Wall clock time and date at job start Mon Mar 30 2020 04:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48491 * 109.47135 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46750 * 300.00384 * 3 2 1 6 6 H 1.48500 * 109.46877 * 59.99874 * 3 2 1 7 7 C 1.37876 * 119.99249 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99176 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00510 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47158 * 180.02562 * 9 7 2 11 11 C 1.34778 * 120.00002 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00144 * 0.02562 * 11 10 9 13 13 C 1.50702 * 119.99877 * 179.97438 * 11 10 9 14 14 H 1.09002 * 110.76326 * 169.29997 * 13 11 10 15 15 N 1.47313 * 110.86429 * 292.81413 * 13 11 10 16 16 C 1.38135 * 114.26537 * 118.45548 * 15 13 11 17 17 Cl 1.73597 * 119.31422 * 179.87639 * 16 15 13 18 18 C 1.31694 * 121.28529 * 359.78217 * 16 15 13 19 19 S 1.77689 * 106.22711 * 0.11996 * 18 16 15 20 20 H 0.97005 * 119.99747 * 359.97438 * 1 2 3 21 21 H 1.08995 * 109.47218 * 60.00074 * 9 7 2 22 22 H 1.09000 * 109.47041 * 299.99805 * 9 7 2 23 23 H 0.97004 * 120.00024 * 359.97438 * 10 9 7 24 24 H 0.97003 * 122.73381 * 298.34110 * 15 13 11 25 25 H 1.08000 * 126.88590 * 180.10748 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2028 -3.6127 -0.0005 11 6 1.7535 -4.8834 0.0000 12 8 0.5611 -5.1050 0.0000 13 6 2.7328 -6.0289 -0.0006 14 1 2.2228 -6.9734 0.1892 15 7 3.4784 -6.0810 -1.2700 16 6 4.8433 -5.9179 -1.1337 17 17 5.8497 -5.9601 -2.5476 18 6 5.3950 -5.7293 0.0471 19 16 4.0651 -5.7490 1.2254 20 1 -0.4850 0.8401 0.0004 21 1 0.6239 -2.5567 -0.8902 22 1 0.6246 -2.5571 0.8897 23 1 3.1565 -3.4355 -0.0009 24 1 3.0459 -6.2200 -2.1271 25 1 6.4453 -5.5907 0.2572 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725545333.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:32 Heat of formation + Delta-G solvation = -15.258495 kcal Electronic energy + Delta-G solvation = -13595.589424 eV Core-core repulsion = 10954.757157 eV Total energy + Delta-G solvation = -2640.832267 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 248.013 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.41977 -37.91417 -36.35878 -34.32674 -32.38961 -30.89790 -28.13755 -26.45923 -22.74822 -21.04560 -20.16306 -18.89965 -17.23087 -16.62202 -15.80442 -15.62673 -14.70150 -14.45448 -14.36268 -13.84352 -13.42407 -12.87793 -12.69321 -12.03243 -11.82641 -11.61130 -11.03734 -10.98700 -10.93629 -10.59081 -10.33991 -9.62459 -9.42580 -9.40017 -8.78607 -8.01050 -7.14059 -6.19665 -4.26497 0.98542 1.39501 1.71879 2.35223 2.85039 3.22882 3.30139 3.33624 3.58564 3.76852 4.32775 4.82572 5.01951 5.17042 5.34190 5.58021 6.37113 7.05515 7.18976 7.26183 7.42686 7.60504 7.90946 8.45875 8.65579 8.90382 9.39774 10.90545 Molecular weight = 248.01amu Principal moments of inertia in cm(-1) A = 0.024254 B = 0.006449 C = 0.005755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.150282 B = 4340.832049 C = 4864.196421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.065 3.935 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.542 4.542 8 H 0.064 0.936 9 C 0.248 3.752 10 N -0.685 5.685 11 C 0.493 3.507 12 O -0.541 6.541 13 C 0.159 3.841 14 H 0.133 0.867 15 N -0.722 5.722 16 C 0.186 3.814 17 Cl -0.038 7.038 18 C -0.236 4.236 19 S -0.105 6.105 20 H 0.266 0.734 21 H 0.029 0.971 22 H 0.031 0.969 23 H 0.396 0.604 24 H 0.424 0.576 25 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.520 -12.082 -2.377 16.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.580 4.580 8 H 0.083 0.917 9 C 0.127 3.873 10 N -0.332 5.332 11 C 0.272 3.728 12 O -0.420 6.420 13 C -0.060 4.060 14 H 0.151 0.849 15 N -0.361 5.361 16 C 0.048 3.952 17 Cl -0.010 7.010 18 C -0.378 4.378 19 S 0.129 5.871 20 H 0.075 0.925 21 H 0.047 0.953 22 H 0.049 0.951 23 H 0.230 0.770 24 H 0.264 0.736 25 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 10.459 -11.945 -1.150 15.919 hybrid contribution 0.854 0.811 -1.808 2.158 sum 11.314 -11.134 -2.959 16.147 Atomic orbital electron populations 1.69984 1.06115 1.27270 1.48948 1.24939 0.94913 0.99473 0.94592 0.86345 0.79926 0.82831 0.77761 1.19529 1.20813 1.20724 1.21226 0.93367 0.90214 1.53198 0.91739 1.19227 0.88213 0.81844 0.97972 1.46454 1.11835 1.05563 1.69376 1.20233 0.88645 0.84670 0.79291 1.90720 1.15733 1.84524 1.50982 1.24489 0.93913 1.02500 0.85148 0.84944 1.44784 1.01836 1.80565 1.08891 1.20429 0.83249 1.02663 0.88840 1.98423 1.65379 1.96993 1.40229 1.24177 1.02568 1.19717 0.91294 1.86826 0.97567 1.91736 1.10947 0.92462 0.95302 0.95078 0.76997 0.73560 0.79303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.86 13.29 55.43 0.74 -25.12 15 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 15 3 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 15 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 15 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 7 C -0.54 -14.66 9.28 -34.44 -0.32 -14.98 15 8 H 0.06 1.66 7.60 -52.48 -0.40 1.26 15 9 C 0.25 6.50 5.43 -5.19 -0.03 6.48 15 10 N -0.68 -14.51 5.38 -61.47 -0.33 -14.84 15 11 C 0.49 9.67 7.15 -10.98 -0.08 9.59 15 12 O -0.54 -12.65 17.10 5.56 0.10 -12.56 15 13 C 0.16 2.30 4.55 -4.75 -0.02 2.28 15 14 H 0.13 1.71 8.14 -51.93 -0.42 1.28 15 15 N -0.72 -8.96 5.87 -55.13 -0.32 -9.29 15 16 C 0.19 2.21 7.17 -16.59 -0.12 2.09 15 17 Cl -0.04 -0.39 29.07 -51.86 -1.51 -1.90 15 18 C -0.24 -2.77 11.16 28.86 0.32 -2.44 15 19 S -0.11 -1.45 21.97 -107.50 -2.36 -3.81 15 20 H 0.27 7.26 8.31 -40.82 -0.34 6.92 15 21 H 0.03 0.83 8.14 -51.93 -0.42 0.41 15 22 H 0.03 0.90 8.14 -51.93 -0.42 0.48 15 23 H 0.40 7.74 7.66 -40.82 -0.31 7.43 15 24 H 0.42 4.70 8.96 -40.82 -0.37 4.34 15 25 H 0.19 1.77 8.06 -52.49 -0.42 1.35 15 LS Contribution 258.74 15.07 3.90 3.90 Total: -1.00 -30.34 258.74 -7.06 -37.40 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -1.90 Total: 5.72 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -0.34 Total: 4.69 kcal Atomic # 7 Polarization: -49.34 SS G_CDS: 0.08 Total: -49.25 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: 0.10 Total: -12.56 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: -1.45 SS G_CDS: -2.36 Total: -3.81 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.51 Total: -1.90 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -30.34 -7.06 -37.40 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725545333.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.145 kcal (2) G-P(sol) polarization free energy of solvation -30.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds