Wall clock time and date at job start Mon Mar 30 2020 04:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30681 * 1 3 3 Si 1.86798 * 119.99662 * 2 1 4 4 H 1.48504 * 109.46956 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47037 * 60.00334 * 3 2 1 6 6 H 1.48500 * 109.47112 * 300.00043 * 3 2 1 7 7 C 1.40041 * 119.99874 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00587 * 25.77647 * 7 2 1 9 9 C 1.46381 * 119.99719 * 205.77788 * 7 2 1 10 10 O 1.21694 * 119.99900 * 11.99999 * 9 7 2 11 11 N 1.34770 * 120.00226 * 191.99643 * 9 7 2 12 12 C 1.46496 * 120.00101 * 179.97438 * 11 9 7 13 13 C 1.53005 * 109.47210 * 180.02562 * 12 11 9 14 14 H 1.09003 * 110.76017 * 177.96117 * 13 12 11 15 15 N 1.47302 * 110.86185 * 54.22974 * 13 12 11 16 16 C 1.38016 * 114.49086 * 241.82975 * 15 13 12 17 17 C 1.31687 * 121.13552 * 359.97438 * 16 15 13 18 18 Cl 1.73605 * 126.86839 * 179.97438 * 17 16 15 19 19 S 1.77672 * 106.26152 * 359.97438 * 17 16 15 20 20 H 0.96998 * 119.99976 * 185.08806 * 1 2 3 21 21 H 0.97007 * 120.00336 * 0.02562 * 11 9 7 22 22 H 1.08999 * 109.47748 * 300.00235 * 12 11 9 23 23 H 1.08994 * 109.47028 * 60.00686 * 12 11 9 24 24 H 0.97003 * 122.75432 * 61.78390 * 15 13 12 25 25 H 1.08008 * 119.43423 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.7007 1.3465 -0.0006 5 1 1.8820 2.3964 1.2125 6 1 1.8819 2.3965 -1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 1.5477 -2.1014 -0.4076 9 6 3.3616 -1.2761 0.5507 10 8 3.7976 -0.3450 1.2018 11 7 4.1257 -2.3655 0.3374 12 6 5.4815 -2.4286 0.8887 13 6 6.1275 -3.7609 0.5030 14 1 7.1515 -3.8151 0.8726 15 7 6.0802 -3.9641 -0.9552 16 6 5.3569 -5.0691 -1.3557 17 6 4.7710 -5.8548 -0.4762 18 17 3.8299 -7.2746 -0.8118 19 16 5.1364 -5.1714 1.1226 20 1 -0.4850 -0.8367 0.0745 21 1 3.7783 -3.1076 -0.1818 22 1 6.0756 -1.6076 0.4873 23 1 5.4363 -2.3473 1.9746 24 1 6.5208 -3.3696 -1.5825 25 1 5.2697 -5.2934 -2.4087 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725603972.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:35 Heat of formation + Delta-G solvation = -20.903800 kcal Electronic energy + Delta-G solvation = -13744.745758 eV Core-core repulsion = 11103.668692 eV Total energy + Delta-G solvation = -2641.077066 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 248.013 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.68208 -37.33559 -36.53080 -33.62363 -32.76685 -30.51108 -28.11407 -25.89001 -22.97396 -20.64598 -19.87220 -18.39378 -18.00012 -16.46218 -15.57282 -15.04293 -14.75474 -14.30751 -13.99805 -13.66582 -13.14078 -12.77725 -12.47202 -12.32909 -11.98108 -11.69753 -10.92517 -10.86807 -10.69792 -10.24330 -10.01464 -9.33208 -9.05311 -8.80617 -7.97757 -7.69198 -7.00190 -6.97342 -4.81123 1.20334 1.91962 2.11954 2.32550 3.24195 3.51327 3.57418 4.01970 4.27869 4.44747 4.58465 4.79674 5.13349 5.19153 5.35186 5.47264 5.96696 6.05301 6.61801 7.29653 7.63003 7.75494 7.83865 8.19529 8.88670 9.17601 10.21685 10.31253 Molecular weight = 248.01amu Principal moments of inertia in cm(-1) A = 0.031453 B = 0.006661 C = 0.005957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.002038 B = 4202.648210 C = 4699.099435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.075 3.925 3 Si 1.084 2.916 4 H -0.253 1.253 5 H -0.287 1.287 6 H -0.309 1.309 7 C -0.612 4.612 8 H 0.069 0.931 9 C 0.552 3.448 10 O -0.623 6.623 11 N -0.749 5.749 12 C 0.123 3.877 13 C 0.165 3.835 14 H 0.113 0.887 15 N -0.720 5.720 16 C 0.131 3.869 17 C -0.192 4.192 18 Cl -0.009 7.009 19 S -0.123 6.123 20 H 0.281 0.719 21 H 0.387 0.613 22 H 0.069 0.931 23 H 0.071 0.929 24 H 0.421 0.579 25 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.137 -11.271 -3.772 16.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.145 4.145 3 Si 0.912 3.088 4 H -0.177 1.177 5 H -0.213 1.213 6 H -0.238 1.238 7 C -0.648 4.648 8 H 0.087 0.913 9 C 0.360 3.640 10 O -0.514 6.514 11 N -0.403 5.403 12 C -0.006 4.006 13 C -0.051 4.051 14 H 0.130 0.870 15 N -0.352 5.352 16 C -0.003 4.003 17 C -0.342 4.342 18 Cl 0.019 6.981 19 S 0.110 5.890 20 H 0.092 0.908 21 H 0.220 0.780 22 H 0.087 0.913 23 H 0.090 0.910 24 H 0.261 0.739 25 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 11.854 -9.522 -2.119 15.352 hybrid contribution 0.147 -1.902 -1.719 2.568 sum 12.001 -11.424 -3.838 17.008 Atomic orbital electron populations 1.70587 1.08248 1.32106 1.34191 1.26892 0.94952 1.04477 0.88154 0.83323 0.77961 0.72066 0.75497 1.17725 1.21289 1.23807 1.21861 0.98376 0.98976 1.45576 0.91279 1.18280 0.85461 0.79876 0.80389 1.90438 1.76274 1.37985 1.46697 1.45780 1.13210 1.22097 1.59235 1.21379 0.86787 0.92943 0.99491 1.24472 1.01387 0.96449 0.82797 0.86955 1.44878 1.56673 1.28028 1.05649 1.20378 0.92825 0.87608 0.99533 1.22701 1.14771 1.01021 0.95658 1.98323 1.70524 1.34927 1.94305 1.86579 1.66401 1.27713 1.08258 0.90811 0.77959 0.91336 0.91047 0.73915 0.82454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.03 13.65 55.55 0.76 -23.27 15 2 C 0.08 2.17 5.48 -17.37 -0.10 2.08 15 3 Si 1.08 27.82 27.33 -169.99 -4.65 23.17 15 4 H -0.25 -6.66 5.81 56.52 0.33 -6.33 15 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 15 6 H -0.31 -7.47 7.11 56.52 0.40 -7.07 15 7 C -0.61 -17.55 9.81 -35.63 -0.35 -17.90 15 8 H 0.07 2.00 8.06 -52.49 -0.42 1.57 15 9 C 0.55 14.82 7.32 -12.99 -0.10 14.73 15 10 O -0.62 -18.01 12.77 5.19 0.07 -17.95 15 11 N -0.75 -15.93 5.15 -61.72 -0.32 -16.25 15 12 C 0.12 2.08 5.67 -4.04 -0.02 2.05 15 13 C 0.17 2.11 4.46 -3.60 -0.02 2.09 15 14 H 0.11 1.13 8.14 -51.93 -0.42 0.71 15 15 N -0.72 -7.98 5.42 -57.16 -0.31 -8.29 15 16 C 0.13 1.52 10.56 -16.64 -0.18 1.34 15 17 C -0.19 -2.62 7.30 28.86 0.21 -2.41 15 18 Cl -0.01 -0.11 29.31 -51.86 -1.52 -1.63 15 19 S -0.12 -1.82 22.00 -107.50 -2.37 -4.19 15 20 H 0.28 7.95 8.72 -40.82 -0.36 7.59 15 21 H 0.39 7.92 7.22 -40.82 -0.29 7.63 15 22 H 0.07 1.14 8.14 -51.93 -0.42 0.72 15 23 H 0.07 1.28 8.14 -51.93 -0.42 0.86 15 24 H 0.42 3.74 8.96 -40.82 -0.37 3.37 15 25 H 0.16 1.41 8.06 -52.48 -0.42 0.99 15 LS Contribution 251.71 15.07 3.79 3.79 Total: -1.00 -32.41 251.71 -7.09 -39.50 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -2.00 Total: 3.12 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -0.54 Total: 1.99 kcal Atomic # 7 Polarization: -47.94 SS G_CDS: 0.13 Total: -47.81 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: 0.07 Total: -17.95 kcal Atomic # 14 Polarization: 27.82 SS G_CDS: -4.65 Total: 23.17 kcal Atomic # 16 Polarization: -1.82 SS G_CDS: -2.37 Total: -4.19 kcal Atomic # 17 Polarization: -0.11 SS G_CDS: -1.52 Total: -1.63 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -32.41 -7.09 -39.50 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725603972.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.594 kcal (2) G-P(sol) polarization free energy of solvation -32.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds