Wall clock time and date at job start Mon Mar 30 2020 04:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99860 * 2 1 4 4 H 1.48497 * 109.46946 * 269.99614 * 3 2 1 5 5 H 1.48498 * 109.47224 * 29.99706 * 3 2 1 6 6 H 1.48505 * 109.46947 * 149.99920 * 3 2 1 7 7 C 1.37876 * 120.00128 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99888 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00097 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47046 * 180.02562 * 9 7 2 11 11 C 1.34782 * 119.99607 * 180.02562 * 10 9 7 12 12 O 1.21281 * 120.00195 * 0.02562 * 11 10 9 13 13 C 1.50699 * 119.99583 * 180.02562 * 11 10 9 14 14 H 1.08999 * 110.76349 * 53.49811 * 13 11 10 15 15 N 1.47311 * 110.85895 * 289.99618 * 13 11 10 16 16 C 1.38013 * 114.49317 * 241.82856 * 15 13 11 17 17 C 1.31693 * 121.13470 * 359.97306 * 16 15 13 18 18 Cl 1.73599 * 126.86698 * 179.97438 * 17 16 15 19 19 S 1.77672 * 106.26107 * 0.25295 * 17 16 15 20 20 H 0.97002 * 119.99930 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.46818 * 60.00051 * 9 7 2 22 22 H 1.08997 * 109.47024 * 300.00236 * 9 7 2 23 23 H 0.96999 * 120.00388 * 0.02562 * 10 9 7 24 24 H 0.97006 * 122.75165 * 61.85960 * 15 13 11 25 25 H 1.08003 * 119.43371 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 1.7539 -4.8834 -0.0011 12 8 0.5615 -5.1050 -0.0020 13 6 2.7332 -6.0287 -0.0005 14 1 3.4445 -5.9285 0.8194 15 7 3.4328 -6.1213 -1.2935 16 6 3.2192 -7.3014 -1.9765 17 6 2.4464 -8.2451 -1.4801 18 17 2.0758 -9.7775 -2.2069 19 16 1.8523 -7.6331 0.0785 20 1 -0.4850 0.8401 -0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6248 -2.5571 0.8896 23 1 3.1568 -3.4354 -0.0002 24 1 3.9977 -5.4112 -1.6366 25 1 3.6946 -7.4539 -2.9342 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725568530.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:38 Heat of formation + Delta-G solvation = -34.471346 kcal Electronic energy + Delta-G solvation = -13348.499053 eV Core-core repulsion = 10706.833654 eV Total energy + Delta-G solvation = -2641.665399 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 248.013 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.85156 -38.71280 -37.49840 -36.23720 -34.40840 -31.83377 -29.55209 -27.96579 -24.72773 -22.28814 -21.48610 -20.04646 -18.94062 -17.83590 -17.56192 -17.08250 -16.16938 -16.07901 -15.70820 -15.15729 -14.60002 -14.11121 -14.09030 -13.88216 -13.65203 -12.95040 -12.72502 -12.45435 -12.25173 -12.08995 -11.50627 -11.34821 -11.00485 -10.82420 -10.07190 -9.93277 -8.30725 -8.11119 -6.47084 -0.00214 0.88258 1.02016 1.22427 1.43375 1.44221 1.46090 1.57035 2.20671 2.38388 2.43876 3.05443 3.70295 3.89435 4.29166 4.39072 5.07181 5.20485 5.40012 5.47334 5.60887 5.81312 6.40797 6.61796 6.73791 7.19321 7.34261 8.81849 Molecular weight = 248.01amu Principal moments of inertia in cm(-1) A = 0.059348 B = 0.004466 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.683846 B = 6268.409375 C = 6431.660209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.984 3.016 4 H -0.271 1.271 5 H -0.287 1.287 6 H -0.253 1.253 7 C -0.554 4.554 8 H 0.088 0.912 9 C 0.267 3.733 10 N -0.690 5.690 11 C 0.485 3.515 12 O -0.570 6.570 13 C 0.165 3.835 14 H 0.162 0.838 15 N -0.702 5.702 16 C 0.143 3.857 17 C -0.215 4.215 18 Cl 0.003 6.997 19 S -0.126 6.126 20 H 0.268 0.732 21 H -0.011 1.011 22 H -0.010 1.010 23 H 0.411 0.589 24 H 0.439 0.561 25 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.733 -13.359 -3.867 18.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.807 3.193 4 H -0.197 1.197 5 H -0.213 1.213 6 H -0.177 1.177 7 C -0.592 4.592 8 H 0.106 0.894 9 C 0.144 3.856 10 N -0.340 5.340 11 C 0.265 3.735 12 O -0.448 6.448 13 C -0.056 4.056 14 H 0.179 0.821 15 N -0.338 5.338 16 C 0.010 3.990 17 C -0.364 4.364 18 Cl 0.031 6.969 19 S 0.109 5.891 20 H 0.077 0.923 21 H 0.007 0.993 22 H 0.008 0.992 23 H 0.248 0.752 24 H 0.282 0.718 25 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 10.899 -13.989 -2.939 17.976 hybrid contribution 0.873 1.548 -1.019 2.049 sum 11.772 -12.441 -3.958 17.579 Atomic orbital electron populations 1.70139 1.08332 1.28589 1.49898 1.26064 0.95728 1.03942 0.93898 0.85162 0.78542 0.77000 0.78549 1.19665 1.21270 1.17707 1.21597 0.94421 0.90272 1.52903 0.89387 1.18604 0.88630 0.84073 0.94318 1.46062 1.11418 1.04768 1.71783 1.21389 0.89796 0.85174 0.77155 1.90733 1.18511 1.84822 1.50701 1.24287 0.95572 0.92675 0.93046 0.82123 1.44735 1.52136 1.18657 1.18305 1.20839 0.95567 0.84614 0.98017 1.22913 1.14886 0.96691 1.01898 1.98318 1.93948 1.24017 1.80645 1.86767 1.66361 1.12172 1.23813 0.92275 0.99349 0.99232 0.75247 0.71770 0.78124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.02 13.29 21.45 0.28 -54.73 15 2 C 0.00 0.19 5.46 84.65 0.46 0.65 15 3 Si 0.98 40.78 29.54 68.60 2.03 42.81 15 4 H -0.27 -10.87 7.11 99.48 0.71 -10.16 15 5 H -0.29 -11.96 7.11 99.48 0.71 -11.25 15 6 H -0.25 -9.65 7.11 99.48 0.71 -8.95 15 7 C -0.55 -28.60 9.28 25.60 0.24 -28.36 15 8 H 0.09 4.01 7.60 -2.91 -0.02 3.98 15 9 C 0.27 13.97 5.43 85.63 0.46 14.43 15 10 N -0.69 -26.59 5.55 -466.78 -2.59 -29.18 15 11 C 0.48 18.44 7.52 87.66 0.66 19.10 15 12 O -0.57 -28.03 15.99 -3.03 -0.05 -28.08 15 13 C 0.16 4.35 4.57 85.48 0.39 4.74 15 14 H 0.16 3.12 8.14 -2.39 -0.02 3.10 15 15 N -0.70 -13.70 5.86 -338.38 -1.98 -15.68 15 16 C 0.14 2.79 11.01 83.04 0.91 3.70 15 17 C -0.22 -5.35 7.30 67.14 0.49 -4.86 15 18 Cl 0.00 0.06 29.31 -2.72 -0.08 -0.02 15 19 S -0.13 -3.84 21.97 -56.49 -1.24 -5.08 15 20 H 0.27 14.86 8.31 -92.71 -0.77 14.09 15 21 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 15 22 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 15 23 H 0.41 12.24 8.32 -92.71 -0.77 11.47 15 24 H 0.44 6.00 8.96 -92.70 -0.83 5.16 15 25 H 0.20 2.32 8.06 -2.91 -0.02 2.29 15 Total: -1.00 -71.79 259.07 -0.37 -72.16 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -0.36 Total: 8.40 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: 3.62 Total: 9.40 kcal Atomic # 7 Polarization: -95.30 SS G_CDS: -4.29 Total: -99.59 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: -0.05 Total: -28.08 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.81 kcal Atomic # 16 Polarization: -3.84 SS G_CDS: -1.24 Total: -5.08 kcal Atomic # 17 Polarization: 0.06 SS G_CDS: -0.08 Total: -0.02 kcal Total: -71.79 -0.37 -72.16 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725568530.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.688 kcal (2) G-P(sol) polarization free energy of solvation -71.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds