Wall clock time and date at job start Mon Mar 30 2020 03:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 119.99725 * 2 1 4 4 H 1.48505 * 109.47079 * 89.99955 * 3 2 1 5 5 H 1.48499 * 109.47178 * 210.00047 * 3 2 1 6 6 H 1.48500 * 109.47239 * 330.00238 * 3 2 1 7 7 C 1.37873 * 120.00444 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00122 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00253 * 180.02562 * 7 2 1 10 10 N 1.46903 * 109.47300 * 174.56480 * 9 7 2 11 11 C 1.46427 * 110.99681 * 290.52631 * 10 9 7 12 12 C 1.53369 * 108.66354 * 287.85312 * 11 10 9 13 13 C 1.53038 * 107.94415 * 291.79349 * 12 11 10 14 14 H 1.08999 * 109.40579 * 287.25062 * 13 12 11 15 15 C 1.53001 * 109.44138 * 167.35178 * 13 12 11 16 16 N 1.46900 * 109.47286 * 63.15145 * 15 13 12 17 17 C 1.50805 * 109.66331 * 47.29011 * 13 12 11 18 18 C 1.38625 * 118.12301 * 164.70333 * 17 13 12 19 19 C 1.38049 * 120.48516 * 179.36449 * 18 17 13 20 20 C 1.38313 * 119.88770 * 359.97438 * 19 18 17 21 21 C 1.37806 * 119.95667 * 0.13832 * 20 19 18 22 22 C 1.38366 * 122.01205 * 344.29155 * 17 13 12 23 23 H 0.97004 * 120.00376 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47267 * 294.56427 * 9 7 2 25 25 H 1.08995 * 109.47429 * 54.56287 * 9 7 2 26 26 H 1.08995 * 109.60673 * 47.60985 * 11 10 9 27 27 H 1.09009 * 109.60138 * 168.10093 * 11 10 9 28 28 H 1.09000 * 109.77188 * 172.17633 * 12 11 10 29 29 H 1.09007 * 109.75121 * 51.39896 * 12 11 10 30 30 H 1.08997 * 109.47429 * 183.15499 * 15 13 12 31 31 H 1.09005 * 109.46753 * 303.14990 * 15 13 12 32 32 H 1.00893 * 110.99619 * 62.88531 * 16 15 13 33 33 H 1.00896 * 111.00083 * 186.84136 * 16 15 13 34 34 H 1.07995 * 119.75487 * 359.35018 * 18 17 13 35 35 H 1.08001 * 120.05438 * 180.02562 * 19 18 17 36 36 H 1.08002 * 120.02177 * 180.15636 * 20 19 18 37 37 H 1.08002 * 119.79326 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4464 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1939 0.0000 10 7 4.0012 -2.5728 0.1305 11 6 3.7237 -3.1039 1.4665 12 6 4.6602 -2.4206 2.4706 13 6 6.0867 -2.8942 2.1827 14 1 6.1980 -3.9280 2.5098 15 6 7.0794 -2.0106 2.9408 16 7 6.8636 -2.1602 4.3861 17 6 6.3625 -2.8036 0.7029 18 6 7.6801 -2.8757 0.2782 19 6 7.9871 -2.8112 -1.0662 20 6 6.9747 -2.6740 -1.9986 21 6 5.6627 -2.5993 -1.5837 22 6 5.3463 -2.6610 -0.2253 23 1 -0.4851 0.8400 -0.0004 24 1 3.8752 -0.7661 -0.9342 25 1 3.8745 -0.5987 0.8378 26 1 2.6874 -2.8977 1.7341 27 1 3.8994 -4.1797 1.4761 28 1 4.3776 -2.6979 3.4862 29 1 4.6002 -1.3385 2.3529 30 1 8.0971 -2.3117 2.6924 31 1 6.9291 -0.9690 2.6568 32 1 7.0428 -3.1079 4.6823 33 1 7.4290 -1.5058 4.9058 34 1 8.4722 -2.9830 1.0044 35 1 9.0160 -2.8685 -1.3894 36 1 7.2123 -2.6258 -3.0510 37 1 4.8743 -2.4918 -2.3140 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719606819.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:19 Heat of formation + Delta-G solvation = 29.030333 kcal Electronic energy + Delta-G solvation = -18196.431491 eV Core-core repulsion = 15552.010472 eV Total energy + Delta-G solvation = -2644.421019 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.24259 -36.57753 -35.80185 -32.71367 -31.94394 -29.91164 -29.53500 -27.75471 -25.35731 -23.06048 -22.61413 -21.96145 -20.49971 -18.81651 -17.02063 -16.40619 -16.00114 -15.32690 -15.28604 -14.42763 -14.37777 -14.04860 -13.59666 -13.46438 -13.00226 -12.61064 -12.41519 -12.25681 -12.00435 -11.76264 -11.36148 -11.10959 -10.91544 -10.76280 -10.58370 -10.36302 -10.05588 -9.88349 -9.39137 -8.75163 -8.61389 -8.57044 -8.37332 -7.13075 -6.08827 -4.06813 1.71778 1.79686 3.26709 3.34538 3.37568 4.08988 4.39189 4.47160 4.65764 4.95081 5.09174 5.18562 5.23572 5.34226 5.36615 5.52715 5.59617 5.72892 5.81063 5.94805 6.06453 6.10860 6.21153 6.38469 6.45986 6.51003 6.66014 6.76139 6.85168 6.86513 6.96049 6.99039 7.05993 7.26711 7.36196 7.58883 7.80905 8.18920 8.61584 8.99798 9.52264 11.04015 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.019973 B = 0.008384 C = 0.007023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.579587 B = 3338.749646 C = 3985.818561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.870 3.130 4 H -0.276 1.276 5 H -0.267 1.267 6 H -0.284 1.284 7 C -0.513 4.513 8 H 0.083 0.917 9 C 0.171 3.829 10 N -0.491 5.491 11 C 0.060 3.940 12 C -0.138 4.138 13 C -0.038 4.038 14 H 0.073 0.927 15 C 0.071 3.929 16 N -0.847 5.847 17 C -0.131 4.131 18 C -0.106 4.106 19 C -0.155 4.155 20 C -0.109 4.109 21 C -0.127 4.127 22 C 0.139 3.861 23 H 0.264 0.736 24 H 0.029 0.971 25 H -0.002 1.002 26 H 0.097 0.903 27 H 0.061 0.939 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.027 0.973 31 H 0.071 0.929 32 H 0.338 0.662 33 H 0.339 0.661 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.117 0.883 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.211 -4.915 3.715 17.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.697 3.303 4 H -0.201 1.201 5 H -0.192 1.192 6 H -0.210 1.210 7 C -0.552 4.552 8 H 0.101 0.899 9 C 0.048 3.952 10 N -0.205 5.205 11 C -0.067 4.067 12 C -0.177 4.177 13 C -0.057 4.057 14 H 0.091 0.909 15 C -0.059 4.059 16 N -0.376 5.376 17 C -0.135 4.135 18 C -0.125 4.125 19 C -0.173 4.173 20 C -0.128 4.128 21 C -0.147 4.147 22 C 0.041 3.959 23 H 0.074 0.926 24 H 0.047 0.953 25 H 0.016 0.984 26 H 0.116 0.884 27 H 0.080 0.920 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.045 0.955 31 H 0.090 0.910 32 H 0.150 0.850 33 H 0.152 0.848 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.135 0.865 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 14.939 -4.837 3.245 16.035 hybrid contribution 1.855 1.104 0.474 2.210 sum 16.795 -3.733 3.719 17.602 Atomic orbital electron populations 1.69881 1.06076 1.26919 1.50650 1.24847 0.94705 0.98714 0.94706 0.86931 0.80441 0.84207 0.78678 1.20132 1.19174 1.21011 1.21009 0.88425 0.94889 1.50835 0.89920 1.20292 0.97082 0.81870 0.95911 1.58615 1.11123 1.23800 1.27002 1.22171 1.01055 0.97601 0.85907 1.22079 0.93594 1.01573 1.00410 1.20003 0.96304 0.99060 0.90336 0.90876 1.21872 0.96022 1.00487 0.87525 1.58590 1.64402 1.09990 1.04655 1.19889 0.93040 1.05730 0.94822 1.20875 0.95259 1.00724 0.95624 1.20856 0.98609 1.04658 0.93224 1.20911 0.92699 1.00116 0.99078 1.21161 0.96493 1.02205 0.94852 1.18874 0.88701 0.95492 0.92849 0.92561 0.95254 0.98390 0.88427 0.92036 0.90551 0.91286 0.95488 0.91021 0.85038 0.84846 0.87007 0.86923 0.86519 0.85556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.24 13.96 55.43 0.77 -26.46 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.87 21.53 27.37 -169.99 -4.65 16.88 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 5 H -0.27 -6.43 6.70 56.52 0.38 -6.06 16 6 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.51 -14.45 8.83 -34.44 -0.30 -14.75 16 8 H 0.08 2.53 7.87 -52.49 -0.41 2.12 16 9 C 0.17 4.19 3.61 -4.98 -0.02 4.17 16 10 N -0.49 -10.58 4.45 -172.66 -0.77 -11.35 16 11 C 0.06 1.17 5.71 -3.89 -0.02 1.14 16 12 C -0.14 -2.37 5.06 -26.52 -0.13 -2.50 16 13 C -0.04 -0.57 2.53 -91.70 -0.23 -0.80 16 14 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 15 C 0.07 0.90 5.81 -3.82 -0.02 0.88 16 16 N -0.85 -9.21 9.22 -10.37 -0.10 -9.31 16 17 C -0.13 -2.17 5.41 -104.38 -0.56 -2.74 16 18 C -0.11 -1.52 9.06 -39.51 -0.36 -1.88 16 19 C -0.15 -2.13 10.05 -39.62 -0.40 -2.53 16 20 C -0.11 -1.63 10.03 -39.71 -0.40 -2.03 16 21 C -0.13 -2.28 9.18 -39.22 -0.36 -2.64 16 22 C 0.14 2.68 5.11 -83.85 -0.43 2.25 16 23 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 24 H 0.03 0.74 6.90 -51.93 -0.36 0.38 16 25 H 0.00 -0.04 5.38 -51.93 -0.28 -0.32 16 26 H 0.10 2.08 6.99 -51.93 -0.36 1.72 16 27 H 0.06 1.09 8.11 -51.92 -0.42 0.67 16 28 H 0.08 1.23 8.08 -51.93 -0.42 0.81 16 29 H 0.07 1.36 6.26 -51.93 -0.33 1.03 16 30 H 0.03 0.30 6.38 -51.93 -0.33 -0.03 16 31 H 0.07 1.02 8.13 -51.93 -0.42 0.60 16 32 H 0.34 3.10 9.06 -39.30 -0.36 2.75 16 33 H 0.34 3.05 9.08 -39.29 -0.36 2.69 16 34 H 0.11 1.33 6.45 -52.49 -0.34 0.99 16 35 H 0.11 1.24 8.06 -52.49 -0.42 0.82 16 36 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 37 H 0.13 2.31 8.06 -52.49 -0.42 1.89 16 LS Contribution 291.08 15.07 4.39 4.39 Total: -1.00 -30.39 291.08 -8.93 -39.32 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -5.23 Total: 5.99 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: -3.34 Total: -19.45 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: -0.09 Total: -47.12 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.65 Total: 16.88 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.39 -8.93 -39.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719606819.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.349 kcal (2) G-P(sol) polarization free energy of solvation -30.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds