Wall clock time and date at job start Mon Mar 30 2020 04:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.31118 * 121.44083 * 2 1 4 4 C 1.46870 * 121.43881 * 359.97438 * 3 2 1 5 5 O 1.21578 * 120.00169 * 354.44971 * 4 3 2 6 6 O 1.34809 * 120.00275 * 174.16878 * 4 3 2 7 7 C 1.34830 * 117.00549 * 179.97438 * 6 4 3 8 8 H 1.08005 * 119.99788 * 0.02562 * 7 6 4 9 9 C 1.38828 * 120.00569 * 179.97438 * 7 6 4 10 10 N 1.31409 * 119.99516 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 120.00412 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.46929 * 60.00384 * 11 9 7 13 13 H 1.48504 * 109.47490 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47305 * 300.00368 * 11 9 7 15 15 C 1.51381 * 117.12013 * 180.24768 * 3 2 1 16 16 Cl 1.80304 * 110.75910 * 101.59074 * 15 3 2 17 17 S 1.83936 * 102.64185 * 343.18253 * 15 3 2 18 18 C 1.51381 * 121.44294 * 179.97438 * 2 1 3 19 19 H 1.08998 * 109.47342 * 64.72150 * 1 2 3 20 20 H 1.08994 * 109.47167 * 184.72436 * 1 2 3 21 21 H 1.09002 * 109.47112 * 304.72801 * 1 2 3 22 22 H 0.97004 * 119.99676 * 179.97438 * 10 9 7 23 23 H 1.09000 * 110.75949 * 224.97125 * 15 3 2 24 24 H 1.09002 * 110.75698 * 314.77834 * 18 2 1 25 25 H 1.09004 * 110.76068 * 77.97551 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1909 1.1187 0.0000 4 6 1.5214 2.4259 -0.0006 5 8 0.3115 2.4892 -0.1029 6 8 2.2477 3.5553 0.1181 7 6 1.5716 4.7218 0.1098 8 1 0.4960 4.7218 0.0117 9 6 2.2577 5.9228 0.2286 10 7 3.5663 5.9228 0.3486 11 14 1.3208 7.5388 0.2179 12 1 0.3598 7.5613 1.3499 13 1 2.2770 8.6664 0.3574 14 1 0.5807 7.6735 -1.0625 15 6 3.7004 1.0046 -0.0058 16 17 4.3571 1.2980 -1.6592 17 16 3.9743 -0.7400 0.5085 18 6 2.2966 -1.2915 0.0006 19 1 -0.3634 0.4388 -0.9292 20 1 -0.3633 -1.0241 0.0846 21 1 -0.3633 0.5855 0.8446 22 1 4.0457 6.7620 0.4312 23 1 4.1426 1.6929 0.7144 24 1 1.8856 -1.9953 0.7244 25 1 2.3170 -1.7324 -0.9961 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725564344.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:07 Heat of formation + Delta-G solvation = -89.420047 kcal Electronic energy + Delta-G solvation = -13979.834140 eV Core-core repulsion = 11303.493236 eV Total energy + Delta-G solvation = -2676.340905 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 248.006 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.26289 -38.65333 -37.19363 -36.50130 -34.33332 -31.49178 -29.27850 -27.63778 -25.99687 -23.35353 -19.89444 -19.76333 -18.19256 -17.92754 -17.10091 -16.60940 -16.15952 -15.99445 -15.14680 -14.98815 -14.51302 -14.07451 -13.78686 -13.59059 -13.53203 -13.18665 -13.07955 -12.36487 -12.18468 -12.09414 -12.06166 -11.65582 -11.31380 -10.88633 -10.71640 -10.39284 -9.05518 -8.55136 -6.32006 -0.16886 0.15498 0.79329 1.09735 1.33831 1.43113 1.49810 2.08161 2.08922 2.64082 2.99492 3.04880 3.43799 3.84407 4.19268 4.25583 4.40386 4.59400 4.75234 4.75838 5.12256 5.21586 5.37726 5.80004 6.57915 6.88988 7.71822 8.64706 Molecular weight = 248.01amu Principal moments of inertia in cm(-1) A = 0.030641 B = 0.007754 C = 0.006649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.586453 B = 3610.007800 C = 4210.154807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.007 4.007 3 C -0.196 4.196 4 C 0.443 3.557 5 O -0.562 6.562 6 O -0.230 6.230 7 C -0.417 4.417 8 H 0.086 0.914 9 C -0.002 4.002 10 N -0.896 5.896 11 Si 1.017 2.983 12 H -0.259 1.259 13 H -0.262 1.262 14 H -0.262 1.262 15 C 0.087 3.913 16 Cl -0.158 7.158 17 S -0.217 6.217 18 C -0.040 4.040 19 H 0.073 0.927 20 H 0.111 0.889 21 H 0.069 0.931 22 H 0.279 0.721 23 H 0.127 0.873 24 H 0.169 0.831 25 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.095 -13.424 -0.168 13.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.009 4.009 3 C -0.199 4.199 4 C 0.292 3.708 5 O -0.462 6.462 6 O -0.138 6.138 7 C -0.493 4.493 8 H 0.103 0.897 9 C -0.203 4.203 10 N -0.533 5.533 11 Si 0.835 3.165 12 H -0.184 1.184 13 H -0.186 1.186 14 H -0.187 1.187 15 C -0.068 4.068 16 Cl -0.132 7.132 17 S 0.012 5.988 18 C -0.187 4.187 19 H 0.091 0.909 20 H 0.130 0.870 21 H 0.088 0.912 22 H 0.088 0.912 23 H 0.145 0.855 24 H 0.186 0.814 25 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.118 -13.843 0.226 13.890 hybrid contribution -0.897 1.780 -0.658 2.099 sum -2.015 -12.063 -0.432 12.238 Atomic orbital electron populations 1.20879 0.87121 1.04276 1.03432 1.22644 0.98959 0.92195 0.87125 1.20268 0.93102 0.92009 1.14554 1.20935 0.85781 0.85835 0.78284 1.90616 1.15633 1.88008 1.51906 1.83949 1.40127 1.14038 1.75677 1.21429 0.92750 0.81109 1.53991 0.89673 1.26539 0.96855 1.02271 0.94650 1.70068 1.08157 1.29513 1.45536 0.84698 0.77627 0.74337 0.79808 1.18375 1.18587 1.18653 1.25042 0.94097 0.98994 0.88646 1.98747 1.87445 1.97068 1.29951 1.88012 1.24187 1.05974 1.80675 1.23632 0.89224 0.96513 1.09307 0.90852 0.87027 0.91222 0.91181 0.85481 0.81391 0.83354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.57 8.45 71.23 0.60 -1.97 15 2 C -0.01 -0.18 6.01 -16.39 -0.10 -0.28 15 3 C -0.20 -7.55 5.35 -17.54 -0.09 -7.65 15 4 C 0.44 22.41 7.79 70.08 0.55 22.95 15 5 O -0.56 -29.35 12.79 19.58 0.25 -29.10 15 6 O -0.23 -13.58 9.41 10.80 0.10 -13.48 15 7 C -0.42 -25.19 9.65 67.96 0.66 -24.53 15 8 H 0.09 5.15 6.86 -2.91 -0.02 5.13 15 9 C 0.00 -0.12 5.50 84.90 0.47 0.35 15 10 N -0.90 -53.14 13.67 21.64 0.30 -52.84 15 11 Si 1.02 43.34 29.55 68.60 2.03 45.37 15 12 H -0.26 -10.56 7.11 99.48 0.71 -9.85 15 13 H -0.26 -10.37 7.11 99.48 0.71 -9.66 15 14 H -0.26 -10.78 7.11 99.48 0.71 -10.07 15 15 C 0.09 3.17 4.03 71.45 0.29 3.46 15 16 Cl -0.16 -6.01 28.80 -2.72 -0.08 -6.09 15 17 S -0.22 -5.81 23.12 -56.49 -1.31 -7.11 15 18 C -0.04 -0.76 7.24 71.45 0.52 -0.24 15 19 H 0.07 2.19 7.52 -2.39 -0.02 2.17 15 20 H 0.11 1.70 8.05 -2.39 -0.02 1.68 15 21 H 0.07 2.15 7.24 -2.39 -0.02 2.14 15 22 H 0.28 15.07 8.31 -92.71 -0.77 14.30 15 23 H 0.13 5.17 8.14 -2.39 -0.02 5.15 15 24 H 0.17 1.85 8.14 -2.39 -0.02 1.83 15 25 H 0.15 2.12 8.14 -2.39 -0.02 2.10 15 Total: -1.00 -71.64 255.10 5.39 -66.24 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: 1.22 Total: 4.91 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: 2.88 Total: -7.91 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: 0.30 Total: -52.84 kcal Atomic # 8 Polarization: -42.93 SS G_CDS: 0.35 Total: -42.57 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 16 Polarization: -5.81 SS G_CDS: -1.31 Total: -7.11 kcal Atomic # 17 Polarization: -6.01 SS G_CDS: -0.08 Total: -6.09 kcal Total: -71.64 5.39 -66.24 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725564344.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.176 kcal (2) G-P(sol) polarization free energy of solvation -71.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds