Wall clock time and date at job start Mon Mar 30 2020 04:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30681 * 1 3 3 Si 1.86798 * 119.99662 * 2 1 4 4 H 1.48504 * 109.46956 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47037 * 60.00334 * 3 2 1 6 6 H 1.48500 * 109.47112 * 300.00043 * 3 2 1 7 7 C 1.40041 * 119.99874 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00587 * 25.77647 * 7 2 1 9 9 C 1.46381 * 119.99719 * 205.77788 * 7 2 1 10 10 O 1.21694 * 119.99900 * 11.99999 * 9 7 2 11 11 N 1.34770 * 120.00226 * 191.99643 * 9 7 2 12 12 C 1.46496 * 120.00101 * 179.97438 * 11 9 7 13 13 C 1.53005 * 109.47210 * 180.02562 * 12 11 9 14 14 H 1.09003 * 110.76017 * 177.96117 * 13 12 11 15 15 N 1.47302 * 110.86185 * 54.22974 * 13 12 11 16 16 C 1.38016 * 114.49086 * 241.82975 * 15 13 12 17 17 C 1.31687 * 121.13552 * 359.97438 * 16 15 13 18 18 Cl 1.73605 * 126.86839 * 179.97438 * 17 16 15 19 19 S 1.77672 * 106.26152 * 359.97438 * 17 16 15 20 20 H 0.96998 * 119.99976 * 185.08806 * 1 2 3 21 21 H 0.97007 * 120.00336 * 0.02562 * 11 9 7 22 22 H 1.08999 * 109.47748 * 300.00235 * 12 11 9 23 23 H 1.08994 * 109.47028 * 60.00686 * 12 11 9 24 24 H 0.97003 * 122.75432 * 61.78390 * 15 13 12 25 25 H 1.08008 * 119.43423 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.7007 1.3465 -0.0006 5 1 1.8820 2.3964 1.2125 6 1 1.8819 2.3965 -1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 1.5477 -2.1014 -0.4076 9 6 3.3616 -1.2761 0.5507 10 8 3.7976 -0.3450 1.2018 11 7 4.1257 -2.3655 0.3374 12 6 5.4815 -2.4286 0.8887 13 6 6.1275 -3.7609 0.5030 14 1 7.1515 -3.8151 0.8726 15 7 6.0802 -3.9641 -0.9552 16 6 5.3569 -5.0691 -1.3557 17 6 4.7710 -5.8548 -0.4762 18 17 3.8299 -7.2746 -0.8118 19 16 5.1364 -5.1714 1.1226 20 1 -0.4850 -0.8367 0.0745 21 1 3.7783 -3.1076 -0.1818 22 1 6.0756 -1.6076 0.4873 23 1 5.4363 -2.3473 1.9746 24 1 6.5208 -3.3696 -1.5825 25 1 5.2697 -5.2934 -2.4087 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725603972.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:35 Heat of formation + Delta-G solvation = -45.288464 kcal Electronic energy + Delta-G solvation = -13745.803157 eV Core-core repulsion = 11103.668692 eV Total energy + Delta-G solvation = -2642.134464 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 248.013 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.11926 -38.93524 -37.55465 -35.35604 -34.88007 -31.81055 -29.47010 -27.79203 -24.31142 -21.90181 -21.54682 -20.10988 -19.45869 -17.55928 -17.43704 -16.68414 -16.09779 -15.74849 -15.44631 -15.31816 -14.72297 -14.35349 -14.15342 -13.70215 -13.51579 -13.25735 -12.78019 -12.14874 -11.96193 -11.88817 -11.38662 -11.27744 -11.00515 -10.15324 -10.04750 -9.58168 -9.20726 -8.05076 -7.04540 0.16719 0.96034 1.11018 1.32170 1.46387 1.51664 1.98621 2.15246 2.27777 2.46778 2.92752 3.31938 3.54914 4.13304 4.30882 4.39108 4.59042 4.67078 5.52843 5.59418 5.62257 5.92413 6.05318 6.50422 6.68568 7.20370 8.07558 8.12724 Molecular weight = 248.01amu Principal moments of inertia in cm(-1) A = 0.031453 B = 0.006661 C = 0.005957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.002038 B = 4202.648210 C = 4699.099435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.040 3.960 3 Si 1.121 2.879 4 H -0.263 1.263 5 H -0.287 1.287 6 H -0.285 1.285 7 C -0.634 4.634 8 H 0.055 0.945 9 C 0.552 3.448 10 O -0.645 6.645 11 N -0.737 5.737 12 C 0.119 3.881 13 C 0.186 3.814 14 H 0.152 0.848 15 N -0.710 5.710 16 C 0.146 3.854 17 C -0.217 4.217 18 Cl -0.008 7.008 19 S -0.178 6.178 20 H 0.277 0.723 21 H 0.392 0.608 22 H 0.078 0.922 23 H 0.061 0.939 24 H 0.435 0.565 25 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.801 -11.195 -4.733 18.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.176 4.176 3 Si 0.945 3.055 4 H -0.188 1.188 5 H -0.213 1.213 6 H -0.212 1.212 7 C -0.670 4.670 8 H 0.074 0.926 9 C 0.357 3.643 10 O -0.538 6.538 11 N -0.389 5.389 12 C -0.009 4.009 13 C -0.031 4.031 14 H 0.169 0.831 15 N -0.344 5.344 16 C 0.012 3.988 17 C -0.366 4.366 18 Cl 0.020 6.980 19 S 0.054 5.946 20 H 0.088 0.912 21 H 0.226 0.774 22 H 0.096 0.904 23 H 0.080 0.920 24 H 0.278 0.722 25 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 13.531 -9.478 -3.115 16.811 hybrid contribution -0.343 -2.005 -1.422 2.481 sum 13.188 -11.482 -4.537 18.065 Atomic orbital electron populations 1.70625 1.08628 1.31956 1.35544 1.27854 0.95260 1.06873 0.87661 0.82844 0.76327 0.69961 0.76394 1.18824 1.21304 1.21242 1.22020 0.99892 0.98689 1.46406 0.92646 1.18090 0.85430 0.80893 0.79881 1.90421 1.76671 1.39184 1.47494 1.45495 1.14589 1.20480 1.58321 1.21606 0.84512 0.95911 0.98875 1.24385 1.02068 0.92884 0.83745 0.83077 1.44925 1.56236 1.28046 1.05196 1.20771 0.90815 0.86544 1.00665 1.22745 1.16878 1.02234 0.94731 1.98317 1.70647 1.34950 1.94127 1.86761 1.67689 1.29264 1.10840 0.91243 0.77399 0.90378 0.92041 0.72233 0.79367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -49.02 13.65 21.83 0.30 -48.72 15 2 C 0.04 2.28 5.48 85.30 0.47 2.74 15 3 Si 1.12 55.62 27.33 68.60 1.88 57.50 15 4 H -0.26 -13.44 5.81 99.48 0.58 -12.86 15 5 H -0.29 -14.13 7.11 99.48 0.71 -13.42 15 6 H -0.28 -12.88 7.11 99.48 0.71 -12.17 15 7 C -0.63 -36.40 9.81 24.83 0.24 -36.15 15 8 H 0.06 3.25 8.06 -2.91 -0.02 3.22 15 9 C 0.55 29.22 7.32 86.36 0.63 29.85 15 10 O -0.64 -36.72 12.77 -4.33 -0.06 -36.78 15 11 N -0.74 -30.31 5.15 -467.41 -2.41 -32.71 15 12 C 0.12 3.76 5.67 86.38 0.49 4.25 15 13 C 0.19 4.20 4.46 86.23 0.38 4.58 15 14 H 0.15 2.42 8.14 -2.39 -0.02 2.40 15 15 N -0.71 -13.26 5.42 -334.77 -1.82 -15.07 15 16 C 0.15 2.96 10.56 83.04 0.88 3.84 15 17 C -0.22 -5.52 7.30 67.14 0.49 -5.03 15 18 Cl -0.01 -0.20 29.31 -2.72 -0.08 -0.28 15 19 S -0.18 -5.06 22.00 -56.49 -1.24 -6.30 15 20 H 0.28 15.87 8.72 -92.71 -0.81 15.06 15 21 H 0.39 15.49 7.22 -92.70 -0.67 14.82 15 22 H 0.08 2.38 8.14 -2.39 -0.02 2.36 15 23 H 0.06 2.11 8.14 -2.39 -0.02 2.09 15 24 H 0.44 5.94 8.96 -92.71 -0.83 5.11 15 25 H 0.19 2.64 8.06 -2.91 -0.02 2.62 15 Total: -1.00 -68.79 251.71 -0.26 -69.06 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -0.42 Total: 9.23 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: 3.58 Total: 4.08 kcal Atomic # 7 Polarization: -92.58 SS G_CDS: -3.92 Total: -96.51 kcal Atomic # 8 Polarization: -36.72 SS G_CDS: -0.06 Total: -36.78 kcal Atomic # 14 Polarization: 55.62 SS G_CDS: 1.88 Total: 57.50 kcal Atomic # 16 Polarization: -5.06 SS G_CDS: -1.24 Total: -6.30 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -0.08 Total: -0.28 kcal Total: -68.79 -0.26 -69.06 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725603972.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.768 kcal (2) G-P(sol) polarization free energy of solvation -68.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds