Wall clock time and date at job start Mon Mar 30 2020 03:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 H 1.09001 * 109.50168 * 250.33746 * 3 2 1 5 5 C 1.53119 * 109.50194 * 130.26192 * 3 2 1 6 6 C 1.53114 * 109.16060 * 182.40544 * 5 3 2 7 7 C 1.53035 * 109.28054 * 57.65437 * 6 5 3 8 8 N 1.46851 * 109.52351 * 300.82182 * 7 6 5 9 9 C 1.46897 * 111.00369 * 185.84237 * 8 7 6 10 10 C 1.52994 * 109.47245 * 66.04211 * 9 8 7 11 11 H 1.09001 * 109.47277 * 305.00059 * 10 9 8 12 12 C 1.47195 * 109.47236 * 65.00363 * 10 9 8 13 13 N 6.71995 * 152.81475 * 311.51526 * 2 1 3 14 14 C 1.53003 * 109.47175 * 185.00233 * 10 9 8 15 15 C 1.50703 * 109.47391 * 174.99945 * 14 10 9 16 16 H 1.08001 * 119.99724 * 359.97438 * 15 14 10 17 17 C 1.37877 * 120.00047 * 180.02562 * 15 14 10 18 18 N 1.31516 * 119.99865 * 180.02562 * 17 15 14 19 19 Si 1.86796 * 119.99933 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.47286 * 90.00578 * 19 17 15 21 21 H 1.48500 * 109.46796 * 209.99933 * 19 17 15 22 22 H 1.48493 * 109.47439 * 330.00001 * 19 17 15 23 23 C 1.46842 * 111.19620 * 61.73856 * 8 7 6 24 24 H 4.18787 * 15.03152 * 359.97438 * 4 2 1 25 25 H 1.09007 * 109.52052 * 302.31060 * 5 3 2 26 26 H 1.09003 * 109.52571 * 62.43050 * 5 3 2 27 27 H 1.09005 * 109.50171 * 177.59220 * 6 5 3 28 28 H 1.09001 * 109.50663 * 297.70766 * 6 5 3 29 29 H 1.09002 * 109.46556 * 60.83317 * 7 6 5 30 30 H 1.08998 * 109.46761 * 180.80516 * 7 6 5 31 31 H 1.08991 * 109.47370 * 186.04622 * 9 8 7 32 32 H 1.08998 * 109.46835 * 306.04325 * 9 8 7 33 33 H 1.09000 * 109.47556 * 295.00148 * 14 10 9 34 34 H 1.09003 * 109.46845 * 54.99978 * 14 10 9 35 35 H 0.96993 * 120.00098 * 180.02562 * 18 17 15 36 36 H 1.09002 * 109.45960 * 178.24556 * 23 8 7 37 37 H 1.08996 * 109.46282 * 58.27965 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0097 0.3465 0.9676 5 6 3.1567 0.9337 -1.1014 6 6 4.6867 0.8824 -1.1340 7 6 5.1391 -0.5614 -1.3630 8 7 4.6258 -1.4138 -0.2829 9 6 5.1545 -2.7798 -0.3938 10 6 6.6659 -2.7626 -0.1569 11 1 7.1335 -2.0584 -0.8450 12 6 6.9406 -2.3501 1.2292 13 7 7.1516 -2.0349 2.2989 14 6 7.2354 -4.1626 -0.3947 15 6 8.7376 -4.1198 -0.2818 16 1 9.2362 -3.1872 -0.0628 17 6 9.4753 -5.2710 -0.4592 18 7 10.7862 -5.2336 -0.3602 19 14 8.6129 -6.8838 -0.8388 20 1 8.4791 -7.0395 -2.3095 21 1 9.4094 -8.0116 -0.2921 22 1 7.2646 -6.8827 -0.2164 23 6 3.1576 -1.4177 -0.2619 24 1 -1.0500 0.0004 -0.0005 25 1 2.7608 0.6113 -2.0645 26 1 2.8297 1.9530 -0.8960 27 1 5.0547 1.5119 -1.9443 28 1 5.0832 1.2418 -0.1844 29 1 4.7538 -0.9155 -2.3192 30 1 6.2282 -0.6037 -1.3725 31 1 4.6771 -3.4158 0.3516 32 1 4.9474 -3.1697 -1.3903 33 1 6.8345 -4.8495 0.3507 34 1 6.9555 -4.5042 -1.3913 35 1 11.3053 -6.0434 -0.4853 36 1 2.8075 -2.0817 0.5285 37 1 2.7815 -1.7677 -1.2232 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847030326.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:12 Heat of formation + Delta-G solvation = 47.304934 kcal Electronic energy + Delta-G solvation = -17275.032839 eV Core-core repulsion = 14631.404267 eV Total energy + Delta-G solvation = -2643.628573 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.37781 -38.13597 -35.99108 -35.12846 -33.87655 -32.85498 -31.01890 -28.99915 -25.88676 -24.52586 -23.36736 -23.13208 -20.90551 -19.10434 -18.79038 -18.15102 -17.00291 -16.23523 -16.00417 -15.69511 -15.42284 -15.09429 -14.79350 -14.54315 -14.29176 -14.20348 -13.80957 -13.55824 -13.19001 -13.06525 -12.75559 -12.62704 -12.38540 -12.14728 -11.91899 -11.75862 -11.72341 -11.59179 -11.53210 -11.19599 -10.91586 -10.85156 -10.71735 -9.21656 -8.23514 -6.29079 1.43146 1.46582 1.56632 1.87813 1.94408 2.07740 2.15235 2.42119 2.87897 3.12973 3.32779 3.56450 3.88485 3.94565 4.10446 4.11301 4.35090 4.38433 4.46531 4.58974 4.65585 4.70872 4.77151 4.84482 4.91791 5.03644 5.04306 5.13894 5.21371 5.24202 5.29682 5.46004 5.46163 5.64811 6.10086 6.19781 6.28416 6.73452 6.78480 6.92589 7.35407 8.93491 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.034084 B = 0.004817 C = 0.004642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.306662 B = 5811.881337 C = 6030.643656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.211 4.211 3 C 0.022 3.978 4 H 0.086 0.914 5 C -0.103 4.103 6 C -0.113 4.113 7 C 0.044 3.956 8 N -0.556 5.556 9 C 0.070 3.930 10 C 0.025 3.975 11 H 0.115 0.885 12 C 0.264 3.736 13 N -0.516 5.516 14 C -0.003 4.003 15 C -0.530 4.530 16 H 0.029 0.971 17 C 0.003 3.997 18 N -0.954 5.954 19 Si 0.948 3.052 20 H -0.256 1.256 21 H -0.296 1.296 22 H -0.238 1.238 23 C 0.073 3.927 24 H 0.246 0.754 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.027 0.973 34 H 0.062 0.938 35 H 0.265 0.735 36 H 0.073 0.927 37 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.197 8.493 -6.490 23.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.212 4.212 3 C 0.004 3.996 4 H 0.104 0.896 5 C -0.140 4.140 6 C -0.151 4.151 7 C -0.084 4.084 8 N -0.281 5.281 9 C -0.059 4.059 10 C 0.003 3.997 11 H 0.133 0.867 12 C -0.052 4.052 13 N -0.193 5.193 14 C -0.042 4.042 15 C -0.568 4.568 16 H 0.047 0.953 17 C -0.193 4.193 18 N -0.595 5.595 19 Si 0.771 3.229 20 H -0.181 1.181 21 H -0.222 1.222 22 H -0.161 1.161 23 C -0.055 4.055 24 H 0.262 0.738 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.106 0.894 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.045 0.955 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -20.562 9.076 -4.448 22.911 hybrid contribution 0.147 -1.116 -0.832 1.399 sum -20.415 7.960 -5.279 22.539 Atomic orbital electron populations 1.25671 0.96710 0.99217 0.99995 1.23293 0.94740 1.01778 1.01386 1.18260 0.84152 0.96355 1.00857 0.89631 1.21542 0.95584 0.99158 0.97761 1.21573 0.95035 0.95746 1.02748 1.22295 1.00561 0.93375 0.92143 1.61798 1.08014 1.10729 1.47552 1.22110 0.91211 0.89675 1.02855 1.19094 0.97024 0.99559 0.83974 0.86745 1.29328 0.90195 0.90631 0.95026 1.80945 1.11693 1.12136 1.14543 1.19593 0.93730 0.91858 0.99039 1.21392 0.92069 0.95301 1.48079 0.95278 1.26032 0.95259 1.03473 0.94564 1.70088 1.07439 1.30000 1.51973 0.85691 0.79780 0.77652 0.79769 1.18088 1.22241 1.16091 1.21945 0.86583 0.95842 1.01142 0.73792 0.91206 0.90955 0.89369 0.92249 0.93029 0.90619 0.89830 0.90179 0.95467 0.91944 0.92668 0.90858 0.93442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.23 19.25 74.32 1.43 -1.80 16 2 C -0.21 -4.19 12.56 31.13 0.39 -3.80 16 3 C 0.02 0.44 2.73 -12.55 -0.03 0.41 16 4 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 5 C -0.10 -1.74 5.24 30.67 0.16 -1.58 16 6 C -0.11 -2.04 6.09 30.64 0.19 -1.86 16 7 C 0.04 0.90 5.30 86.32 0.46 1.36 16 8 N -0.56 -13.15 4.36 -896.41 -3.90 -17.06 16 9 C 0.07 1.75 4.32 86.30 0.37 2.12 16 10 C 0.03 0.85 2.14 -12.60 -0.03 0.83 16 11 H 0.11 3.69 6.23 -2.39 -0.01 3.68 16 12 C 0.26 10.91 13.67 89.45 1.22 12.13 16 13 N -0.52 -23.82 18.53 19.99 0.37 -23.45 16 14 C 0.00 -0.13 3.49 29.85 0.10 -0.02 16 15 C -0.53 -28.63 9.15 25.60 0.23 -28.39 16 16 H 0.03 1.78 7.84 -2.91 -0.02 1.75 16 17 C 0.00 0.19 5.47 84.65 0.46 0.65 16 18 N -0.95 -59.09 13.96 21.45 0.30 -58.79 16 19 Si 0.95 41.37 27.47 68.60 1.88 43.26 16 20 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 21 H -0.30 -13.26 7.11 99.48 0.71 -12.56 16 22 H -0.24 -9.30 6.54 99.48 0.65 -8.65 16 23 C 0.07 1.49 4.70 86.33 0.41 1.90 16 24 H 0.25 2.02 7.80 -4.42 -0.03 1.98 16 25 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 26 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 28 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.08 1.71 6.13 -2.39 -0.01 1.70 16 31 H 0.08 2.06 7.98 -2.39 -0.02 2.04 16 32 H 0.08 1.63 8.12 -2.39 -0.02 1.61 16 33 H 0.03 1.10 7.20 -2.39 -0.02 1.08 16 34 H 0.06 2.20 7.57 -2.39 -0.02 2.18 16 35 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 36 H 0.07 1.56 8.01 -2.39 -0.02 1.54 16 37 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -69.48 311.37 5.00 -64.49 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: 0.98 Total: 9.61 kcal Atomic # 6 Polarization: -23.42 SS G_CDS: 5.37 Total: -18.05 kcal Atomic # 7 Polarization: -96.07 SS G_CDS: -3.23 Total: -99.30 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 1.88 Total: 43.26 kcal Total: -69.48 5.00 -64.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847030326.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.791 kcal (2) G-P(sol) polarization free energy of solvation -69.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds