Wall clock time and date at job start Mon Mar 30 2020 03:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99745 * 2 1 4 4 H 1.48499 * 109.47166 * 240.00337 * 3 2 1 5 5 H 1.48496 * 109.47469 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46929 * 120.00841 * 3 2 1 7 7 C 1.38811 * 120.00045 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99793 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99868 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99902 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47064 * 179.97438 * 10 9 7 12 12 H 1.09000 * 113.03139 * 287.21345 * 11 10 9 13 13 C 1.53935 * 113.75704 * 155.49405 * 11 10 9 14 14 C 1.53934 * 86.45688 * 222.01365 * 13 11 10 15 15 N 1.47967 * 86.18229 * 23.66908 * 14 13 11 16 16 C 1.46894 * 111.00177 * 222.42116 * 15 14 13 17 17 C 1.50703 * 109.46875 * 268.46860 * 16 15 14 18 18 C 1.38234 * 119.99999 * 269.72738 * 17 16 15 19 19 C 1.38235 * 119.99701 * 179.74301 * 18 17 16 20 20 C 1.38234 * 120.00298 * 0.52849 * 19 18 17 21 21 C 1.38243 * 119.99870 * 359.74821 * 20 19 18 22 22 C 1.38236 * 119.99749 * 89.99945 * 17 16 15 23 23 H 0.96996 * 120.00225 * 359.97438 * 1 2 3 24 24 H 0.97002 * 120.00101 * 359.97438 * 9 7 2 25 25 H 1.09003 * 109.47146 * 59.99487 * 10 9 7 26 26 H 1.08998 * 109.46796 * 299.99784 * 10 9 7 27 27 H 1.09002 * 113.73405 * 107.60297 * 13 11 10 28 28 H 1.09002 * 113.73357 * 336.42207 * 13 11 10 29 29 H 1.09001 * 113.76241 * 137.98405 * 14 13 11 30 30 H 1.08993 * 113.76195 * 269.35483 * 14 13 11 31 31 H 1.08996 * 109.47392 * 28.46784 * 16 15 14 32 32 H 1.08995 * 109.47560 * 148.47006 * 16 15 14 33 33 H 1.07998 * 120.00080 * 0.02562 * 18 17 16 34 34 H 1.08002 * 120.00023 * 180.29457 * 19 18 17 35 35 H 1.08002 * 120.00481 * 179.76534 * 20 19 18 36 36 H 1.07993 * 119.99860 * 179.97438 * 21 20 19 37 37 H 1.07998 * 120.00322 * 0.02562 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0638 -4.8197 0.0001 12 1 0.5614 -4.9507 0.9585 13 6 1.6350 -6.1243 -0.5842 14 6 0.2782 -6.2889 -1.2925 15 7 0.1436 -4.8212 -1.1615 16 6 -1.2190 -4.4516 -0.7562 17 6 -2.0577 -4.2018 -1.9831 18 6 -2.1287 -2.9321 -2.5250 19 6 -2.8937 -2.7041 -3.6536 20 6 -3.5966 -3.7435 -4.2338 21 6 -3.5302 -5.0121 -3.6884 22 6 -2.7605 -5.2412 -2.5632 23 1 -0.4850 0.8400 0.0004 24 1 0.3555 -2.3880 0.0002 25 1 2.6848 -3.7145 0.8894 26 1 2.6847 -3.7145 -0.8905 27 1 1.8345 -6.8903 0.1652 28 1 2.4705 -5.9703 -1.2671 29 1 0.3599 -6.6320 -2.3238 30 1 -0.4544 -6.8504 -0.7130 31 1 -1.6579 -5.2626 -0.1751 32 1 -1.1849 -3.5469 -0.1491 33 1 -1.5828 -2.1192 -2.0694 34 1 -2.9454 -1.7131 -4.0798 35 1 -4.1973 -3.5646 -5.1133 36 1 -4.0795 -5.8240 -4.1415 37 1 -2.7089 -6.2322 -2.1370 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716211335.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:47 Heat of formation + Delta-G solvation = 51.829935 kcal Electronic energy + Delta-G solvation = -17689.794709 eV Core-core repulsion = 15046.362355 eV Total energy + Delta-G solvation = -2643.432354 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.12621 -39.65886 -36.25413 -33.82297 -32.97211 -31.70338 -29.81009 -28.82343 -25.52088 -25.31971 -23.57800 -23.13223 -21.90644 -20.53169 -19.13473 -17.72055 -16.94168 -16.74171 -16.45251 -16.10416 -15.75817 -15.34779 -14.88999 -14.69221 -14.28417 -14.15786 -13.84994 -13.51150 -13.15925 -13.00650 -12.71348 -12.58443 -12.29675 -12.21532 -12.15422 -11.90653 -11.63711 -11.45756 -11.37483 -10.91123 -9.76342 -9.66447 -9.50312 -8.94004 -7.91776 -5.19139 0.49917 0.57099 1.44905 1.48524 1.54356 2.55975 2.80516 3.17899 3.40859 3.61031 3.81307 3.88495 4.00566 4.20140 4.25245 4.33695 4.38063 4.41077 4.49089 4.59757 4.65926 4.72046 4.81515 4.85066 4.92492 5.05543 5.13014 5.18788 5.22598 5.32610 5.47549 5.55176 5.63297 5.70262 5.85507 6.17574 6.25309 6.30245 7.36496 8.15303 8.39768 9.31032 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.017999 B = 0.007434 C = 0.005486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.289289 B = 3765.404490 C = 5102.626735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.074 4.074 3 Si 0.972 3.028 4 H -0.281 1.281 5 H -0.295 1.295 6 H -0.277 1.277 7 C -0.246 4.246 8 H 0.072 0.928 9 N -0.739 5.739 10 C 0.167 3.833 11 C 0.023 3.977 12 H 0.078 0.922 13 C -0.121 4.121 14 C 0.007 3.993 15 N -0.484 5.484 16 C 0.067 3.933 17 C -0.078 4.078 18 C -0.122 4.122 19 C -0.135 4.135 20 C -0.125 4.125 21 C -0.122 4.122 22 C -0.115 4.115 23 H 0.249 0.751 24 H 0.376 0.624 25 H 0.025 0.975 26 H 0.016 0.984 27 H 0.098 0.902 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.048 0.952 33 H 0.087 0.913 34 H 0.121 0.879 35 H 0.147 0.853 36 H 0.154 0.846 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.310 -15.556 -5.008 17.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.267 4.267 3 Si 0.801 3.199 4 H -0.208 1.208 5 H -0.221 1.221 6 H -0.203 1.203 7 C -0.378 4.378 8 H 0.090 0.910 9 N -0.382 5.382 10 C 0.040 3.960 11 C -0.086 4.086 12 H 0.096 0.904 13 C -0.159 4.159 14 C -0.121 4.121 15 N -0.207 5.207 16 C -0.061 4.061 17 C -0.079 4.079 18 C -0.141 4.141 19 C -0.153 4.153 20 C -0.143 4.143 21 C -0.140 4.140 22 C -0.134 4.134 23 H 0.058 0.942 24 H 0.209 0.791 25 H 0.043 0.957 26 H 0.034 0.966 27 H 0.117 0.883 28 H 0.106 0.894 29 H 0.109 0.891 30 H 0.105 0.895 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.106 0.894 34 H 0.139 0.861 35 H 0.165 0.835 36 H 0.171 0.829 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.031 -15.024 -5.547 16.787 hybrid contribution -0.085 1.263 0.870 1.536 sum -5.116 -13.761 -4.677 15.408 Atomic orbital electron populations 1.69814 1.06403 1.25804 1.59474 1.25517 0.96432 1.00835 1.03876 0.85236 0.77219 0.79373 0.78073 1.20763 1.22093 1.20310 1.19609 0.91383 0.85625 1.41227 0.91042 1.42464 1.05791 1.00871 1.89101 1.20729 0.93418 0.84592 0.97230 1.23683 0.94999 0.96112 0.93819 0.90422 1.23279 0.97591 0.95091 0.99945 1.24010 0.97143 0.88813 1.02171 1.68573 1.05337 1.15352 1.31454 1.21524 0.90181 1.00462 0.93977 1.19775 0.97297 0.93544 0.97250 1.21154 0.98728 0.97125 0.97077 1.21306 0.97799 1.00231 0.95939 1.21428 0.99459 0.92858 1.00570 1.21459 0.99032 0.97569 0.95927 1.21225 0.97010 0.98443 0.96703 0.94238 0.79136 0.95690 0.96594 0.88318 0.89446 0.89113 0.89499 0.91369 0.93312 0.89445 0.86088 0.83539 0.82873 0.84194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.71 13.06 21.65 0.28 -60.42 16 2 C -0.07 -4.43 5.50 84.86 0.47 -3.97 16 3 Si 0.97 47.93 29.55 68.60 2.03 49.96 16 4 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 5 H -0.29 -14.55 7.11 99.48 0.71 -13.84 16 6 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 7 C -0.25 -14.50 9.99 84.03 0.84 -13.66 16 8 H 0.07 4.05 7.83 -2.91 -0.02 4.02 16 9 N -0.74 -39.94 5.55 -343.44 -1.91 -41.84 16 10 C 0.17 7.16 6.39 86.38 0.55 7.71 16 11 C 0.02 0.78 3.39 44.98 0.15 0.93 16 12 H 0.08 2.51 7.93 -2.39 -0.02 2.49 16 13 C -0.12 -2.91 7.83 31.24 0.24 -2.67 16 14 C 0.01 0.16 7.96 86.41 0.69 0.85 16 15 N -0.48 -16.47 5.83 -887.63 -5.18 -21.65 16 16 C 0.07 2.29 4.78 85.56 0.41 2.70 16 17 C -0.08 -2.66 5.45 -19.86 -0.11 -2.77 16 18 C -0.12 -4.79 9.70 22.27 0.22 -4.58 16 19 C -0.13 -4.39 10.05 22.27 0.22 -4.17 16 20 C -0.13 -3.17 10.05 22.27 0.22 -2.95 16 21 C -0.12 -2.81 10.05 22.27 0.22 -2.59 16 22 C -0.12 -3.03 9.70 22.27 0.22 -2.81 16 23 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 24 H 0.38 21.36 5.77 -92.71 -0.54 20.82 16 25 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.02 0.71 7.91 -2.39 -0.02 0.69 16 27 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.09 2.18 7.94 -2.39 -0.02 2.16 16 29 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.09 1.67 7.46 -2.39 -0.02 1.65 16 31 H 0.07 1.92 7.30 -2.39 -0.02 1.91 16 32 H 0.05 2.08 6.37 -2.39 -0.02 2.06 16 33 H 0.09 4.25 8.06 -2.91 -0.02 4.23 16 34 H 0.12 3.70 8.06 -2.91 -0.02 3.67 16 35 H 0.15 2.74 8.06 -2.91 -0.02 2.71 16 36 H 0.15 2.37 8.06 -2.91 -0.02 2.34 16 37 H 0.14 2.83 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -70.11 307.71 0.08 -70.03 By element: Atomic # 1 Polarization: 31.39 SS G_CDS: 0.51 Total: 31.90 kcal Atomic # 6 Polarization: -32.31 SS G_CDS: 4.35 Total: -27.97 kcal Atomic # 7 Polarization: -117.12 SS G_CDS: -6.80 Total: -123.92 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 2.03 Total: 49.96 kcal Total: -70.11 0.08 -70.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716211335.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.856 kcal (2) G-P(sol) polarization free energy of solvation -70.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds