Wall clock time and date at job start Mon Mar 30 2020 04:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86800 * 119.99719 * 2 1 4 4 H 1.48507 * 109.47174 * 240.00460 * 3 2 1 5 5 H 1.48507 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47433 * 120.00007 * 3 2 1 7 7 C 1.40048 * 120.00322 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.46378 * 119.99776 * 359.97438 * 7 2 1 10 10 O 1.21681 * 120.00108 * 359.97438 * 9 7 2 11 11 N 1.34778 * 119.99457 * 180.02562 * 9 7 2 12 12 C 1.46501 * 119.99444 * 179.97438 * 11 9 7 13 13 C 1.53004 * 109.46998 * 179.97438 * 12 11 9 14 14 H 1.08998 * 110.91743 * 176.38790 * 13 12 11 15 15 N 1.47299 * 110.85831 * 300.00522 * 13 12 11 16 16 C 1.38025 * 114.49129 * 118.17433 * 15 13 12 17 17 C 1.31679 * 121.13252 * 359.97438 * 16 15 13 18 18 Cl 1.73604 * 126.86609 * 180.02562 * 17 16 15 19 19 S 1.77676 * 106.26769 * 0.02562 * 17 16 15 20 20 H 0.96995 * 120.00453 * 359.97438 * 1 2 3 21 21 H 0.96996 * 120.00517 * 359.97438 * 11 9 7 22 22 H 1.09004 * 109.46853 * 60.00358 * 12 11 9 23 23 H 1.08999 * 109.47383 * 300.00346 * 12 11 9 24 24 H 0.97002 * 122.75285 * 298.44094 * 15 13 12 25 25 H 1.07998 * 119.43017 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0944 1.6965 -1.2126 5 1 1.2755 2.7465 -0.0006 6 1 3.0944 1.6966 1.2124 7 6 2.0071 -1.2128 -0.0005 8 1 3.0870 -1.2127 -0.0010 9 6 1.2752 -2.4805 -0.0005 10 8 0.0584 -2.4805 0.0004 11 7 1.9492 -3.6476 -0.0005 12 6 1.2167 -4.9164 0.0000 13 6 2.2110 -6.0793 -0.0007 14 1 1.6917 -7.0354 0.0638 15 7 3.0741 -6.0306 -1.1934 16 6 4.4186 -5.8784 -0.9209 17 6 4.8562 -5.7872 0.3177 18 17 6.5040 -5.5936 0.8286 19 16 3.4229 -5.9018 1.3616 20 1 -0.4850 0.8400 0.0004 21 1 2.9192 -3.6476 -0.0009 22 1 0.5898 -4.9743 -0.8898 23 1 0.5904 -4.9739 0.8902 24 1 2.7257 -6.0960 -2.0963 25 1 5.1238 -5.8334 -1.7376 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725603973.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:36 Heat of formation + Delta-G solvation = -38.300388 kcal Electronic energy + Delta-G solvation = -13689.686794 eV Core-core repulsion = 11047.855355 eV Total energy + Delta-G solvation = -2641.831439 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 248.013 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.88773 -38.71610 -37.49673 -35.20719 -34.40228 -31.72250 -29.42251 -27.88223 -24.36937 -21.90744 -21.52059 -19.48874 -19.21334 -17.51677 -17.47125 -16.25868 -16.14313 -15.72670 -15.38948 -15.15790 -14.51088 -14.09410 -13.76148 -13.49147 -13.14863 -13.05519 -12.68654 -12.60757 -12.06959 -11.92510 -11.82643 -11.24133 -10.91311 -10.08416 -9.85031 -9.45823 -8.28549 -8.00382 -6.84102 0.20095 1.00938 1.15088 1.36851 1.39997 1.43259 1.54598 2.24959 2.32161 2.48546 3.11404 3.60715 3.63983 4.16470 4.35381 4.42860 4.63108 4.71891 5.32078 5.66191 5.87953 6.20019 6.26353 6.53419 6.87970 7.52195 8.49471 8.67901 Molecular weight = 248.01amu Principal moments of inertia in cm(-1) A = 0.026060 B = 0.006804 C = 0.005777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.175597 B = 4114.135664 C = 4845.899817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.032 3.968 3 Si 0.993 3.007 4 H -0.254 1.254 5 H -0.273 1.273 6 H -0.257 1.257 7 C -0.573 4.573 8 H 0.080 0.920 9 C 0.541 3.459 10 O -0.632 6.632 11 N -0.743 5.743 12 C 0.124 3.876 13 C 0.186 3.814 14 H 0.148 0.852 15 N -0.711 5.711 16 C 0.146 3.854 17 C -0.215 4.215 18 Cl -0.006 7.006 19 S -0.174 6.174 20 H 0.274 0.726 21 H 0.390 0.610 22 H 0.065 0.935 23 H 0.052 0.948 24 H 0.434 0.566 25 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.067 -12.095 -3.190 16.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.183 4.183 3 Si 0.813 3.187 4 H -0.178 1.178 5 H -0.197 1.197 6 H -0.182 1.182 7 C -0.610 4.610 8 H 0.098 0.902 9 C 0.345 3.655 10 O -0.519 6.519 11 N -0.399 5.399 12 C -0.005 4.005 13 C -0.031 4.031 14 H 0.165 0.835 15 N -0.344 5.344 16 C 0.012 3.988 17 C -0.364 4.364 18 Cl 0.022 6.978 19 S 0.059 5.941 20 H 0.084 0.916 21 H 0.225 0.775 22 H 0.083 0.917 23 H 0.070 0.930 24 H 0.276 0.724 25 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 9.912 -12.035 -1.834 15.699 hybrid contribution 0.667 0.701 -1.313 1.631 sum 10.579 -11.334 -3.146 15.820 Atomic orbital electron populations 1.70165 1.09370 1.28950 1.36499 1.26892 0.95489 1.04701 0.91204 0.85139 0.78306 0.75044 0.80239 1.17766 1.19725 1.18150 1.21344 0.94424 0.90364 1.54866 0.90217 1.18485 0.86732 0.84229 0.76005 1.90547 1.16004 1.87978 1.57378 1.45728 1.08981 1.04185 1.80975 1.21421 0.93833 0.83956 1.01281 1.24344 0.92231 1.01651 0.84856 0.83505 1.44951 1.02414 1.78602 1.08456 1.20770 0.86861 0.93900 0.97248 1.22725 0.89873 1.29338 0.94490 1.98314 1.12140 1.96859 1.90462 1.86777 0.99761 1.93749 1.13776 0.91563 0.77520 0.91670 0.92992 0.72410 0.79217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.41 11.83 21.84 0.26 -50.15 15 2 C 0.03 1.82 5.50 85.30 0.47 2.29 15 3 Si 0.99 41.48 29.56 68.60 2.03 43.51 15 4 H -0.25 -9.92 7.11 99.48 0.71 -9.21 15 5 H -0.27 -10.91 7.11 99.48 0.71 -10.20 15 6 H -0.26 -10.27 7.11 99.48 0.71 -9.56 15 7 C -0.57 -33.03 9.54 24.83 0.24 -32.79 15 8 H 0.08 4.21 7.85 -2.91 -0.02 4.19 15 9 C 0.54 31.45 7.75 86.36 0.67 32.12 15 10 O -0.63 -42.00 15.02 -4.29 -0.06 -42.07 15 11 N -0.74 -33.08 5.14 -467.40 -2.40 -35.49 15 12 C 0.12 4.42 5.70 86.38 0.49 4.91 15 13 C 0.19 4.67 4.47 86.23 0.39 5.05 15 14 H 0.15 2.77 8.14 -2.39 -0.02 2.75 15 15 N -0.71 -14.45 5.63 -334.78 -1.89 -16.33 15 16 C 0.15 3.05 10.75 83.05 0.89 3.95 15 17 C -0.22 -5.55 7.30 67.15 0.49 -5.06 15 18 Cl -0.01 -0.14 29.31 -2.72 -0.08 -0.22 15 19 S -0.17 -5.16 21.63 -56.49 -1.22 -6.38 15 20 H 0.27 15.30 8.29 -92.71 -0.77 14.53 15 21 H 0.39 16.19 7.25 -92.71 -0.67 15.51 15 22 H 0.07 2.34 8.14 -2.38 -0.02 2.32 15 23 H 0.05 2.04 8.14 -2.39 -0.02 2.02 15 24 H 0.43 6.70 8.96 -92.71 -0.83 5.87 15 25 H 0.19 2.69 8.06 -2.91 -0.02 2.67 15 Total: -1.00 -75.78 255.29 0.01 -75.77 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: -0.26 Total: 20.89 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: 3.64 Total: 10.47 kcal Atomic # 7 Polarization: -97.94 SS G_CDS: -4.03 Total: -101.97 kcal Atomic # 8 Polarization: -42.00 SS G_CDS: -0.06 Total: -42.07 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Atomic # 16 Polarization: -5.16 SS G_CDS: -1.22 Total: -6.38 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -0.08 Total: -0.22 kcal Total: -75.78 0.01 -75.77 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725603973.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.466 kcal (2) G-P(sol) polarization free energy of solvation -75.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds