Wall clock time and date at job start Mon Mar 30 2020 04:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 120.00031 * 2 1 4 4 H 1.48507 * 109.46967 * 239.99938 * 3 2 1 5 5 H 1.48504 * 109.47306 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47133 * 120.00015 * 3 2 1 7 7 C 1.37873 * 119.99784 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99816 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00500 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47416 * 180.02562 * 9 7 2 11 11 C 1.34776 * 119.99778 * 179.97438 * 10 9 7 12 12 O 1.21276 * 120.00219 * 0.02562 * 11 10 9 13 13 C 1.50698 * 119.99775 * 180.02562 * 11 10 9 14 14 H 1.08999 * 110.92778 * 53.63047 * 13 11 10 15 15 N 1.47319 * 110.86264 * 290.00391 * 13 11 10 16 16 C 1.37696 * 114.52907 * 241.58288 * 15 13 11 17 17 Cl 1.73608 * 119.39347 * 180.27004 * 16 15 13 18 18 C 1.31698 * 121.21096 * 0.24719 * 16 15 13 19 19 S 1.77694 * 106.21929 * 0.02562 * 18 16 15 20 20 H 0.96997 * 119.99973 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46569 * 60.00002 * 9 7 2 22 22 H 1.09003 * 109.46932 * 300.00598 * 9 7 2 23 23 H 0.97001 * 120.00147 * 0.02562 * 10 9 7 24 24 H 0.97001 * 122.73719 * 61.85870 * 15 13 11 25 25 H 1.08000 * 126.88988 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 1.7537 -4.8834 0.0000 12 8 0.5614 -5.1050 0.0000 13 6 2.7330 -6.0288 0.0006 14 1 3.4448 -5.9320 0.8204 15 7 3.4320 -6.1221 -1.2929 16 6 3.2231 -7.3018 -1.9717 17 17 3.9931 -7.5486 -3.5080 18 6 2.4504 -8.2464 -1.4767 19 16 1.8546 -7.6344 0.0815 20 1 -0.4850 0.8400 -0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6247 -2.5571 0.8897 23 1 3.1567 -3.4355 -0.0002 24 1 3.9967 -5.4122 -1.6364 25 1 2.2235 -9.2011 -1.9279 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725545332.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:31 Heat of formation + Delta-G solvation = -12.054306 kcal Electronic energy + Delta-G solvation = -13432.626107 eV Core-core repulsion = 10791.932784 eV Total energy + Delta-G solvation = -2640.693323 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 248.013 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.39855 -37.89202 -36.32045 -34.36448 -32.46808 -30.84961 -28.08627 -26.52150 -22.79315 -21.06262 -20.05423 -18.88537 -17.42936 -16.55697 -15.97261 -15.32496 -14.85705 -14.46470 -14.26008 -13.82637 -13.36125 -12.92614 -12.63000 -12.06949 -11.84320 -11.53353 -11.08608 -11.01034 -10.93833 -10.47999 -10.39381 -9.74815 -9.50276 -9.02823 -8.83202 -8.06399 -7.03621 -6.23993 -4.32250 1.11692 1.49185 1.79800 2.44387 2.87264 3.20182 3.25334 3.26641 3.51732 3.76286 4.27789 4.89638 5.08378 5.12249 5.18454 5.62161 6.41717 7.09709 7.15347 7.21169 7.39639 7.52834 7.86594 8.39994 8.62627 8.86308 9.34306 10.85939 Molecular weight = 248.01amu Principal moments of inertia in cm(-1) A = 0.033519 B = 0.005227 C = 0.004731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.137816 B = 5355.441485 C = 5917.012585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.547 4.547 8 H 0.063 0.937 9 C 0.250 3.750 10 N -0.699 5.699 11 C 0.487 3.513 12 O -0.517 6.517 13 C 0.152 3.848 14 H 0.124 0.876 15 N -0.721 5.721 16 C 0.183 3.817 17 Cl -0.043 7.043 18 C -0.240 4.240 19 S -0.071 6.071 20 H 0.268 0.732 21 H 0.029 0.971 22 H 0.030 0.970 23 H 0.390 0.610 24 H 0.422 0.578 25 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.675 -13.524 -2.939 16.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.586 4.586 8 H 0.081 0.919 9 C 0.129 3.871 10 N -0.348 5.348 11 C 0.265 3.735 12 O -0.392 6.392 13 C -0.068 4.068 14 H 0.142 0.858 15 N -0.359 5.359 16 C 0.044 3.956 17 Cl -0.015 7.015 18 C -0.382 4.382 19 S 0.166 5.834 20 H 0.077 0.923 21 H 0.047 0.953 22 H 0.048 0.952 23 H 0.223 0.777 24 H 0.262 0.738 25 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 7.851 -14.026 -2.069 16.206 hybrid contribution 2.006 1.874 -1.287 3.032 sum 9.857 -12.152 -3.356 16.003 Atomic orbital electron populations 1.69960 1.06122 1.27593 1.48376 1.24949 0.94931 0.99488 0.94541 0.86453 0.79415 0.82213 0.78705 1.20057 1.20993 1.20011 1.21143 0.93201 0.90325 1.53899 0.91909 1.19197 0.88188 0.81632 0.98040 1.46427 1.11264 1.05634 1.71511 1.20406 0.89423 0.84447 0.79222 1.90748 1.15590 1.83892 1.48966 1.24411 0.96655 0.96734 0.89025 0.85811 1.44630 1.54068 1.17446 1.19791 1.20226 0.98583 0.89286 0.87519 1.98414 1.80543 1.95709 1.26834 1.24230 1.08433 1.03799 1.01706 1.86558 1.63964 1.10753 1.22156 0.92255 0.95288 0.95173 0.77722 0.73827 0.79582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.55 13.29 55.43 0.74 -24.82 15 2 C 0.07 1.77 5.46 -17.82 -0.10 1.67 15 3 Si 0.91 20.37 29.54 -169.99 -5.02 15.35 15 4 H -0.28 -6.06 7.11 56.52 0.40 -5.66 15 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 15 7 C -0.55 -14.36 9.28 -34.44 -0.32 -14.68 15 8 H 0.06 1.52 7.60 -52.49 -0.40 1.12 15 9 C 0.25 6.40 5.43 -5.19 -0.03 6.37 15 10 N -0.70 -13.85 5.55 -61.47 -0.34 -14.19 15 11 C 0.49 9.39 7.52 -10.99 -0.08 9.31 15 12 O -0.52 -12.25 15.99 5.56 0.09 -12.16 15 13 C 0.15 2.18 4.57 -4.75 -0.02 2.16 15 14 H 0.12 1.42 8.14 -51.93 -0.42 1.00 15 15 N -0.72 -9.09 5.83 -55.24 -0.32 -9.41 15 16 C 0.18 2.29 7.16 -16.79 -0.12 2.17 15 17 Cl -0.04 -0.46 29.07 -51.86 -1.51 -1.97 15 18 C -0.24 -3.03 11.17 28.86 0.32 -2.71 15 19 S -0.07 -1.05 21.99 -107.50 -2.36 -3.41 15 20 H 0.27 7.28 8.31 -40.82 -0.34 6.94 15 21 H 0.03 0.83 8.14 -51.93 -0.42 0.41 15 22 H 0.03 0.86 8.14 -51.93 -0.42 0.43 15 23 H 0.39 6.41 8.32 -40.82 -0.34 6.07 15 24 H 0.42 4.58 8.96 -40.82 -0.37 4.22 15 25 H 0.19 1.88 8.06 -52.49 -0.42 1.46 15 LS Contribution 258.83 15.07 3.90 3.90 Total: -1.00 -30.96 258.83 -7.11 -38.06 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -1.93 Total: 4.35 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: -0.35 Total: 4.29 kcal Atomic # 7 Polarization: -48.49 SS G_CDS: 0.07 Total: -48.41 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.09 Total: -12.16 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: -1.05 SS G_CDS: -2.36 Total: -3.41 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.51 Total: -1.97 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -30.96 -7.11 -38.06 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725545332.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.009 kcal (2) G-P(sol) polarization free energy of solvation -30.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds