Wall clock time and date at job start Mon Mar 30 2020 04:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00049 * 2 1 4 4 H 1.48506 * 109.47050 * 270.00399 * 3 2 1 5 5 H 1.48500 * 109.47345 * 30.00065 * 3 2 1 6 6 H 1.48498 * 109.47548 * 150.00543 * 3 2 1 7 7 C 1.37886 * 119.99999 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99853 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99789 * 179.97438 * 7 2 1 10 10 N 1.46498 * 109.46769 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99828 * 179.72341 * 10 9 7 12 12 O 1.21283 * 120.00222 * 0.28168 * 11 10 9 13 13 C 1.50703 * 120.00290 * 180.27728 * 11 10 9 14 14 C 1.53722 * 109.15210 * 78.51657 * 13 11 10 15 15 S 1.82224 * 103.14979 * 120.44835 * 14 13 11 16 16 C 1.76778 * 95.61581 * 0.02562 * 15 14 13 17 17 Cl 1.73594 * 124.98064 * 180.02562 * 16 15 14 18 18 N 1.27442 * 109.98854 * 359.94701 * 16 15 14 19 19 H 0.97000 * 119.99789 * 359.97438 * 1 2 3 20 20 H 1.09004 * 109.47210 * 60.00161 * 9 7 2 21 21 H 1.08994 * 109.47121 * 300.00131 * 9 7 2 22 22 H 0.97001 * 120.00384 * 0.02562 * 10 9 7 23 23 H 1.08999 * 109.13439 * 319.30548 * 13 11 10 24 24 H 1.09002 * 110.68177 * 238.86518 * 14 13 11 25 25 H 1.09004 * 110.67613 * 1.86182 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 7 3.9998 -2.5753 -0.0010 11 6 5.3249 -2.8216 -0.0071 12 8 6.1131 -1.8997 -0.0075 13 6 5.8273 -4.2424 -0.0133 14 6 5.7171 -4.8101 -1.4376 15 16 7.4392 -5.2446 -1.8451 16 6 8.1205 -4.7174 -0.3014 17 17 9.8010 -4.8025 0.1257 18 7 7.1967 -4.2644 0.4505 19 1 -0.4850 0.8401 0.0004 20 1 3.8752 -0.6804 0.8889 21 1 3.8745 -0.6800 -0.8911 22 1 3.3695 -3.3126 -0.0010 23 1 5.2130 -4.8415 0.6589 24 1 5.0829 -5.6965 -1.4507 25 1 5.3350 -4.0548 -2.1244 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725560444.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:33 Heat of formation + Delta-G solvation = -38.773462 kcal Electronic energy + Delta-G solvation = -13450.223037 eV Core-core repulsion = 10808.371084 eV Total energy + Delta-G solvation = -2641.851953 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 248.013 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.25799 -38.80359 -37.85581 -36.27086 -34.52169 -32.45402 -29.88600 -26.91823 -24.56930 -22.87244 -21.51425 -19.69796 -19.14193 -18.14893 -17.28502 -17.00336 -16.21101 -16.14618 -15.53431 -15.04411 -14.65708 -14.49253 -14.34899 -13.99708 -13.85373 -13.10543 -12.75200 -12.56378 -12.40383 -11.97386 -11.89346 -11.68014 -11.01059 -10.93950 -10.77583 -10.09066 -9.17610 -8.41628 -6.48620 -0.47825 0.18115 0.56159 0.73538 1.30734 1.34644 1.41792 1.46048 2.19826 2.26506 2.93611 3.02596 3.36013 3.60414 3.82043 4.24542 4.35706 4.72788 4.96836 5.21371 5.35317 5.84977 6.04568 6.50876 6.66525 7.08597 7.24171 8.72646 Molecular weight = 248.01amu Principal moments of inertia in cm(-1) A = 0.046971 B = 0.004966 C = 0.004693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.973424 B = 5636.478850 C = 5964.634066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.030 3.970 3 Si 0.932 3.068 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.263 1.263 7 C -0.545 4.545 8 H 0.066 0.934 9 C 0.232 3.768 10 N -0.691 5.691 11 C 0.513 3.487 12 O -0.579 6.579 13 C 0.067 3.933 14 C -0.109 4.109 15 S -0.127 6.127 16 C 0.236 3.764 17 Cl 0.044 6.956 18 N -0.514 5.514 19 H 0.273 0.727 20 H 0.012 0.988 21 H 0.015 0.985 22 H 0.415 0.585 23 H 0.172 0.828 24 H 0.172 0.828 25 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.075 -13.484 -2.848 19.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.171 4.171 3 Si 0.756 3.244 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.188 1.188 7 C -0.583 4.583 8 H 0.084 0.916 9 C 0.109 3.891 10 N -0.341 5.341 11 C 0.297 3.703 12 O -0.459 6.459 13 C -0.049 4.049 14 C -0.260 4.260 15 S 0.098 5.902 16 C -0.090 4.090 17 Cl 0.072 6.928 18 N -0.231 5.231 19 H 0.082 0.918 20 H 0.030 0.970 21 H 0.033 0.967 22 H 0.252 0.748 23 H 0.189 0.811 24 H 0.189 0.811 25 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 14.872 -12.807 -2.946 19.847 hybrid contribution -0.694 1.012 0.547 1.343 sum 14.179 -11.795 -2.399 18.599 Atomic orbital electron populations 1.69963 1.07572 1.28604 1.50513 1.25531 0.95476 1.02443 0.93673 0.85938 0.79227 0.79770 0.79444 1.18948 1.19932 1.18757 1.21242 0.89581 0.94770 1.52679 0.91581 1.19156 0.93629 0.80456 0.95893 1.45890 1.05743 1.10309 1.72156 1.20513 0.82737 0.90475 0.76564 1.90689 1.56468 1.47276 1.51478 1.22394 0.89507 0.95289 0.97682 1.25174 0.96037 1.08167 0.96629 1.86793 1.05591 1.77376 1.20434 1.27836 0.92419 0.95818 0.92918 1.98455 1.05583 1.96065 1.92699 1.69434 1.00657 1.17458 1.35562 0.91817 0.97029 0.96712 0.74820 0.81130 0.81052 0.86383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.89 13.96 21.45 0.30 -53.59 15 2 C 0.03 1.62 5.47 84.66 0.46 2.08 15 3 Si 0.93 43.11 27.47 68.60 1.88 44.99 15 4 H -0.26 -11.84 7.11 99.48 0.71 -11.13 15 5 H -0.27 -12.25 7.11 99.48 0.71 -11.54 15 6 H -0.26 -12.19 6.54 99.48 0.65 -11.54 15 7 C -0.54 -28.66 9.83 25.60 0.25 -28.41 15 8 H 0.07 3.59 7.84 -2.91 -0.02 3.57 15 9 C 0.23 10.87 4.50 85.63 0.38 11.25 15 10 N -0.69 -25.21 5.55 -466.79 -2.59 -27.80 15 11 C 0.51 18.28 6.78 87.66 0.59 18.87 15 12 O -0.58 -26.49 16.54 -3.04 -0.05 -26.54 15 13 C 0.07 1.66 3.85 44.84 0.17 1.84 15 14 C -0.11 -2.02 7.09 72.23 0.51 -1.50 15 15 S -0.13 -2.66 23.28 -56.49 -1.32 -3.97 15 16 C 0.24 5.97 8.31 130.88 1.09 7.06 15 17 Cl 0.04 0.96 29.33 -2.72 -0.08 0.88 15 18 N -0.51 -14.98 9.94 -324.38 -3.22 -18.20 15 19 H 0.27 14.81 8.31 -92.71 -0.77 14.04 15 20 H 0.01 0.59 7.20 -2.38 -0.02 0.58 15 21 H 0.01 0.73 7.57 -2.39 -0.02 0.71 15 22 H 0.41 12.34 8.32 -92.71 -0.77 11.57 15 23 H 0.17 3.08 8.14 -2.39 -0.02 3.06 15 24 H 0.17 1.70 8.14 -2.39 -0.02 1.68 15 25 H 0.12 2.37 7.66 -2.39 -0.02 2.35 15 Total: -1.00 -68.48 255.82 -1.20 -69.69 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: 0.41 Total: 3.34 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: 3.47 Total: 11.19 kcal Atomic # 7 Polarization: -94.07 SS G_CDS: -5.51 Total: -99.59 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -0.05 Total: -26.54 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 1.88 Total: 44.99 kcal Atomic # 16 Polarization: -2.66 SS G_CDS: -1.32 Total: -3.97 kcal Atomic # 17 Polarization: 0.96 SS G_CDS: -0.08 Total: 0.88 kcal Total: -68.48 -1.20 -69.69 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725560444.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.913 kcal (2) G-P(sol) polarization free energy of solvation -68.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds