Wall clock time and date at job start Mon Mar 30 2020 04:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48491 * 109.47135 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46750 * 300.00384 * 3 2 1 6 6 H 1.48500 * 109.46877 * 59.99874 * 3 2 1 7 7 C 1.37876 * 119.99249 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99176 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00510 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47158 * 180.02562 * 9 7 2 11 11 C 1.34778 * 120.00002 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00144 * 0.02562 * 11 10 9 13 13 C 1.50702 * 119.99877 * 179.97438 * 11 10 9 14 14 H 1.09002 * 110.76326 * 169.29997 * 13 11 10 15 15 N 1.47313 * 110.86429 * 292.81413 * 13 11 10 16 16 C 1.38135 * 114.26537 * 118.45548 * 15 13 11 17 17 Cl 1.73597 * 119.31422 * 179.87639 * 16 15 13 18 18 C 1.31694 * 121.28529 * 359.78217 * 16 15 13 19 19 S 1.77689 * 106.22711 * 0.11996 * 18 16 15 20 20 H 0.97005 * 119.99747 * 359.97438 * 1 2 3 21 21 H 1.08995 * 109.47218 * 60.00074 * 9 7 2 22 22 H 1.09000 * 109.47041 * 299.99805 * 9 7 2 23 23 H 0.97004 * 120.00024 * 359.97438 * 10 9 7 24 24 H 0.97003 * 122.73381 * 298.34110 * 15 13 11 25 25 H 1.08000 * 126.88590 * 180.10748 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2028 -3.6127 -0.0005 11 6 1.7535 -4.8834 0.0000 12 8 0.5611 -5.1050 0.0000 13 6 2.7328 -6.0289 -0.0006 14 1 2.2228 -6.9734 0.1892 15 7 3.4784 -6.0810 -1.2700 16 6 4.8433 -5.9179 -1.1337 17 17 5.8497 -5.9601 -2.5476 18 6 5.3950 -5.7293 0.0471 19 16 4.0651 -5.7490 1.2254 20 1 -0.4850 0.8401 0.0004 21 1 0.6239 -2.5567 -0.8902 22 1 0.6246 -2.5571 0.8897 23 1 3.1565 -3.4355 -0.0009 24 1 3.0459 -6.2200 -2.1271 25 1 6.4453 -5.5907 0.2572 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725545333.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:32 Heat of formation + Delta-G solvation = -38.029185 kcal Electronic energy + Delta-G solvation = -13596.576836 eV Core-core repulsion = 10954.757157 eV Total energy + Delta-G solvation = -2641.819678 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 248.013 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.94242 -39.06248 -37.33108 -36.26533 -34.39269 -32.01220 -29.78576 -28.04839 -24.72362 -22.27825 -21.55384 -20.20850 -18.86397 -17.80504 -17.60113 -17.26358 -16.44032 -16.05844 -15.41334 -15.13134 -14.84783 -14.31174 -14.05367 -14.02261 -13.57913 -12.93404 -12.76573 -12.54406 -12.24771 -12.01453 -11.63157 -11.48732 -11.09215 -10.84660 -10.59184 -9.93941 -8.31684 -8.20834 -6.46914 -0.09230 0.33487 0.77634 1.22648 1.43428 1.44052 1.57755 1.63547 2.15589 2.36547 2.42226 3.04700 3.47416 3.96420 4.04413 4.73590 5.03427 5.18726 5.35980 5.38932 5.57271 5.80718 6.13279 6.60087 6.68383 7.12508 7.28801 8.81440 Molecular weight = 248.01amu Principal moments of inertia in cm(-1) A = 0.024254 B = 0.006449 C = 0.005755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.150282 B = 4340.832049 C = 4864.196421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.008 3.992 3 Si 0.982 3.018 4 H -0.255 1.255 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.554 4.554 8 H 0.079 0.921 9 C 0.265 3.735 10 N -0.683 5.683 11 C 0.493 3.507 12 O -0.582 6.582 13 C 0.172 3.828 14 H 0.154 0.846 15 N -0.719 5.719 16 C 0.178 3.822 17 Cl -0.020 7.020 18 C -0.228 4.228 19 S -0.117 6.117 20 H 0.269 0.731 21 H -0.006 1.006 22 H -0.006 1.006 23 H 0.406 0.594 24 H 0.430 0.570 25 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.037 -12.027 -2.665 18.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.192 4.192 3 Si 0.805 3.195 4 H -0.178 1.178 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.592 4.592 8 H 0.097 0.903 9 C 0.143 3.857 10 N -0.331 5.331 11 C 0.274 3.726 12 O -0.463 6.463 13 C -0.048 4.048 14 H 0.171 0.829 15 N -0.359 5.359 16 C 0.040 3.960 17 Cl 0.008 6.992 18 C -0.369 4.369 19 S 0.118 5.882 20 H 0.078 0.922 21 H 0.012 0.988 22 H 0.012 0.988 23 H 0.242 0.758 24 H 0.272 0.728 25 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 13.031 -11.929 -1.451 17.726 hybrid contribution 0.086 0.741 -1.734 1.888 sum 13.116 -11.188 -3.185 17.531 Atomic orbital electron populations 1.70129 1.08137 1.28554 1.49874 1.25994 0.95750 1.03679 0.93752 0.85144 0.79092 0.77460 0.77762 1.17828 1.20372 1.20344 1.21564 0.94108 0.90511 1.53037 0.90265 1.18669 0.88505 0.83941 0.94633 1.46177 1.11464 1.05313 1.70189 1.21162 0.89110 0.85202 0.77144 1.90694 1.18156 1.85248 1.52209 1.24132 0.93564 1.00323 0.86746 0.82899 1.44748 1.02116 1.80605 1.08405 1.20511 0.83026 1.02690 0.89730 1.98435 1.64627 1.96915 1.39176 1.24530 1.02990 1.19117 0.90242 1.86957 0.98131 1.91856 1.11249 0.92171 0.98779 0.98762 0.75773 0.72830 0.76792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.32 13.29 21.45 0.28 -55.04 15 2 C 0.01 0.45 5.46 84.65 0.46 0.91 15 3 Si 0.98 42.19 29.54 68.60 2.03 44.22 15 4 H -0.25 -10.20 7.11 99.48 0.71 -9.49 15 5 H -0.28 -11.70 7.11 99.48 0.71 -11.00 15 6 H -0.28 -11.72 7.11 99.48 0.71 -11.01 15 7 C -0.55 -30.12 9.28 25.60 0.24 -29.89 15 8 H 0.08 3.98 7.60 -2.91 -0.02 3.96 15 9 C 0.26 14.42 5.43 85.63 0.46 14.88 15 10 N -0.68 -29.23 5.38 -466.79 -2.51 -31.75 15 11 C 0.49 19.47 7.15 87.66 0.63 20.10 15 12 O -0.58 -28.03 17.10 -3.03 -0.05 -28.08 15 13 C 0.17 4.77 4.55 85.48 0.39 5.16 15 14 H 0.15 3.69 8.14 -2.39 -0.02 3.67 15 15 N -0.72 -16.52 5.87 -328.35 -1.93 -18.45 15 16 C 0.18 3.76 7.17 83.02 0.59 4.35 15 17 Cl -0.02 -0.35 29.07 -2.72 -0.08 -0.43 15 18 C -0.23 -4.68 11.16 67.14 0.75 -3.93 15 19 S -0.12 -2.99 21.97 -56.49 -1.24 -4.23 15 20 H 0.27 14.94 8.31 -92.70 -0.77 14.17 15 21 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 15 22 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 15 23 H 0.41 15.58 7.66 -92.71 -0.71 14.87 15 24 H 0.43 8.83 8.96 -92.71 -0.83 8.00 15 25 H 0.22 3.22 8.06 -2.91 -0.02 3.19 15 Total: -1.00 -66.27 258.74 -0.27 -66.54 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -0.29 Total: 15.64 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: 3.52 Total: 11.58 kcal Atomic # 7 Polarization: -101.08 SS G_CDS: -4.15 Total: -105.23 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: -0.05 Total: -28.08 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Atomic # 16 Polarization: -2.99 SS G_CDS: -1.24 Total: -4.23 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -0.08 Total: -0.43 kcal Total: -66.27 -0.27 -66.54 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725545333.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.509 kcal (2) G-P(sol) polarization free energy of solvation -66.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds