Wall clock time and date at job start Mon Mar 30 2020 04:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86800 * 119.99719 * 2 1 4 4 H 1.48507 * 109.47174 * 240.00460 * 3 2 1 5 5 H 1.48507 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47433 * 120.00007 * 3 2 1 7 7 C 1.40048 * 120.00322 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.46378 * 119.99776 * 359.97438 * 7 2 1 10 10 O 1.21681 * 120.00108 * 359.97438 * 9 7 2 11 11 N 1.34778 * 119.99457 * 180.02562 * 9 7 2 12 12 C 1.46501 * 119.99444 * 179.97438 * 11 9 7 13 13 C 1.53004 * 109.46998 * 179.97438 * 12 11 9 14 14 H 1.08998 * 110.91743 * 176.38790 * 13 12 11 15 15 N 1.47299 * 110.85831 * 300.00522 * 13 12 11 16 16 C 1.38025 * 114.49129 * 118.17433 * 15 13 12 17 17 C 1.31679 * 121.13252 * 359.97438 * 16 15 13 18 18 Cl 1.73604 * 126.86609 * 180.02562 * 17 16 15 19 19 S 1.77676 * 106.26769 * 0.02562 * 17 16 15 20 20 H 0.96995 * 120.00453 * 359.97438 * 1 2 3 21 21 H 0.96996 * 120.00517 * 359.97438 * 11 9 7 22 22 H 1.09004 * 109.46853 * 60.00358 * 12 11 9 23 23 H 1.08999 * 109.47383 * 300.00346 * 12 11 9 24 24 H 0.97002 * 122.75285 * 298.44094 * 15 13 12 25 25 H 1.07998 * 119.43017 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0944 1.6965 -1.2126 5 1 1.2755 2.7465 -0.0006 6 1 3.0944 1.6966 1.2124 7 6 2.0071 -1.2128 -0.0005 8 1 3.0870 -1.2127 -0.0010 9 6 1.2752 -2.4805 -0.0005 10 8 0.0584 -2.4805 0.0004 11 7 1.9492 -3.6476 -0.0005 12 6 1.2167 -4.9164 0.0000 13 6 2.2110 -6.0793 -0.0007 14 1 1.6917 -7.0354 0.0638 15 7 3.0741 -6.0306 -1.1934 16 6 4.4186 -5.8784 -0.9209 17 6 4.8562 -5.7872 0.3177 18 17 6.5040 -5.5936 0.8286 19 16 3.4229 -5.9018 1.3616 20 1 -0.4850 0.8400 0.0004 21 1 2.9192 -3.6476 -0.0009 22 1 0.5898 -4.9743 -0.8898 23 1 0.5904 -4.9739 0.8902 24 1 2.7257 -6.0960 -2.0963 25 1 5.1238 -5.8334 -1.7376 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725603973.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:36 Heat of formation + Delta-G solvation = -12.059627 kcal Electronic energy + Delta-G solvation = -13688.548909 eV Core-core repulsion = 11047.855355 eV Total energy + Delta-G solvation = -2640.693554 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 248.013 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.50340 -36.97756 -36.42189 -33.41174 -32.28711 -30.34685 -27.96724 -25.97116 -22.95700 -20.57666 -19.84730 -18.24200 -17.33025 -16.35449 -15.41178 -14.71537 -14.58178 -14.51047 -13.88312 -13.61830 -12.88320 -12.61532 -12.43264 -12.02762 -11.47117 -11.16873 -10.94813 -10.80751 -10.72370 -10.42059 -10.22087 -10.13890 -8.95375 -8.82122 -7.61405 -7.51196 -6.87783 -6.16450 -4.60896 1.29353 2.00032 2.21468 2.40533 3.18240 3.22757 3.25091 3.33933 4.12889 4.61118 4.71803 4.94462 5.21123 5.35510 5.44391 5.76340 6.16849 6.23151 6.71460 7.38174 7.46313 7.94988 8.08555 8.35430 9.05351 9.54576 10.61961 10.80372 Molecular weight = 248.01amu Principal moments of inertia in cm(-1) A = 0.026060 B = 0.006804 C = 0.005777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.175597 B = 4114.135664 C = 4845.899817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.089 3.911 3 Si 0.907 3.093 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.543 4.543 8 H 0.066 0.934 9 C 0.557 3.443 10 O -0.584 6.584 11 N -0.757 5.757 12 C 0.126 3.874 13 C 0.165 3.835 14 H 0.111 0.889 15 N -0.720 5.720 16 C 0.131 3.869 17 C -0.194 4.194 18 Cl -0.010 7.010 19 S -0.120 6.120 20 H 0.268 0.732 21 H 0.383 0.617 22 H 0.065 0.935 23 H 0.068 0.932 24 H 0.420 0.580 25 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.362 -12.122 -2.197 15.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.580 4.580 8 H 0.084 0.916 9 C 0.361 3.639 10 O -0.467 6.467 11 N -0.415 5.415 12 C -0.003 4.003 13 C -0.051 4.051 14 H 0.128 0.872 15 N -0.352 5.352 16 C -0.003 4.003 17 C -0.343 4.343 18 Cl 0.018 6.982 19 S 0.114 5.886 20 H 0.079 0.921 21 H 0.216 0.784 22 H 0.083 0.917 23 H 0.086 0.914 24 H 0.260 0.740 25 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 8.167 -12.005 -0.818 14.543 hybrid contribution 1.193 0.787 -1.611 2.153 sum 9.360 -11.218 -2.429 14.810 Atomic orbital electron populations 1.70010 1.07031 1.27303 1.35479 1.25688 0.94593 1.00215 0.92601 0.86451 0.79835 0.81066 0.79502 1.19340 1.20591 1.19190 1.20827 0.93543 0.89353 1.54242 0.91572 1.18181 0.87115 0.82364 0.76268 1.90592 1.14086 1.86879 1.55158 1.46099 1.08708 1.03984 1.82659 1.21272 0.92912 0.84154 1.01961 1.24504 0.93383 1.02435 0.84782 0.87153 1.44912 1.02632 1.79330 1.08328 1.20354 0.86548 0.96504 0.96886 1.22692 0.90141 1.26762 0.94707 1.98317 1.12771 1.96759 1.90401 1.86589 0.97366 1.93284 1.11406 0.92113 0.78389 0.91718 0.91377 0.74032 0.82595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.24 11.83 55.55 0.66 -22.58 15 2 C 0.09 2.50 5.50 -17.37 -0.10 2.41 15 3 Si 0.91 20.45 29.56 -169.99 -5.02 15.43 15 4 H -0.27 -5.88 7.11 56.52 0.40 -5.47 15 5 H -0.28 -6.16 7.11 56.52 0.40 -5.76 15 6 H -0.27 -5.90 7.11 56.52 0.40 -5.50 15 7 C -0.54 -15.58 9.54 -35.63 -0.34 -15.92 15 8 H 0.07 1.77 7.85 -52.49 -0.41 1.36 15 9 C 0.56 15.90 7.75 -12.99 -0.10 15.80 15 10 O -0.58 -18.85 15.02 5.21 0.08 -18.77 15 11 N -0.76 -16.89 5.14 -61.72 -0.32 -17.21 15 12 C 0.13 2.28 5.70 -4.04 -0.02 2.25 15 13 C 0.17 2.23 4.47 -3.60 -0.02 2.22 15 14 H 0.11 1.20 8.14 -51.93 -0.42 0.78 15 15 N -0.72 -8.36 5.63 -57.17 -0.32 -8.68 15 16 C 0.13 1.56 10.75 -16.63 -0.18 1.39 15 17 C -0.19 -2.68 7.30 28.86 0.21 -2.47 15 18 Cl -0.01 -0.13 29.31 -51.86 -1.52 -1.65 15 19 S -0.12 -1.84 21.63 -107.50 -2.33 -4.16 15 20 H 0.27 7.37 8.29 -40.82 -0.34 7.03 15 21 H 0.38 8.09 7.25 -40.82 -0.30 7.79 15 22 H 0.06 1.18 8.14 -51.93 -0.42 0.75 15 23 H 0.07 1.32 8.14 -51.93 -0.42 0.89 15 24 H 0.42 3.95 8.96 -40.82 -0.37 3.58 15 25 H 0.16 1.43 8.06 -52.49 -0.42 1.01 15 LS Contribution 255.29 15.07 3.85 3.85 Total: -1.00 -34.28 255.29 -7.37 -41.64 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -1.90 Total: 6.47 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: -0.54 Total: 5.67 kcal Atomic # 7 Polarization: -48.49 SS G_CDS: 0.02 Total: -48.47 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: 0.08 Total: -18.77 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 16 Polarization: -1.84 SS G_CDS: -2.33 Total: -4.16 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -1.52 Total: -1.65 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -34.28 -7.37 -41.64 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725603973.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.585 kcal (2) G-P(sol) polarization free energy of solvation -34.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds