Wall clock time and date at job start Mon Mar 30 2020 04:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00049 * 2 1 4 4 H 1.48506 * 109.47050 * 270.00399 * 3 2 1 5 5 H 1.48500 * 109.47345 * 30.00065 * 3 2 1 6 6 H 1.48498 * 109.47548 * 150.00543 * 3 2 1 7 7 C 1.37886 * 119.99999 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99853 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99789 * 179.97438 * 7 2 1 10 10 N 1.46498 * 109.46769 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99828 * 179.72341 * 10 9 7 12 12 O 1.21283 * 120.00222 * 0.28168 * 11 10 9 13 13 C 1.50703 * 120.00290 * 180.27728 * 11 10 9 14 14 C 1.53722 * 109.15210 * 78.51657 * 13 11 10 15 15 S 1.82224 * 103.14979 * 120.44835 * 14 13 11 16 16 C 1.76778 * 95.61581 * 0.02562 * 15 14 13 17 17 Cl 1.73594 * 124.98064 * 180.02562 * 16 15 14 18 18 N 1.27442 * 109.98854 * 359.94701 * 16 15 14 19 19 H 0.97000 * 119.99789 * 359.97438 * 1 2 3 20 20 H 1.09004 * 109.47210 * 60.00161 * 9 7 2 21 21 H 1.08994 * 109.47121 * 300.00131 * 9 7 2 22 22 H 0.97001 * 120.00384 * 0.02562 * 10 9 7 23 23 H 1.08999 * 109.13439 * 319.30548 * 13 11 10 24 24 H 1.09002 * 110.68177 * 238.86518 * 14 13 11 25 25 H 1.09004 * 110.67613 * 1.86182 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 7 3.9998 -2.5753 -0.0010 11 6 5.3249 -2.8216 -0.0071 12 8 6.1131 -1.8997 -0.0075 13 6 5.8273 -4.2424 -0.0133 14 6 5.7171 -4.8101 -1.4376 15 16 7.4392 -5.2446 -1.8451 16 6 8.1205 -4.7174 -0.3014 17 17 9.8010 -4.8025 0.1257 18 7 7.1967 -4.2644 0.4505 19 1 -0.4850 0.8401 0.0004 20 1 3.8752 -0.6804 0.8889 21 1 3.8745 -0.6800 -0.8911 22 1 3.3695 -3.3126 -0.0010 23 1 5.2130 -4.8415 0.6589 24 1 5.0829 -5.6965 -1.4507 25 1 5.3350 -4.0548 -2.1244 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725560444.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:33 Heat of formation + Delta-G solvation = -13.579271 kcal Electronic energy + Delta-G solvation = -13449.130535 eV Core-core repulsion = 10808.371084 eV Total energy + Delta-G solvation = -2640.759451 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 248.013 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.88373 -37.67618 -36.78835 -34.50979 -32.57565 -31.28565 -28.09202 -25.81474 -22.91874 -21.42434 -20.10946 -18.47690 -17.72596 -16.42866 -16.05380 -15.50609 -14.88402 -14.42541 -14.10853 -13.79737 -13.43001 -13.29761 -12.77620 -12.45378 -12.28369 -11.62496 -11.41896 -11.12519 -10.88776 -10.83535 -10.05594 -9.78415 -9.61667 -9.51006 -8.88107 -8.37568 -8.22991 -6.29904 -4.33417 0.47453 1.23858 1.53105 1.66090 2.80333 3.21002 3.28138 3.36296 3.58116 4.04722 4.25965 4.38267 4.60019 4.99519 5.05453 5.13836 5.20089 6.63854 6.85848 6.93436 6.99005 7.24150 7.94667 8.31995 8.56725 8.70611 9.29038 10.81726 Molecular weight = 248.01amu Principal moments of inertia in cm(-1) A = 0.046971 B = 0.004966 C = 0.004693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.973424 B = 5636.478850 C = 5964.634066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.080 3.920 3 Si 0.876 3.124 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.547 4.547 8 H 0.081 0.919 9 C 0.221 3.779 10 N -0.697 5.697 11 C 0.512 3.488 12 O -0.530 6.530 13 C 0.057 3.943 14 C -0.112 4.112 15 S -0.144 6.144 16 C 0.239 3.761 17 Cl 0.033 6.967 18 N -0.475 5.475 19 H 0.269 0.731 20 H 0.028 0.972 21 H 0.023 0.977 22 H 0.399 0.601 23 H 0.140 0.860 24 H 0.128 0.872 25 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.365 -12.449 -2.385 18.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.125 4.125 3 Si 0.702 3.298 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.585 4.585 8 H 0.099 0.901 9 C 0.100 3.900 10 N -0.346 5.346 11 C 0.294 3.706 12 O -0.407 6.407 13 C -0.059 4.059 14 C -0.263 4.263 15 S 0.081 5.919 16 C -0.088 4.088 17 Cl 0.060 6.940 18 N -0.190 5.190 19 H 0.079 0.921 20 H 0.046 0.954 21 H 0.041 0.959 22 H 0.233 0.767 23 H 0.157 0.843 24 H 0.146 0.854 25 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 14.163 -11.726 -2.469 18.552 hybrid contribution -0.512 0.769 0.428 1.018 sum 13.651 -10.957 -2.041 17.623 Atomic orbital electron populations 1.69868 1.06205 1.27578 1.48963 1.24781 0.94799 0.99182 0.93723 0.86831 0.80601 0.83236 0.79127 1.19771 1.20756 1.18501 1.21034 0.88217 0.95330 1.53899 0.90111 1.19576 0.95467 0.77880 0.97101 1.46138 1.04762 1.11620 1.72045 1.19729 0.83758 0.88604 0.78535 1.90717 1.55401 1.45019 1.49546 1.22444 0.89618 0.98717 0.95105 1.25015 0.95894 1.06570 0.98797 1.86810 1.05131 1.78294 1.21700 1.27510 0.92019 0.96908 0.92348 1.98452 1.06616 1.96226 1.92658 1.69414 0.99840 1.15600 1.34140 0.92125 0.95380 0.95907 0.76734 0.84312 0.85414 0.85891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.75 13.96 55.43 0.77 -24.98 15 2 C 0.08 2.19 5.47 -17.82 -0.10 2.09 15 3 Si 0.88 20.98 27.47 -169.99 -4.67 16.32 15 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 15 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 6 H -0.26 -6.24 6.54 56.52 0.37 -5.87 15 7 C -0.55 -14.42 9.83 -34.44 -0.34 -14.76 15 8 H 0.08 2.20 7.84 -52.49 -0.41 1.78 15 9 C 0.22 5.23 4.50 -5.19 -0.02 5.20 15 10 N -0.70 -13.11 5.55 -61.47 -0.34 -13.46 15 11 C 0.51 9.44 6.78 -10.98 -0.07 9.37 15 12 O -0.53 -12.18 16.54 5.55 0.09 -12.09 15 13 C 0.06 0.78 3.85 -69.72 -0.27 0.52 15 14 C -0.11 -1.21 7.09 37.53 0.27 -0.94 15 15 S -0.14 -1.69 23.28 -107.50 -2.50 -4.19 15 16 C 0.24 3.23 8.31 50.94 0.42 3.66 15 17 Cl 0.03 0.38 29.33 -51.86 -1.52 -1.14 15 18 N -0.47 -7.31 9.94 -54.18 -0.54 -7.85 15 19 H 0.27 7.29 8.31 -40.82 -0.34 6.95 15 20 H 0.03 0.71 7.20 -51.93 -0.37 0.34 15 21 H 0.02 0.56 7.57 -51.93 -0.39 0.17 15 22 H 0.40 6.28 8.32 -40.82 -0.34 5.94 15 23 H 0.14 1.50 8.14 -51.93 -0.42 1.07 15 24 H 0.13 0.94 8.14 -51.93 -0.42 0.52 15 25 H 0.12 1.40 7.66 -51.93 -0.40 1.01 15 LS Contribution 255.82 15.07 3.86 3.86 Total: -1.00 -31.87 255.82 -6.89 -38.76 By element: Atomic # 1 Polarization: 1.57 SS G_CDS: -1.93 Total: -0.35 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: -0.11 Total: 5.14 kcal Atomic # 7 Polarization: -46.18 SS G_CDS: -0.11 Total: -46.29 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: 0.09 Total: -12.09 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.67 Total: 16.32 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.50 Total: -4.19 kcal Atomic # 17 Polarization: 0.38 SS G_CDS: -1.52 Total: -1.14 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -31.87 -6.89 -38.76 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725560444.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.184 kcal (2) G-P(sol) polarization free energy of solvation -31.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds