Wall clock time and date at job start Mon Mar 30 2020 03:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99377 * 2 1 4 4 H 1.48501 * 109.47227 * 269.99704 * 3 2 1 5 5 H 1.48496 * 109.47434 * 30.00136 * 3 2 1 6 6 H 1.48507 * 109.46769 * 150.00238 * 3 2 1 7 7 C 1.38805 * 120.00455 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00292 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99849 * 359.97438 * 7 2 1 10 10 C 1.46506 * 120.00073 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47237 * 179.72302 * 10 9 7 12 12 H 1.09006 * 112.95699 * 72.85824 * 11 10 9 13 13 C 1.53929 * 113.76002 * 204.50393 * 11 10 9 14 14 C 1.53925 * 86.34314 * 138.04076 * 13 11 10 15 15 N 1.47957 * 113.75963 * 301.06339 * 11 10 9 16 16 C 1.46900 * 110.99746 * 108.09890 * 15 11 10 17 17 C 1.50701 * 109.47030 * 169.99836 * 16 15 11 18 18 C 1.38232 * 120.00221 * 269.72827 * 17 16 15 19 19 C 1.38242 * 120.00243 * 179.76521 * 18 17 16 20 20 C 1.38242 * 119.99357 * 0.48592 * 19 18 17 21 21 C 1.38232 * 120.00239 * 359.78702 * 20 19 18 22 22 C 1.38232 * 120.00251 * 359.96206 * 21 20 19 23 23 H 0.97000 * 120.00679 * 359.97438 * 1 2 3 24 24 H 0.97005 * 120.00057 * 359.72558 * 9 7 2 25 25 H 1.09001 * 109.46512 * 299.72672 * 10 9 7 26 26 H 1.08998 * 109.47174 * 59.71793 * 10 9 7 27 27 H 1.09006 * 113.73396 * 252.39886 * 13 11 10 28 28 H 1.09000 * 113.73715 * 23.67664 * 13 11 10 29 29 H 1.09002 * 113.76657 * 90.59643 * 14 13 11 30 30 H 1.09003 * 113.76262 * 221.85640 * 14 13 11 31 31 H 1.08998 * 109.47715 * 289.99769 * 16 15 11 32 32 H 1.09003 * 109.47448 * 49.99897 * 16 15 11 33 33 H 1.08000 * 120.00108 * 359.97438 * 18 17 16 34 34 H 1.07997 * 120.00012 * 180.24768 * 19 18 17 35 35 H 1.07997 * 119.99295 * 179.76414 * 20 19 18 36 36 H 1.07993 * 119.99857 * 179.97438 * 21 20 19 37 37 H 1.08000 * 120.00134 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0005 11 6 1.0641 -4.8197 0.0064 12 1 0.5590 -4.9530 -0.9503 13 6 1.6380 -6.1227 0.5915 14 6 0.2831 -6.2836 1.3040 15 7 0.1505 -4.8160 1.1702 16 6 -1.2128 -4.4450 0.7680 17 6 -2.1587 -4.6877 1.9159 18 6 -2.7851 -5.9128 2.0482 19 6 -3.6491 -6.1370 3.1038 20 6 -3.8942 -5.1326 4.0215 21 6 -3.2722 -3.9056 3.8860 22 6 -2.4043 -3.6831 2.8333 23 1 -0.4851 0.8400 0.0004 24 1 0.3557 -2.3881 0.0039 25 1 2.6812 -3.7165 -0.8930 26 1 2.6887 -3.7123 0.8869 27 1 1.8341 -6.8907 -0.1568 28 1 2.4755 -5.9668 1.2715 29 1 -0.4522 -6.8453 0.7278 30 1 0.3671 -6.6264 2.3353 31 1 -1.2366 -3.3902 0.4944 32 1 -1.5165 -5.0491 -0.0870 33 1 -2.5970 -6.6960 1.3287 34 1 -4.1354 -7.0955 3.2094 35 1 -4.5721 -5.3065 4.8440 36 1 -3.4641 -3.1209 4.6026 37 1 -1.9186 -2.7244 2.7272 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716211334.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:45 Heat of formation + Delta-G solvation = 51.116551 kcal Electronic energy + Delta-G solvation = -17576.890297 eV Core-core repulsion = 14933.427009 eV Total energy + Delta-G solvation = -2643.463289 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.22685 -39.65463 -36.26720 -33.85015 -32.96129 -31.75148 -29.81285 -28.86083 -25.54108 -25.33496 -23.60549 -23.17021 -21.92277 -20.52449 -19.15669 -17.70372 -17.02131 -16.75977 -16.47496 -16.16127 -15.76671 -15.33024 -14.88893 -14.69661 -14.29994 -14.21531 -13.79247 -13.50893 -13.21820 -13.01386 -12.78808 -12.65256 -12.31075 -12.15026 -12.13993 -11.94035 -11.67691 -11.46420 -11.37928 -10.92320 -9.79931 -9.72987 -9.49843 -8.95421 -7.93262 -5.20832 0.46113 0.53392 1.45308 1.47806 1.56195 2.55787 2.79977 3.15525 3.40008 3.57972 3.81134 3.86048 3.94979 4.17339 4.22076 4.31259 4.34144 4.42055 4.49101 4.57329 4.66398 4.70794 4.79125 4.84030 4.91804 5.05035 5.12228 5.14831 5.19444 5.31622 5.46915 5.52491 5.62306 5.66623 5.79351 6.14697 6.22692 6.29258 7.35305 8.14107 8.38116 9.30347 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.021142 B = 0.006363 C = 0.005092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.075800 B = 4399.487411 C = 5497.108091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.077 4.077 3 Si 0.974 3.026 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.271 1.271 7 C -0.244 4.244 8 H 0.073 0.927 9 N -0.740 5.740 10 C 0.167 3.833 11 C 0.023 3.977 12 H 0.078 0.922 13 C -0.121 4.121 14 C 0.008 3.992 15 N -0.482 5.482 16 C 0.067 3.933 17 C -0.083 4.083 18 C -0.117 4.117 19 C -0.120 4.120 20 C -0.124 4.124 21 C -0.130 4.130 22 C -0.125 4.125 23 H 0.249 0.751 24 H 0.375 0.625 25 H 0.026 0.974 26 H 0.017 0.983 27 H 0.099 0.901 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.137 0.863 34 H 0.153 0.847 35 H 0.149 0.851 36 H 0.130 0.870 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.529 -16.959 4.746 18.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.269 4.269 3 Si 0.803 3.197 4 H -0.212 1.212 5 H -0.222 1.222 6 H -0.196 1.196 7 C -0.376 4.376 8 H 0.091 0.909 9 N -0.383 5.383 10 C 0.041 3.959 11 C -0.086 4.086 12 H 0.096 0.904 13 C -0.159 4.159 14 C -0.120 4.120 15 N -0.205 5.205 16 C -0.061 4.061 17 C -0.083 4.083 18 C -0.135 4.135 19 C -0.138 4.138 20 C -0.142 4.142 21 C -0.148 4.148 22 C -0.144 4.144 23 H 0.058 0.942 24 H 0.208 0.792 25 H 0.044 0.956 26 H 0.035 0.965 27 H 0.117 0.883 28 H 0.107 0.893 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.155 0.845 34 H 0.171 0.829 35 H 0.166 0.834 36 H 0.148 0.852 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.235 -16.425 5.292 18.033 hybrid contribution -0.181 1.239 -0.794 1.483 sum -5.416 -15.186 4.498 16.739 Atomic orbital electron populations 1.69831 1.06582 1.25845 1.59738 1.25553 0.96420 1.01020 1.03900 0.85125 0.77627 0.79453 0.77472 1.21213 1.22243 1.19582 1.19671 0.91453 0.85587 1.40934 0.90874 1.42502 1.05787 1.00951 1.89086 1.20735 0.93391 0.84498 0.97320 1.23668 0.95107 0.96141 0.93710 0.90407 1.23293 0.97546 0.95143 0.99907 1.23890 0.97060 0.89100 1.01935 1.68620 1.05371 1.15359 1.31198 1.21474 0.89590 1.00583 0.94497 1.19762 0.97346 0.94849 0.96363 1.21238 0.97248 0.95724 0.99338 1.21470 0.97960 1.00211 0.94141 1.21469 0.99931 0.92755 1.00073 1.21345 0.97044 0.98693 0.97687 1.21135 0.98630 0.98768 0.95851 0.94187 0.79220 0.95575 0.96491 0.88254 0.89346 0.89745 0.89463 0.93144 0.92520 0.84502 0.82949 0.83364 0.85206 0.89013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.57 13.06 21.65 0.28 -61.28 16 2 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 3 Si 0.97 47.96 29.55 68.60 2.03 49.98 16 4 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 5 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 6 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 7 C -0.24 -14.41 9.99 84.03 0.84 -13.57 16 8 H 0.07 4.14 7.83 -2.91 -0.02 4.12 16 9 N -0.74 -40.13 5.55 -343.44 -1.91 -42.03 16 10 C 0.17 7.17 6.39 86.38 0.55 7.72 16 11 C 0.02 0.78 3.40 45.02 0.15 0.93 16 12 H 0.08 2.53 7.80 -2.38 -0.02 2.52 16 13 C -0.12 -2.95 7.84 31.24 0.24 -2.71 16 14 C 0.01 0.21 6.95 86.40 0.60 0.81 16 15 N -0.48 -16.67 5.94 -888.48 -5.27 -21.94 16 16 C 0.07 2.34 4.78 85.56 0.41 2.75 16 17 C -0.08 -2.65 5.12 -19.86 -0.10 -2.75 16 18 C -0.12 -2.86 8.98 22.27 0.20 -2.66 16 19 C -0.12 -2.49 10.05 22.27 0.22 -2.26 16 20 C -0.12 -2.74 10.05 22.27 0.22 -2.51 16 21 C -0.13 -3.62 10.05 22.27 0.22 -3.39 16 22 C -0.12 -4.36 9.70 22.27 0.22 -4.14 16 23 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 24 H 0.37 21.46 5.78 -92.70 -0.54 20.92 16 25 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.02 0.76 7.91 -2.39 -0.02 0.74 16 27 H 0.10 1.83 8.14 -2.38 -0.02 1.81 16 28 H 0.09 2.22 7.94 -2.39 -0.02 2.21 16 29 H 0.08 1.72 7.12 -2.39 -0.02 1.70 16 30 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.05 2.24 6.50 -2.39 -0.02 2.22 16 32 H 0.06 1.73 7.63 -2.39 -0.02 1.72 16 33 H 0.14 2.66 7.46 -2.91 -0.02 2.64 16 34 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 35 H 0.15 2.29 8.06 -2.91 -0.02 2.26 16 36 H 0.13 3.18 8.06 -2.91 -0.02 3.16 16 37 H 0.09 3.79 8.06 -2.91 -0.02 3.77 16 Total: -1.00 -70.38 305.15 -0.11 -70.49 By element: Atomic # 1 Polarization: 30.22 SS G_CDS: 0.51 Total: 30.73 kcal Atomic # 6 Polarization: -30.19 SS G_CDS: 4.25 Total: -25.94 kcal Atomic # 7 Polarization: -118.36 SS G_CDS: -6.90 Total: -125.26 kcal Atomic # 14 Polarization: 47.96 SS G_CDS: 2.03 Total: 49.98 kcal Total: -70.38 -0.11 -70.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716211334.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.602 kcal (2) G-P(sol) polarization free energy of solvation -70.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds