13 -2.87 10.05 22.27 0.22 -2.64 16 18 C -0.13 -2.45 10.05 22.27 0.22 -2.23 16 19 C -0.13 -2.40 10.05 22.26 0.22 -2.18 16 20 C -0.11 -2.39 9.70 22.27 0.22 -2.17 16 21 C 0.02 0.55 7.54 86.41 0.65 1.21 16 22 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 23 H 0.37 20.85 7.67 -92.70 -0.71 20.14 16 24 H 0.02 0.81 7.84 -2.39 -0.02 0.79 16 25 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 27 H 0.07 2.14 6.87 -2.39 -0.02 2.12 16 28 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.10 1.87 8.09 -2.39 -0.02 1.85 16 30 H 0.05 1.13 7.63 -2.39 -0.02 1.11 16 31 H 0.11 2.78 7.46 -2.91 -0.02 2.76 16 32 H 0.13 2.41 8.06 -2.91 -0.02 2.39 16 33 H 0.14 1.96 8.06 -2.91 -0.02 1.93 16 34 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 35 H 0.13 2.39 8.06 -2.91 -0.02 2.37 16 36 H 0.10 2.29 8.14 -2.38 -0.02 2.27 16 37 H 0.08 1.88 7.75 -2.39 -0.02 1.86 16 Total: -1.00 -65.85 308.54 -0.57 -66.42 By element: Atomic # 1 Polarization: 28.62 SS G_CDS: 0.33 Total: 28.95 kcal Atomic # 6 Polarization: -28.82 SS G_CDS: 4.42 Total: -24.40 kcal Atomic # 7 Polarization: -112.16 SS G_CDS: -7.35 Total: -119.51 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -65.85 -0.57 -66.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716201035.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.869 kcal (2) G-P(sol) polarization free energy of solvation -65.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds