Wall clock time and date at job start Mon Mar 30 2020 03:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99899 * 2 1 4 4 H 1.48499 * 109.46682 * 239.99413 * 3 2 1 5 5 H 1.48499 * 109.47165 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47325 * 119.99543 * 3 2 1 7 7 C 1.37873 * 119.99945 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99699 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00225 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.47410 * 174.68710 * 9 7 2 11 11 C 1.46638 * 110.99700 * 306.55989 * 10 9 7 12 12 C 1.50617 * 110.56018 * 288.89416 * 11 10 9 13 13 C 1.38739 * 118.42545 * 162.28945 * 12 11 10 14 14 C 1.38013 * 120.37483 * 179.80054 * 13 12 11 15 15 C 1.38259 * 119.87024 * 0.30565 * 14 13 12 16 16 C 1.38034 * 119.82985 * 0.09849 * 15 14 13 17 17 C 1.37832 * 121.84980 * 342.85096 * 12 11 10 18 18 C 1.50717 * 121.65643 * 0.06217 * 17 12 11 19 19 C 1.47156 * 111.00009 * 183.56480 * 10 9 7 20 20 H 1.09001 * 109.62907 * 171.89544 * 19 10 9 21 21 C 1.52998 * 109.62810 * 292.47778 * 19 10 9 22 22 N 1.46901 * 109.47263 * 304.02258 * 21 19 10 23 23 H 0.97006 * 120.00033 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.46927 * 54.68726 * 9 7 2 25 25 H 1.08993 * 109.47217 * 294.69069 * 9 7 2 26 26 H 1.09003 * 109.27352 * 49.38341 * 11 10 9 27 27 H 1.08998 * 109.26863 * 168.85612 * 11 10 9 28 28 H 1.07995 * 119.81612 * 0.07430 * 13 12 11 29 29 H 1.07996 * 120.06808 * 180.33708 * 14 13 12 30 30 H 1.07998 * 120.08895 * 180.11729 * 15 14 13 31 31 H 1.07996 * 119.83454 * 179.97438 * 16 15 14 32 32 H 1.08996 * 109.39166 * 103.42280 * 18 17 12 33 33 H 1.09010 * 109.38703 * 223.11780 * 18 17 12 34 34 H 1.08996 * 109.47283 * 64.02136 * 21 19 10 35 35 H 1.09006 * 109.46891 * 184.02029 * 21 19 10 36 36 H 1.00896 * 111.00078 * 180.02562 * 22 21 19 37 37 H 1.00898 * 110.99642 * 303.95051 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2005 -3.6128 -0.1271 11 6 3.0712 -3.4299 -1.2927 12 6 2.2965 -3.6319 -2.5685 13 6 2.8340 -3.1458 -3.7516 14 6 2.1602 -3.3122 -4.9445 15 6 0.9396 -3.9613 -4.9611 16 6 0.3994 -4.4383 -3.7838 17 6 1.0753 -4.2708 -2.5845 18 6 0.4446 -4.8032 -1.3234 19 6 1.4940 -4.9006 -0.2158 20 1 2.2045 -5.6924 -0.4531 21 6 0.8075 -5.2031 1.1176 22 7 1.8029 -5.1775 2.1977 23 1 -0.4850 0.8401 -0.0004 24 1 0.5552 -2.5169 -0.8384 25 1 0.6973 -2.5989 0.9340 26 1 3.4870 -2.4224 -1.2768 27 1 3.8843 -4.1547 -1.2516 28 1 3.7871 -2.6381 -3.7396 29 1 2.5858 -2.9366 -5.8633 30 1 0.4102 -4.0952 -5.8929 31 1 -0.5542 -4.9450 -3.7967 32 1 -0.3542 -4.1324 -1.0072 33 1 0.0292 -5.7925 -1.5163 34 1 0.0422 -4.4516 1.3110 35 1 0.3453 -6.1893 1.0727 36 1 1.3740 -5.3750 3.0894 37 1 2.5573 -5.8205 2.0094 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721595897.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:51 Heat of formation + Delta-G solvation = 32.761500 kcal Electronic energy + Delta-G solvation = -18370.314009 eV Core-core repulsion = 15726.054786 eV Total energy + Delta-G solvation = -2644.259223 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.90482 -37.05449 -33.88902 -32.60962 -31.94699 -30.35109 -28.87552 -26.99000 -24.47875 -24.17790 -22.03697 -21.66286 -20.79875 -18.25600 -16.60244 -15.82208 -15.42741 -15.00069 -14.90467 -14.44547 -14.33016 -13.87518 -13.41875 -13.29563 -12.89440 -12.55270 -12.14891 -11.92062 -11.73158 -11.35512 -11.13087 -10.92342 -10.84657 -10.68821 -10.39582 -10.31100 -10.21290 -9.65169 -8.98906 -8.35364 -8.27933 -8.07087 -7.98895 -7.04539 -5.94244 -3.93299 1.84433 1.87489 3.38150 3.41881 3.44819 4.22781 4.49194 4.80969 5.01298 5.28923 5.32331 5.39844 5.42936 5.49591 5.53626 5.71801 5.75281 5.86677 5.93020 6.06942 6.10285 6.24641 6.39160 6.45989 6.50012 6.58995 6.70676 6.91228 6.94454 7.21715 7.42897 7.49942 7.60104 7.63361 7.87055 7.92684 8.19673 8.33673 8.68076 9.13197 9.69313 11.17123 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.015441 B = 0.010466 C = 0.007307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.877889 B = 2674.711318 C = 3831.071020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.505 4.505 8 H 0.061 0.939 9 C 0.189 3.811 10 N -0.500 5.500 11 C 0.090 3.910 12 C -0.084 4.084 13 C -0.115 4.115 14 C -0.129 4.129 15 C -0.133 4.133 16 C -0.123 4.123 17 C -0.069 4.069 18 C -0.113 4.113 19 C 0.084 3.916 20 H 0.066 0.934 21 C 0.077 3.923 22 N -0.825 5.825 23 H 0.259 0.741 24 H 0.002 0.998 25 H 0.031 0.969 26 H 0.103 0.897 27 H 0.064 0.936 28 H 0.118 0.882 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.086 0.914 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.015 0.985 36 H 0.330 0.670 37 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.074 -11.069 -4.747 12.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.544 4.544 8 H 0.079 0.921 9 C 0.064 3.936 10 N -0.221 5.221 11 C -0.038 4.038 12 C -0.086 4.086 13 C -0.134 4.134 14 C -0.147 4.147 15 C -0.151 4.151 16 C -0.141 4.141 17 C -0.069 4.069 18 C -0.152 4.152 19 C -0.026 4.026 20 H 0.084 0.916 21 C -0.054 4.054 22 N -0.353 5.353 23 H 0.069 0.931 24 H 0.020 0.980 25 H 0.049 0.951 26 H 0.121 0.879 27 H 0.082 0.918 28 H 0.136 0.864 29 H 0.132 0.868 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.104 0.896 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.033 0.967 36 H 0.142 0.858 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.314 -10.169 -4.474 11.348 hybrid contribution -0.552 0.086 -0.808 0.982 sum 1.762 -10.083 -5.282 11.518 Atomic orbital electron populations 1.69943 1.05985 1.26574 1.51294 1.24925 0.94787 0.99034 0.95607 0.86655 0.79537 0.83224 0.78565 1.20398 1.21480 1.20181 1.21142 0.93212 0.90268 1.49734 0.92079 1.19782 0.90627 0.86884 0.96261 1.62711 1.22392 1.01495 1.35518 1.21224 0.94924 1.02965 0.84722 1.20637 0.95183 0.95663 0.97076 1.21065 1.00181 0.99915 0.92235 1.20965 0.95808 1.00234 0.97693 1.20900 0.96406 1.00242 0.97592 1.20983 0.99423 1.01245 0.92415 1.19487 0.94437 0.98473 0.94553 1.21105 0.99917 1.00502 0.93634 1.21658 0.93983 0.94593 0.92377 0.91616 1.21751 0.94417 0.98059 0.91209 1.58363 1.12888 1.60423 1.03632 0.93091 0.97999 0.95123 0.87912 0.91808 0.86435 0.86839 0.86903 0.86911 0.89594 0.91712 0.90626 0.96676 0.85791 0.85514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.50 -14.23 8.20 -34.44 -0.28 -14.51 16 8 H 0.06 1.70 6.50 -52.48 -0.34 1.36 16 9 C 0.19 4.89 3.86 -4.98 -0.02 4.87 16 10 N -0.50 -10.66 4.60 -229.66 -1.06 -11.72 16 11 C 0.09 1.81 5.31 -5.16 -0.03 1.78 16 12 C -0.08 -1.62 5.37 -104.63 -0.56 -2.18 16 13 C -0.12 -2.03 9.65 -39.48 -0.38 -2.42 16 14 C -0.13 -2.05 10.05 -39.66 -0.40 -2.45 16 15 C -0.13 -2.09 10.05 -39.65 -0.40 -2.49 16 16 C -0.12 -2.06 9.66 -39.49 -0.38 -2.44 16 17 C -0.07 -1.30 5.08 -104.60 -0.53 -1.83 16 18 C -0.11 -1.98 4.46 -27.93 -0.12 -2.10 16 19 C 0.08 1.49 2.42 -67.63 -0.16 1.32 16 20 H 0.07 1.09 8.05 -51.93 -0.42 0.67 16 21 C 0.08 1.24 6.01 -3.82 -0.02 1.22 16 22 N -0.82 -12.74 9.38 -10.37 -0.10 -12.84 16 23 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 24 H 0.00 0.06 5.43 -51.93 -0.28 -0.22 16 25 H 0.03 0.87 6.80 -51.93 -0.35 0.51 16 26 H 0.10 2.25 5.82 -51.93 -0.30 1.95 16 27 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.12 1.86 8.06 -52.49 -0.42 1.44 16 29 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 30 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 31 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 32 H 0.09 1.70 6.72 -51.93 -0.35 1.35 16 33 H 0.06 0.95 8.14 -51.92 -0.42 0.53 16 34 H 0.08 1.40 6.87 -51.93 -0.36 1.05 16 35 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 36 H 0.33 4.34 9.08 -39.29 -0.36 3.98 16 37 H 0.33 4.53 8.99 -39.29 -0.35 4.18 16 LS Contribution 292.91 15.07 4.41 4.41 Total: -1.00 -31.17 292.91 -9.62 -40.79 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -5.21 Total: 8.31 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: -3.39 Total: -19.67 kcal Atomic # 7 Polarization: -50.46 SS G_CDS: -0.42 Total: -50.88 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.17 -9.62 -40.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721595897.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.553 kcal (2) G-P(sol) polarization free energy of solvation -31.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds