Wall clock time and date at job start Mon Mar 30 2020 03:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99745 * 2 1 4 4 H 1.48499 * 109.47166 * 240.00337 * 3 2 1 5 5 H 1.48496 * 109.47469 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46929 * 120.00841 * 3 2 1 7 7 C 1.38811 * 120.00045 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99793 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99868 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99902 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47064 * 179.97438 * 10 9 7 12 12 H 1.09000 * 113.03139 * 287.21345 * 11 10 9 13 13 C 1.53935 * 113.75704 * 155.49405 * 11 10 9 14 14 C 1.53934 * 86.45688 * 222.01365 * 13 11 10 15 15 N 1.47967 * 86.18229 * 23.66908 * 14 13 11 16 16 C 1.46894 * 111.00177 * 222.42116 * 15 14 13 17 17 C 1.50703 * 109.46875 * 268.46860 * 16 15 14 18 18 C 1.38234 * 119.99999 * 269.72738 * 17 16 15 19 19 C 1.38235 * 119.99701 * 179.74301 * 18 17 16 20 20 C 1.38234 * 120.00298 * 0.52849 * 19 18 17 21 21 C 1.38243 * 119.99870 * 359.74821 * 20 19 18 22 22 C 1.38236 * 119.99749 * 89.99945 * 17 16 15 23 23 H 0.96996 * 120.00225 * 359.97438 * 1 2 3 24 24 H 0.97002 * 120.00101 * 359.97438 * 9 7 2 25 25 H 1.09003 * 109.47146 * 59.99487 * 10 9 7 26 26 H 1.08998 * 109.46796 * 299.99784 * 10 9 7 27 27 H 1.09002 * 113.73405 * 107.60297 * 13 11 10 28 28 H 1.09002 * 113.73357 * 336.42207 * 13 11 10 29 29 H 1.09001 * 113.76241 * 137.98405 * 14 13 11 30 30 H 1.08993 * 113.76195 * 269.35483 * 14 13 11 31 31 H 1.08996 * 109.47392 * 28.46784 * 16 15 14 32 32 H 1.08995 * 109.47560 * 148.47006 * 16 15 14 33 33 H 1.07998 * 120.00080 * 0.02562 * 18 17 16 34 34 H 1.08002 * 120.00023 * 180.29457 * 19 18 17 35 35 H 1.08002 * 120.00481 * 179.76534 * 20 19 18 36 36 H 1.07993 * 119.99860 * 179.97438 * 21 20 19 37 37 H 1.07998 * 120.00322 * 0.02562 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0638 -4.8197 0.0001 12 1 0.5614 -4.9507 0.9585 13 6 1.6350 -6.1243 -0.5842 14 6 0.2782 -6.2889 -1.2925 15 7 0.1436 -4.8212 -1.1615 16 6 -1.2190 -4.4516 -0.7562 17 6 -2.0577 -4.2018 -1.9831 18 6 -2.1287 -2.9321 -2.5250 19 6 -2.8937 -2.7041 -3.6536 20 6 -3.5966 -3.7435 -4.2338 21 6 -3.5302 -5.0121 -3.6884 22 6 -2.7605 -5.2412 -2.5632 23 1 -0.4850 0.8400 0.0004 24 1 0.3555 -2.3880 0.0002 25 1 2.6848 -3.7145 0.8894 26 1 2.6847 -3.7145 -0.8905 27 1 1.8345 -6.8903 0.1652 28 1 2.4705 -5.9703 -1.2671 29 1 0.3599 -6.6320 -2.3238 30 1 -0.4544 -6.8504 -0.7130 31 1 -1.6579 -5.2626 -0.1751 32 1 -1.1849 -3.5469 -0.1491 33 1 -1.5828 -2.1192 -2.0694 34 1 -2.9454 -1.7131 -4.0798 35 1 -4.1973 -3.5646 -5.1133 36 1 -4.0795 -5.8240 -4.1415 37 1 -2.7089 -6.2322 -2.1370 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716211335.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:47 Heat of formation + Delta-G solvation = 72.040123 kcal Electronic energy + Delta-G solvation = -17688.918329 eV Core-core repulsion = 15046.362355 eV Total energy + Delta-G solvation = -2642.555974 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.88310 -38.46755 -34.26557 -32.53812 -30.98250 -30.51665 -28.55864 -27.15734 -24.11030 -23.65955 -22.24788 -21.62843 -20.68870 -19.23982 -17.07508 -16.54788 -15.71134 -15.12399 -15.01387 -14.67226 -14.30124 -13.87062 -13.19665 -13.05682 -12.91618 -12.84025 -12.48128 -12.30853 -11.64705 -11.25433 -11.21423 -11.02681 -10.88186 -10.74274 -10.53570 -10.35103 -10.25222 -9.86328 -9.59293 -8.79843 -8.57002 -8.44826 -8.28574 -6.81210 -5.69323 -2.95589 1.67603 1.77657 3.48660 3.52872 3.53804 4.00232 4.38707 4.65404 4.79994 5.04707 5.10698 5.15576 5.28251 5.37008 5.51973 5.58699 5.64197 5.67665 5.81736 5.84297 5.92179 5.97692 6.01558 6.02773 6.31357 6.39971 6.41200 6.45740 6.60486 6.74845 6.83093 6.90457 6.93458 7.11387 7.37394 7.49327 7.76356 8.50658 9.61772 10.21378 10.57040 11.53884 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.017999 B = 0.007434 C = 0.005486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.289289 B = 3765.404490 C = 5102.626735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.905 3.095 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.288 1.288 7 C -0.234 4.234 8 H 0.068 0.932 9 N -0.726 5.726 10 C 0.171 3.829 11 C 0.028 3.972 12 H 0.074 0.926 13 C -0.139 4.139 14 C -0.003 4.003 15 N -0.453 5.453 16 C 0.058 3.942 17 C -0.064 4.064 18 C -0.087 4.087 19 C -0.122 4.122 20 C -0.129 4.129 21 C -0.132 4.132 22 C -0.118 4.118 23 H 0.254 0.746 24 H 0.383 0.617 25 H 0.021 0.979 26 H 0.025 0.975 27 H 0.067 0.933 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.062 0.938 31 H 0.043 0.957 32 H 0.092 0.908 33 H 0.139 0.861 34 H 0.119 0.881 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.911 -12.967 -4.110 14.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.214 1.214 7 C -0.365 4.365 8 H 0.086 0.914 9 N -0.370 5.370 10 C 0.043 3.957 11 C -0.082 4.082 12 H 0.092 0.908 13 C -0.177 4.177 14 C -0.132 4.132 15 N -0.176 5.176 16 C -0.070 4.070 17 C -0.065 4.065 18 C -0.105 4.105 19 C -0.140 4.140 20 C -0.147 4.147 21 C -0.150 4.150 22 C -0.137 4.137 23 H 0.064 0.936 24 H 0.218 0.782 25 H 0.038 0.962 26 H 0.043 0.957 27 H 0.085 0.915 28 H 0.109 0.891 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.110 0.890 33 H 0.157 0.843 34 H 0.137 0.863 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -4.663 -12.402 -4.652 14.042 hybrid contribution -0.204 0.508 0.626 0.831 sum -4.866 -11.894 -4.026 13.467 Atomic orbital electron populations 1.69627 1.04975 1.25514 1.58246 1.24676 0.95525 0.97440 1.03386 0.86289 0.78510 0.83763 0.77749 1.21410 1.21792 1.21449 1.19203 0.90969 0.84285 1.42052 0.91395 1.42232 1.05867 0.99700 1.89242 1.20560 0.92503 0.84845 0.97782 1.23751 0.95113 0.96060 0.93247 0.90824 1.23359 0.97716 0.96885 0.99768 1.23937 0.96798 0.91218 1.01203 1.68604 1.05397 1.12231 1.31325 1.21666 0.89615 1.01658 0.94041 1.19705 0.96396 0.93460 0.96915 1.21408 0.96644 0.97370 0.95075 1.21181 0.97469 0.98933 0.96416 1.21065 1.00290 0.93342 1.00009 1.20969 1.00224 0.96844 0.96929 1.20942 0.97957 0.98174 0.96582 0.93644 0.78221 0.96154 0.95689 0.91481 0.89112 0.89907 0.91963 0.93840 0.88952 0.84316 0.86322 0.86799 0.86839 0.87060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.01 13.06 55.49 0.72 -27.29 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.73 29.55 -169.99 -5.02 17.71 16 4 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 7 C -0.23 -6.66 9.99 -15.06 -0.15 -6.81 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.73 -18.75 5.55 -59.91 -0.33 -19.08 16 10 C 0.17 3.58 6.39 -4.04 -0.03 3.56 16 11 C 0.03 0.46 3.39 -66.52 -0.23 0.24 16 12 H 0.07 1.21 7.93 -51.93 -0.41 0.79 16 13 C -0.14 -1.85 7.83 -25.80 -0.20 -2.06 16 14 C 0.00 -0.03 7.96 -2.76 -0.02 -0.06 16 15 N -0.45 -7.76 5.83 -231.91 -1.35 -9.11 16 16 C 0.06 0.98 4.78 -4.98 -0.02 0.96 16 17 C -0.06 -1.08 5.45 -104.62 -0.57 -1.65 16 18 C -0.09 -1.58 9.70 -39.58 -0.38 -1.97 16 19 C -0.12 -1.94 10.05 -39.58 -0.40 -2.34 16 20 C -0.13 -1.78 10.05 -39.58 -0.40 -2.18 16 21 C -0.13 -1.76 10.05 -39.58 -0.40 -2.16 16 22 C -0.12 -1.70 9.70 -39.58 -0.38 -2.09 16 23 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 24 H 0.38 10.21 5.77 -40.82 -0.24 9.97 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.03 0.54 7.91 -51.93 -0.41 0.13 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.09 1.23 7.94 -51.93 -0.41 0.82 16 29 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.06 0.74 7.46 -51.93 -0.39 0.35 16 31 H 0.04 0.64 7.30 -51.93 -0.38 0.26 16 32 H 0.09 1.81 6.37 -51.93 -0.33 1.48 16 33 H 0.14 2.96 8.06 -52.49 -0.42 2.54 16 34 H 0.12 1.72 8.06 -52.49 -0.42 1.29 16 35 H 0.11 1.28 8.06 -52.49 -0.42 0.85 16 36 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 37 H 0.11 1.38 8.06 -52.49 -0.42 0.95 16 LS Contribution 307.71 15.07 4.64 4.64 Total: -1.00 -30.75 307.71 -10.12 -40.87 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -5.50 Total: 9.34 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: -3.28 Total: -17.07 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: -0.96 Total: -55.48 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.75 -10.12 -40.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716211335.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.908 kcal (2) G-P(sol) polarization free energy of solvation -30.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds