Wall clock time and date at job start Mon Mar 30 2020 03:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 H 1.09001 * 109.50168 * 250.33746 * 3 2 1 5 5 C 1.53119 * 109.50194 * 130.26192 * 3 2 1 6 6 C 1.53114 * 109.16060 * 182.40544 * 5 3 2 7 7 C 1.53035 * 109.28054 * 57.65437 * 6 5 3 8 8 N 1.46851 * 109.52351 * 300.82182 * 7 6 5 9 9 C 1.46897 * 111.00369 * 185.84237 * 8 7 6 10 10 C 1.52994 * 109.47245 * 66.04211 * 9 8 7 11 11 H 1.09001 * 109.47277 * 305.00059 * 10 9 8 12 12 C 1.47195 * 109.47236 * 65.00363 * 10 9 8 13 13 N 6.71995 * 152.81475 * 311.51526 * 2 1 3 14 14 C 1.53003 * 109.47175 * 185.00233 * 10 9 8 15 15 C 1.50703 * 109.47391 * 174.99945 * 14 10 9 16 16 H 1.08001 * 119.99724 * 359.97438 * 15 14 10 17 17 C 1.37877 * 120.00047 * 180.02562 * 15 14 10 18 18 N 1.31516 * 119.99865 * 180.02562 * 17 15 14 19 19 Si 1.86796 * 119.99933 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.47286 * 90.00578 * 19 17 15 21 21 H 1.48500 * 109.46796 * 209.99933 * 19 17 15 22 22 H 1.48493 * 109.47439 * 330.00001 * 19 17 15 23 23 C 1.46842 * 111.19620 * 61.73856 * 8 7 6 24 24 H 4.18787 * 15.03152 * 359.97438 * 4 2 1 25 25 H 1.09007 * 109.52052 * 302.31060 * 5 3 2 26 26 H 1.09003 * 109.52571 * 62.43050 * 5 3 2 27 27 H 1.09005 * 109.50171 * 177.59220 * 6 5 3 28 28 H 1.09001 * 109.50663 * 297.70766 * 6 5 3 29 29 H 1.09002 * 109.46556 * 60.83317 * 7 6 5 30 30 H 1.08998 * 109.46761 * 180.80516 * 7 6 5 31 31 H 1.08991 * 109.47370 * 186.04622 * 9 8 7 32 32 H 1.08998 * 109.46835 * 306.04325 * 9 8 7 33 33 H 1.09000 * 109.47556 * 295.00148 * 14 10 9 34 34 H 1.09003 * 109.46845 * 54.99978 * 14 10 9 35 35 H 0.96993 * 120.00098 * 180.02562 * 18 17 15 36 36 H 1.09002 * 109.45960 * 178.24556 * 23 8 7 37 37 H 1.08996 * 109.46282 * 58.27965 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0097 0.3465 0.9676 5 6 3.1567 0.9337 -1.1014 6 6 4.6867 0.8824 -1.1340 7 6 5.1391 -0.5614 -1.3630 8 7 4.6258 -1.4138 -0.2829 9 6 5.1545 -2.7798 -0.3938 10 6 6.6659 -2.7626 -0.1569 11 1 7.1335 -2.0584 -0.8450 12 6 6.9406 -2.3501 1.2292 13 7 7.1516 -2.0349 2.2989 14 6 7.2354 -4.1626 -0.3947 15 6 8.7376 -4.1198 -0.2818 16 1 9.2362 -3.1872 -0.0628 17 6 9.4753 -5.2710 -0.4592 18 7 10.7862 -5.2336 -0.3602 19 14 8.6129 -6.8838 -0.8388 20 1 8.4791 -7.0395 -2.3095 21 1 9.4094 -8.0116 -0.2921 22 1 7.2646 -6.8827 -0.2164 23 6 3.1576 -1.4177 -0.2619 24 1 -1.0500 0.0004 -0.0005 25 1 2.7608 0.6113 -2.0645 26 1 2.8297 1.9530 -0.8960 27 1 5.0547 1.5119 -1.9443 28 1 5.0832 1.2418 -0.1844 29 1 4.7538 -0.9155 -2.3192 30 1 6.2282 -0.6037 -1.3725 31 1 4.6771 -3.4158 0.3516 32 1 4.9474 -3.1697 -1.3903 33 1 6.8345 -4.8495 0.3507 34 1 6.9555 -4.5042 -1.3913 35 1 11.3053 -6.0434 -0.4853 36 1 2.8075 -2.0817 0.5285 37 1 2.7815 -1.7677 -1.2232 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847030326.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:12 Heat of formation + Delta-G solvation = 66.422688 kcal Electronic energy + Delta-G solvation = -17274.203831 eV Core-core repulsion = 14631.404267 eV Total energy + Delta-G solvation = -2642.799565 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.43672 -36.70338 -34.68934 -33.53159 -32.66024 -31.43422 -30.17674 -27.42145 -24.71691 -23.60056 -22.24041 -21.42709 -20.05464 -18.25165 -16.89295 -16.70827 -15.94820 -15.14175 -14.65788 -14.58584 -14.34347 -13.95571 -13.57217 -13.19581 -13.00895 -12.62972 -12.43269 -12.12634 -11.94369 -11.69367 -11.39200 -11.26138 -11.20015 -10.94012 -10.87608 -10.62784 -10.36351 -10.27044 -10.14040 -9.88345 -9.70834 -9.31508 -8.61951 -8.28540 -6.10820 -4.11461 2.63092 2.68726 3.25445 3.34676 3.35527 3.68599 3.78353 3.84932 4.28576 4.38118 4.70728 4.76194 4.81944 4.90651 5.11968 5.22156 5.24045 5.42063 5.44849 5.49082 5.53431 5.66984 5.78772 5.85090 5.87571 5.90947 5.93911 6.04344 6.21260 6.25167 6.33017 6.91650 7.05976 7.08769 7.15155 7.45924 7.63607 8.40579 8.56489 8.92876 9.49067 11.02318 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.034084 B = 0.004817 C = 0.004642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.306662 B = 5811.881337 C = 6030.643656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.173 4.173 3 C 0.020 3.980 4 H 0.101 0.899 5 C -0.109 4.109 6 C -0.117 4.117 7 C 0.046 3.954 8 N -0.541 5.541 9 C 0.061 3.939 10 C 0.020 3.980 11 H 0.106 0.894 12 C 0.254 3.746 13 N -0.471 5.471 14 C -0.006 4.006 15 C -0.527 4.527 16 H 0.074 0.926 17 C 0.071 3.929 18 N -0.897 5.897 19 Si 0.877 3.123 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.264 1.264 23 C 0.068 3.932 24 H 0.216 0.784 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.037 0.963 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.054 0.946 33 H 0.025 0.975 34 H 0.032 0.968 35 H 0.264 0.736 36 H 0.078 0.922 37 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.129 9.092 -4.905 20.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.173 4.173 3 C 0.002 3.998 4 H 0.119 0.881 5 C -0.147 4.147 6 C -0.155 4.155 7 C -0.081 4.081 8 N -0.265 5.265 9 C -0.068 4.068 10 C -0.002 4.002 11 H 0.124 0.876 12 C -0.063 4.063 13 N -0.148 5.148 14 C -0.045 4.045 15 C -0.565 4.565 16 H 0.092 0.908 17 C -0.131 4.131 18 N -0.535 5.535 19 Si 0.704 3.296 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.189 1.189 23 C -0.060 4.060 24 H 0.233 0.767 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.055 0.945 30 H 0.105 0.895 31 H 0.099 0.901 32 H 0.072 0.928 33 H 0.044 0.956 34 H 0.050 0.950 35 H 0.074 0.926 36 H 0.096 0.904 37 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -17.462 9.650 -2.857 20.154 hybrid contribution -0.826 -1.414 -1.357 2.126 sum -18.288 8.236 -4.214 20.495 Atomic orbital electron populations 1.24861 0.95862 1.00878 1.01644 1.23072 0.94230 1.00207 0.99828 1.18348 0.83761 0.96523 1.01162 0.88146 1.21589 0.96163 0.99039 0.97919 1.21595 0.94633 0.96352 1.02878 1.22238 1.01185 0.92785 0.91902 1.61871 1.06922 1.11205 1.46489 1.22242 0.94495 0.88666 1.01352 1.18993 0.93997 1.01442 0.85757 0.87631 1.28619 0.91537 0.91680 0.94497 1.80951 1.10071 1.10778 1.12970 1.19647 0.97684 0.89654 0.97477 1.21023 0.88893 0.97119 1.49489 0.90763 1.24988 0.94686 0.98915 0.94504 1.69904 1.05225 1.28832 1.49543 0.86823 0.80231 0.83626 0.78917 1.20065 1.21303 1.18856 1.21978 0.87754 0.95421 1.00852 0.76744 0.91869 0.91566 0.91047 0.90766 0.94482 0.89525 0.90124 0.92761 0.95642 0.94974 0.92563 0.90395 0.94405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.03 19.25 29.55 0.57 -1.46 16 2 C -0.17 -1.87 12.56 -37.12 -0.47 -2.34 16 3 C 0.02 0.22 2.73 -93.32 -0.25 -0.04 16 4 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 5 C -0.11 -1.03 5.24 -26.61 -0.14 -1.17 16 6 C -0.12 -1.14 6.09 -26.65 -0.16 -1.30 16 7 C 0.05 0.53 5.30 -3.83 -0.02 0.50 16 8 N -0.54 -6.89 4.36 -234.69 -1.02 -7.91 16 9 C 0.06 0.84 4.32 -3.83 -0.02 0.83 16 10 C 0.02 0.35 2.14 -93.41 -0.20 0.15 16 11 H 0.11 1.76 6.23 -51.93 -0.32 1.44 16 12 C 0.25 5.23 13.67 -20.80 -0.28 4.95 16 13 N -0.47 -10.69 18.53 42.11 0.78 -9.91 16 14 C -0.01 -0.12 3.49 -27.88 -0.10 -0.22 16 15 C -0.53 -14.13 9.15 -34.44 -0.32 -14.45 16 16 H 0.07 2.19 7.84 -52.49 -0.41 1.77 16 17 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 18 N -0.90 -26.99 13.96 55.43 0.77 -26.22 16 19 Si 0.88 20.56 27.47 -169.99 -4.67 15.89 16 20 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.26 -5.86 6.54 56.52 0.37 -5.49 16 23 C 0.07 0.77 4.70 -3.84 -0.02 0.75 16 24 H 0.22 1.27 7.80 -54.09 -0.42 0.85 16 25 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 1.04 6.13 -51.93 -0.32 0.72 16 31 H 0.08 1.11 7.98 -51.93 -0.41 0.69 16 32 H 0.05 0.67 8.12 -51.93 -0.42 0.25 16 33 H 0.03 0.55 7.20 -51.93 -0.37 0.18 16 34 H 0.03 0.63 7.57 -51.93 -0.39 0.24 16 35 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.08 0.89 8.01 -51.93 -0.42 0.48 16 37 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 311.37 15.07 4.69 4.69 Total: -1.00 -31.29 311.37 -6.57 -37.85 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -5.62 Total: -2.50 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: -1.50 Total: -11.89 kcal Atomic # 7 Polarization: -44.57 SS G_CDS: 0.53 Total: -44.04 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.67 Total: 15.89 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.29 -6.57 -37.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847030326.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.277 kcal (2) G-P(sol) polarization free energy of solvation -31.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds