Wall clock time and date at job start Mon Mar 30 2020 03:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99377 * 2 1 4 4 H 1.48501 * 109.47227 * 269.99704 * 3 2 1 5 5 H 1.48496 * 109.47434 * 30.00136 * 3 2 1 6 6 H 1.48507 * 109.46769 * 150.00238 * 3 2 1 7 7 C 1.38805 * 120.00455 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00292 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99849 * 359.97438 * 7 2 1 10 10 C 1.46506 * 120.00073 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47237 * 179.72302 * 10 9 7 12 12 H 1.09006 * 112.95699 * 72.85824 * 11 10 9 13 13 C 1.53929 * 113.76002 * 204.50393 * 11 10 9 14 14 C 1.53925 * 86.34314 * 138.04076 * 13 11 10 15 15 N 1.47957 * 113.75963 * 301.06339 * 11 10 9 16 16 C 1.46900 * 110.99746 * 108.09890 * 15 11 10 17 17 C 1.50701 * 109.47030 * 169.99836 * 16 15 11 18 18 C 1.38232 * 120.00221 * 269.72827 * 17 16 15 19 19 C 1.38242 * 120.00243 * 179.76521 * 18 17 16 20 20 C 1.38242 * 119.99357 * 0.48592 * 19 18 17 21 21 C 1.38232 * 120.00239 * 359.78702 * 20 19 18 22 22 C 1.38232 * 120.00251 * 359.96206 * 21 20 19 23 23 H 0.97000 * 120.00679 * 359.97438 * 1 2 3 24 24 H 0.97005 * 120.00057 * 359.72558 * 9 7 2 25 25 H 1.09001 * 109.46512 * 299.72672 * 10 9 7 26 26 H 1.08998 * 109.47174 * 59.71793 * 10 9 7 27 27 H 1.09006 * 113.73396 * 252.39886 * 13 11 10 28 28 H 1.09000 * 113.73715 * 23.67664 * 13 11 10 29 29 H 1.09002 * 113.76657 * 90.59643 * 14 13 11 30 30 H 1.09003 * 113.76262 * 221.85640 * 14 13 11 31 31 H 1.08998 * 109.47715 * 289.99769 * 16 15 11 32 32 H 1.09003 * 109.47448 * 49.99897 * 16 15 11 33 33 H 1.08000 * 120.00108 * 359.97438 * 18 17 16 34 34 H 1.07997 * 120.00012 * 180.24768 * 19 18 17 35 35 H 1.07997 * 119.99295 * 179.76414 * 20 19 18 36 36 H 1.07993 * 119.99857 * 179.97438 * 21 20 19 37 37 H 1.08000 * 120.00134 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0005 11 6 1.0641 -4.8197 0.0064 12 1 0.5590 -4.9530 -0.9503 13 6 1.6380 -6.1227 0.5915 14 6 0.2831 -6.2836 1.3040 15 7 0.1505 -4.8160 1.1702 16 6 -1.2128 -4.4450 0.7680 17 6 -2.1587 -4.6877 1.9159 18 6 -2.7851 -5.9128 2.0482 19 6 -3.6491 -6.1370 3.1038 20 6 -3.8942 -5.1326 4.0215 21 6 -3.2722 -3.9056 3.8860 22 6 -2.4043 -3.6831 2.8333 23 1 -0.4851 0.8400 0.0004 24 1 0.3557 -2.3881 0.0039 25 1 2.6812 -3.7165 -0.8930 26 1 2.6887 -3.7123 0.8869 27 1 1.8341 -6.8907 -0.1568 28 1 2.4755 -5.9668 1.2715 29 1 -0.4522 -6.8453 0.7278 30 1 0.3671 -6.6264 2.3353 31 1 -1.2366 -3.3902 0.4944 32 1 -1.5165 -5.0491 -0.0870 33 1 -2.5970 -6.6960 1.3287 34 1 -4.1354 -7.0955 3.2094 35 1 -4.5721 -5.3065 4.8440 36 1 -3.4641 -3.1209 4.6026 37 1 -1.9186 -2.7244 2.7272 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716211334.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:45 Heat of formation + Delta-G solvation = 71.903192 kcal Electronic energy + Delta-G solvation = -17575.988921 eV Core-core repulsion = 14933.427009 eV Total energy + Delta-G solvation = -2642.561912 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.99804 -38.54266 -34.26948 -32.60254 -30.97469 -30.67704 -28.61956 -27.16164 -24.15774 -23.66363 -22.39102 -21.66710 -20.76714 -19.22112 -17.08068 -16.63090 -15.80056 -15.19504 -15.11023 -14.71081 -14.33247 -13.88526 -13.27856 -13.14648 -12.96965 -12.78216 -12.56582 -12.34217 -11.76279 -11.36032 -11.18259 -11.04171 -10.93555 -10.76144 -10.64485 -10.33688 -10.24221 -9.86906 -9.59453 -8.79976 -8.72142 -8.58287 -8.29604 -6.80986 -5.69076 -2.95602 1.53449 1.61672 3.48202 3.53254 3.55061 3.91475 4.34522 4.65318 4.78507 5.00525 5.02471 5.06124 5.15386 5.28358 5.49334 5.58892 5.61989 5.66638 5.70437 5.82417 5.87126 5.92493 5.98115 6.01826 6.22515 6.26598 6.41033 6.44361 6.57299 6.64281 6.72463 6.83314 6.87201 7.00160 7.21532 7.48649 7.76877 8.50781 9.61884 10.21761 10.57161 11.54274 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.021142 B = 0.006363 C = 0.005092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.075800 B = 4399.487411 C = 5497.108091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 0.906 3.094 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.233 4.233 8 H 0.069 0.931 9 N -0.726 5.726 10 C 0.171 3.829 11 C 0.028 3.972 12 H 0.074 0.926 13 C -0.139 4.139 14 C -0.002 4.002 15 N -0.452 5.452 16 C 0.056 3.944 17 C -0.067 4.067 18 C -0.118 4.118 19 C -0.128 4.128 20 C -0.128 4.128 21 C -0.122 4.122 22 C -0.091 4.091 23 H 0.253 0.747 24 H 0.383 0.617 25 H 0.021 0.979 26 H 0.025 0.975 27 H 0.067 0.933 28 H 0.090 0.910 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.041 0.959 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.119 0.881 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.282 -14.399 4.224 15.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.219 1.219 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.365 4.365 8 H 0.087 0.913 9 N -0.371 5.371 10 C 0.043 3.957 11 C -0.082 4.082 12 H 0.092 0.908 13 C -0.178 4.178 14 C -0.131 4.131 15 N -0.174 5.174 16 C -0.071 4.071 17 C -0.067 4.067 18 C -0.137 4.137 19 C -0.146 4.146 20 C -0.146 4.146 21 C -0.140 4.140 22 C -0.110 4.110 23 H 0.063 0.937 24 H 0.218 0.782 25 H 0.039 0.961 26 H 0.043 0.957 27 H 0.085 0.915 28 H 0.109 0.891 29 H 0.080 0.920 30 H 0.100 0.900 31 H 0.118 0.882 32 H 0.060 0.940 33 H 0.132 0.868 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.137 0.863 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.020 -13.830 4.770 15.467 hybrid contribution -0.247 0.499 -0.665 0.868 sum -5.267 -13.331 4.105 14.910 Atomic orbital electron populations 1.69649 1.05040 1.25426 1.58312 1.24693 0.95513 0.97514 1.03401 0.86202 0.78662 0.84022 0.77401 1.21882 1.21868 1.20849 1.19252 0.91006 0.84278 1.41936 0.91307 1.42259 1.05882 0.99726 1.89221 1.20561 0.92504 0.84841 0.97780 1.23724 0.95212 0.96072 0.93151 0.90812 1.23372 0.97788 0.96876 0.99748 1.23847 0.96607 0.91452 1.01158 1.68670 1.05375 1.12319 1.31050 1.21686 0.88839 1.03354 0.93256 1.19784 0.96568 0.93649 0.96690 1.21014 0.97673 0.96558 0.98406 1.21014 0.99204 0.98916 0.95452 1.21075 1.00438 0.93845 0.99281 1.21167 0.97412 0.97139 0.98313 1.21264 0.96541 0.99678 0.93511 0.93682 0.78231 0.96142 0.95692 0.91481 0.89098 0.92029 0.89961 0.88241 0.94050 0.86811 0.86635 0.86638 0.86263 0.85101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.51 13.06 55.49 0.72 -27.78 16 2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 3 Si 0.91 22.84 29.55 -169.99 -5.02 17.81 16 4 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 6 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.23 -6.70 9.99 -15.06 -0.15 -6.85 16 8 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 9 N -0.73 -18.93 5.55 -59.91 -0.33 -19.27 16 10 C 0.17 3.60 6.39 -4.04 -0.03 3.57 16 11 C 0.03 0.47 3.40 -66.66 -0.23 0.24 16 12 H 0.07 1.22 7.80 -51.93 -0.40 0.82 16 13 C -0.14 -1.88 7.84 -25.81 -0.20 -2.08 16 14 C 0.00 -0.02 6.95 -2.77 -0.02 -0.04 16 15 N -0.45 -7.76 5.94 -232.18 -1.38 -9.14 16 16 C 0.06 0.96 4.78 -4.98 -0.02 0.93 16 17 C -0.07 -1.05 5.12 -104.62 -0.54 -1.58 16 18 C -0.12 -1.58 8.98 -39.58 -0.36 -1.94 16 19 C -0.13 -1.56 10.05 -39.58 -0.40 -1.96 16 20 C -0.13 -1.59 10.05 -39.58 -0.40 -1.99 16 21 C -0.12 -1.71 10.05 -39.59 -0.40 -2.11 16 22 C -0.09 -1.50 9.70 -39.58 -0.38 -1.88 16 23 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 24 H 0.38 10.34 5.78 -40.82 -0.24 10.10 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.03 0.55 7.91 -51.93 -0.41 0.13 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.09 1.24 7.94 -51.93 -0.41 0.82 16 29 H 0.06 0.74 7.12 -51.93 -0.37 0.38 16 30 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.10 2.01 6.50 -51.93 -0.34 1.67 16 32 H 0.04 0.63 7.63 -51.93 -0.40 0.24 16 33 H 0.11 1.32 7.46 -52.49 -0.39 0.93 16 34 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 36 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 37 H 0.13 2.37 8.06 -52.49 -0.42 1.95 16 LS Contribution 305.15 15.07 4.60 4.60 Total: -1.00 -31.25 305.15 -10.09 -41.34 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -5.46 Total: 8.67 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: -3.21 Total: -16.23 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: -0.99 Total: -56.18 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.25 -10.09 -41.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716211334.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.245 kcal (2) G-P(sol) polarization free energy of solvation -31.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds