Wall clock time and date at job start Mon Mar 30 2020 03:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99899 * 2 1 4 4 H 1.48499 * 109.46682 * 239.99413 * 3 2 1 5 5 H 1.48499 * 109.47165 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47325 * 119.99543 * 3 2 1 7 7 C 1.37873 * 119.99945 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99699 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00225 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.47410 * 174.68710 * 9 7 2 11 11 C 1.46638 * 110.99700 * 306.55989 * 10 9 7 12 12 C 1.50617 * 110.56018 * 288.89416 * 11 10 9 13 13 C 1.38739 * 118.42545 * 162.28945 * 12 11 10 14 14 C 1.38013 * 120.37483 * 179.80054 * 13 12 11 15 15 C 1.38259 * 119.87024 * 0.30565 * 14 13 12 16 16 C 1.38034 * 119.82985 * 0.09849 * 15 14 13 17 17 C 1.37832 * 121.84980 * 342.85096 * 12 11 10 18 18 C 1.50717 * 121.65643 * 0.06217 * 17 12 11 19 19 C 1.47156 * 111.00009 * 183.56480 * 10 9 7 20 20 H 1.09001 * 109.62907 * 171.89544 * 19 10 9 21 21 C 1.52998 * 109.62810 * 292.47778 * 19 10 9 22 22 N 1.46901 * 109.47263 * 304.02258 * 21 19 10 23 23 H 0.97006 * 120.00033 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.46927 * 54.68726 * 9 7 2 25 25 H 1.08993 * 109.47217 * 294.69069 * 9 7 2 26 26 H 1.09003 * 109.27352 * 49.38341 * 11 10 9 27 27 H 1.08998 * 109.26863 * 168.85612 * 11 10 9 28 28 H 1.07995 * 119.81612 * 0.07430 * 13 12 11 29 29 H 1.07996 * 120.06808 * 180.33708 * 14 13 12 30 30 H 1.07998 * 120.08895 * 180.11729 * 15 14 13 31 31 H 1.07996 * 119.83454 * 179.97438 * 16 15 14 32 32 H 1.08996 * 109.39166 * 103.42280 * 18 17 12 33 33 H 1.09010 * 109.38703 * 223.11780 * 18 17 12 34 34 H 1.08996 * 109.47283 * 64.02136 * 21 19 10 35 35 H 1.09006 * 109.46891 * 184.02029 * 21 19 10 36 36 H 1.00896 * 111.00078 * 180.02562 * 22 21 19 37 37 H 1.00898 * 110.99642 * 303.95051 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2005 -3.6128 -0.1271 11 6 3.0712 -3.4299 -1.2927 12 6 2.2965 -3.6319 -2.5685 13 6 2.8340 -3.1458 -3.7516 14 6 2.1602 -3.3122 -4.9445 15 6 0.9396 -3.9613 -4.9611 16 6 0.3994 -4.4383 -3.7838 17 6 1.0753 -4.2708 -2.5845 18 6 0.4446 -4.8032 -1.3234 19 6 1.4940 -4.9006 -0.2158 20 1 2.2045 -5.6924 -0.4531 21 6 0.8075 -5.2031 1.1176 22 7 1.8029 -5.1775 2.1977 23 1 -0.4850 0.8401 -0.0004 24 1 0.5552 -2.5169 -0.8384 25 1 0.6973 -2.5989 0.9340 26 1 3.4870 -2.4224 -1.2768 27 1 3.8843 -4.1547 -1.2516 28 1 3.7871 -2.6381 -3.7396 29 1 2.5858 -2.9366 -5.8633 30 1 0.4102 -4.0952 -5.8929 31 1 -0.5542 -4.9450 -3.7967 32 1 -0.3542 -4.1324 -1.0072 33 1 0.0292 -5.7925 -1.5163 34 1 0.0422 -4.4516 1.3110 35 1 0.3453 -6.1893 1.0727 36 1 1.3740 -5.3750 3.0894 37 1 2.5573 -5.8205 2.0094 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721595897.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:50 Heat of formation + Delta-G solvation = 10.774412 kcal Electronic energy + Delta-G solvation = -18371.267441 eV Core-core repulsion = 15726.054786 eV Total energy + Delta-G solvation = -2645.212655 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.33976 -38.46919 -35.43800 -34.50987 -33.38435 -31.85704 -30.27546 -28.89733 -26.07343 -25.69605 -23.81900 -23.01033 -22.14902 -19.85612 -18.50946 -17.24897 -16.85119 -16.62358 -16.50038 -16.02423 -15.79945 -15.30764 -14.93573 -14.79940 -14.37311 -13.99318 -13.83887 -13.49945 -13.28129 -12.88231 -12.79253 -12.67787 -12.39510 -12.32209 -12.12061 -11.93868 -11.80464 -11.39413 -11.02531 -10.54255 -9.59478 -9.36365 -9.27154 -8.76478 -8.14820 -6.21243 0.52987 0.54953 1.39485 1.42672 1.49717 2.42638 2.90579 3.19222 3.34734 3.64854 3.99581 4.02255 4.10929 4.14917 4.26575 4.41659 4.44944 4.56857 4.60597 4.65352 4.75762 4.85426 4.95597 5.01241 5.13138 5.19615 5.26724 5.41826 5.55238 5.62347 5.66246 5.69251 5.82495 6.13617 6.21373 6.44906 6.46857 6.80947 6.85971 6.97374 7.46662 8.96537 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.015441 B = 0.010466 C = 0.007307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.877889 B = 2674.711318 C = 3831.071020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.004 3.996 3 Si 0.958 3.042 4 H -0.269 1.269 5 H -0.285 1.285 6 H -0.269 1.269 7 C -0.518 4.518 8 H 0.060 0.940 9 C 0.216 3.784 10 N -0.507 5.507 11 C 0.093 3.907 12 C -0.112 4.112 13 C -0.132 4.132 14 C -0.130 4.130 15 C -0.132 4.132 16 C -0.132 4.132 17 C -0.094 4.094 18 C -0.106 4.106 19 C 0.083 3.917 20 H 0.086 0.914 21 C 0.083 3.917 22 N -0.842 5.842 23 H 0.260 0.740 24 H -0.025 1.025 25 H -0.002 1.002 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.128 0.872 29 H 0.144 0.856 30 H 0.147 0.853 31 H 0.133 0.867 32 H 0.054 0.946 33 H 0.096 0.904 34 H 0.042 0.958 35 H 0.049 0.951 36 H 0.343 0.657 37 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.833 -11.849 -6.091 13.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.194 4.194 3 Si 0.783 3.217 4 H -0.194 1.194 5 H -0.211 1.211 6 H -0.194 1.194 7 C -0.557 4.557 8 H 0.078 0.922 9 C 0.090 3.910 10 N -0.228 5.228 11 C -0.035 4.035 12 C -0.113 4.113 13 C -0.150 4.150 14 C -0.148 4.148 15 C -0.150 4.150 16 C -0.150 4.150 17 C -0.095 4.095 18 C -0.145 4.145 19 C -0.027 4.027 20 H 0.104 0.896 21 C -0.048 4.048 22 N -0.373 5.373 23 H 0.069 0.931 24 H -0.007 1.007 25 H 0.016 0.984 26 H 0.095 0.905 27 H 0.104 0.896 28 H 0.146 0.854 29 H 0.162 0.838 30 H 0.164 0.836 31 H 0.151 0.849 32 H 0.072 0.928 33 H 0.114 0.886 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.156 0.844 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.093 -10.975 -5.815 12.800 hybrid contribution -0.787 0.261 -0.431 0.934 sum 2.306 -10.715 -6.246 12.615 Atomic orbital electron populations 1.70084 1.07584 1.27420 1.52410 1.25789 0.95614 1.02742 0.95237 0.85605 0.78325 0.78717 0.79020 1.19364 1.21095 1.19400 1.21511 0.93393 0.91607 1.49170 0.92159 1.19251 0.90383 0.88010 0.93341 1.62583 1.21755 1.01663 1.36759 1.21124 0.95267 1.02100 0.85043 1.20673 0.96044 0.97402 0.97216 1.21319 1.01014 1.00150 0.92522 1.21364 0.95774 0.99436 0.98181 1.21350 0.96270 0.98802 0.98528 1.21313 1.00153 1.01320 0.92213 1.19743 0.94700 0.99343 0.95679 1.21027 0.98835 1.01315 0.93298 1.21803 0.94411 0.93037 0.93408 0.89598 1.21620 0.93796 0.98707 0.90722 1.58280 1.13424 1.61403 1.04160 0.93101 1.00693 0.98448 0.90548 0.89639 0.85445 0.83777 0.83563 0.84865 0.92763 0.88580 0.93908 0.93267 0.84373 0.84148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.82 13.29 21.45 0.28 -57.53 16 2 C 0.00 0.22 5.46 84.65 0.46 0.68 16 3 Si 0.96 45.69 29.54 68.60 2.03 47.72 16 4 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 5 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 6 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.52 -30.02 8.20 25.60 0.21 -29.81 16 8 H 0.06 3.43 6.50 -2.91 -0.02 3.41 16 9 C 0.22 11.65 3.86 85.55 0.33 11.98 16 10 N -0.51 -21.97 4.60 -880.50 -4.05 -26.03 16 11 C 0.09 3.76 5.31 85.58 0.45 4.21 16 12 C -0.11 -4.31 5.37 -19.87 -0.11 -4.41 16 13 C -0.13 -4.51 9.65 22.34 0.22 -4.29 16 14 C -0.13 -3.81 10.05 22.22 0.22 -3.59 16 15 C -0.13 -3.75 10.05 22.23 0.22 -3.53 16 16 C -0.13 -4.21 9.66 22.33 0.22 -3.99 16 17 C -0.09 -3.49 5.08 -19.85 -0.10 -3.59 16 18 C -0.11 -3.70 4.46 29.82 0.13 -3.57 16 19 C 0.08 2.90 2.42 44.83 0.11 3.01 16 20 H 0.09 2.68 8.05 -2.39 -0.02 2.66 16 21 C 0.08 2.66 6.01 86.30 0.52 3.18 16 22 N -0.84 -25.48 9.38 -186.72 -1.75 -27.23 16 23 H 0.26 15.29 8.31 -92.70 -0.77 14.52 16 24 H -0.02 -1.44 5.43 -2.38 -0.01 -1.46 16 25 H 0.00 -0.15 6.80 -2.39 -0.02 -0.16 16 26 H 0.08 3.44 5.82 -2.39 -0.01 3.43 16 27 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 28 H 0.13 3.94 8.06 -2.91 -0.02 3.91 16 29 H 0.14 3.27 8.06 -2.91 -0.02 3.25 16 30 H 0.15 3.14 8.06 -2.91 -0.02 3.11 16 31 H 0.13 3.57 8.06 -2.91 -0.02 3.55 16 32 H 0.05 2.23 6.72 -2.39 -0.02 2.22 16 33 H 0.10 2.67 8.14 -2.38 -0.02 2.65 16 34 H 0.04 1.65 6.87 -2.39 -0.02 1.63 16 35 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 36 H 0.34 8.77 9.08 -89.70 -0.81 7.96 16 37 H 0.35 8.89 8.99 -89.70 -0.81 8.08 16 Total: -1.00 -68.66 292.91 -1.14 -69.80 By element: Atomic # 1 Polarization: 27.54 SS G_CDS: -0.54 Total: 27.00 kcal Atomic # 6 Polarization: -36.62 SS G_CDS: 2.89 Total: -33.73 kcal Atomic # 7 Polarization: -105.27 SS G_CDS: -5.52 Total: -110.79 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -68.66 -1.14 -69.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721595897.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.574 kcal (2) G-P(sol) polarization free energy of solvation -68.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds