Wall clock time and date at job start Mon Mar 30 2020 03:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 H 1.09002 * 109.50415 * 262.71629 * 3 2 1 5 5 C 1.53120 * 109.50710 * 22.79882 * 3 2 1 6 6 C 1.53117 * 109.16154 * 177.63426 * 5 3 2 7 7 C 1.53043 * 109.27894 * 302.34660 * 6 5 3 8 8 N 1.46850 * 109.52224 * 59.17901 * 7 6 5 9 9 C 1.46898 * 110.99372 * 174.16360 * 8 7 6 10 10 C 1.53004 * 109.46602 * 196.06587 * 9 8 7 11 11 H 1.08999 * 109.47126 * 305.06153 * 10 9 8 12 12 C 1.47204 * 109.46953 * 65.06441 * 10 9 8 13 13 N 6.35390 * 144.62240 * 202.68147 * 2 1 3 14 14 C 1.53000 * 109.47050 * 185.06426 * 10 9 8 15 15 C 1.50700 * 109.47406 * 175.00272 * 14 10 9 16 16 H 1.08002 * 119.99636 * 359.97438 * 15 14 10 17 17 C 1.37868 * 120.00391 * 180.02562 * 15 14 10 18 18 N 1.31519 * 120.00223 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00228 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47009 * 60.00381 * 19 17 15 21 21 H 1.48504 * 109.47315 * 179.97438 * 19 17 15 22 22 H 1.48492 * 109.47530 * 300.00607 * 19 17 15 23 23 C 1.46847 * 111.19537 * 298.25614 * 8 7 6 24 24 H 4.18789 * 15.03097 * 359.97438 * 4 2 1 25 25 H 1.08996 * 109.52091 * 297.53582 * 5 3 2 26 26 H 1.08998 * 109.52004 * 57.66568 * 5 3 2 27 27 H 1.08996 * 109.50349 * 62.28466 * 6 5 3 28 28 H 1.09002 * 109.50336 * 182.40494 * 6 5 3 29 29 H 1.08995 * 109.46122 * 179.19830 * 7 6 5 30 30 H 1.09004 * 109.45662 * 299.17586 * 7 6 5 31 31 H 1.08994 * 109.47601 * 316.06037 * 9 8 7 32 32 H 1.08996 * 109.47497 * 76.07250 * 9 8 7 33 33 H 1.09003 * 109.47133 * 294.99939 * 14 10 9 34 34 H 1.09001 * 109.47053 * 54.99996 * 14 10 9 35 35 H 0.96998 * 120.00015 * 180.02562 * 18 17 15 36 36 H 1.08997 * 109.46427 * 301.73068 * 23 8 7 37 37 H 1.09006 * 109.45889 * 181.76161 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0098 0.1311 1.0192 5 6 3.1579 -1.3297 -0.5593 6 6 4.6878 -1.2977 -0.6109 7 6 5.1399 -0.1137 -1.4688 8 7 4.6255 1.1350 -0.8919 9 6 5.1536 2.3030 -1.6093 10 6 4.9368 3.5607 -0.7654 11 1 3.8811 3.6482 -0.5084 12 6 5.7360 3.4683 0.4673 13 7 6.3546 3.3942 1.4185 14 6 5.3709 4.7916 -1.5637 15 6 5.0442 6.0381 -0.7823 16 1 4.5735 5.9601 0.1866 17 6 5.3451 7.2780 -1.3047 18 7 5.9170 7.3730 -2.4853 19 14 4.9394 8.8230 -0.3365 20 1 5.6593 8.7967 0.9622 21 1 5.3609 10.0178 -1.1112 22 1 3.4763 8.8830 -0.0902 23 6 3.1572 1.1470 -0.8756 24 1 -1.0500 0.0005 -0.0002 25 1 2.8322 -2.1455 0.0860 26 1 2.7616 -1.4791 -1.5636 27 1 5.0838 -1.1877 0.3986 28 1 5.0567 -2.2256 -1.0480 29 1 6.2289 -0.0797 -1.4959 30 1 4.7548 -0.2313 -2.4817 31 1 6.2197 2.1666 -1.7907 32 1 4.6339 2.4103 -2.5613 33 1 6.4450 4.7472 -1.7444 34 1 4.8427 4.8113 -2.5169 35 1 6.1290 8.2453 -2.8526 36 1 2.7817 1.0234 -1.8914 37 1 2.8062 2.0968 -0.4718 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847030329.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:16 Heat of formation + Delta-G solvation = 61.306665 kcal Electronic energy + Delta-G solvation = -17295.524969 eV Core-core repulsion = 14652.503557 eV Total energy + Delta-G solvation = -2643.021412 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.35550 -36.53282 -34.58318 -33.57319 -32.68471 -31.03905 -30.16370 -26.96980 -24.52042 -23.72912 -22.22540 -21.59350 -20.00295 -18.16674 -16.69827 -16.49076 -15.74684 -14.94287 -14.73464 -14.59341 -14.44851 -13.84579 -13.54193 -13.08604 -12.84930 -12.46549 -12.27607 -11.93834 -11.77999 -11.59717 -11.24133 -11.13364 -11.05365 -10.93343 -10.79977 -10.62900 -10.53498 -10.19725 -10.10526 -9.97015 -9.50911 -9.21713 -8.44273 -8.21289 -6.08456 -4.11553 2.74965 2.80315 3.32235 3.36329 3.40258 3.74598 3.84247 3.91683 4.35357 4.43545 4.77118 4.81816 4.92186 4.93269 5.18339 5.29496 5.29682 5.48320 5.52184 5.55129 5.59790 5.76720 5.78944 5.92700 5.95322 5.99858 6.03050 6.09688 6.26146 6.38602 6.52164 7.16045 7.17268 7.43513 7.53985 7.57810 7.86699 8.24522 8.61858 8.92943 9.53875 11.02425 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.026406 B = 0.005141 C = 0.004770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.129175 B = 5445.470241 C = 5868.585261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.174 4.174 3 C 0.021 3.979 4 H 0.100 0.900 5 C -0.109 4.109 6 C -0.116 4.116 7 C 0.054 3.946 8 N -0.542 5.542 9 C 0.064 3.936 10 C 0.011 3.989 11 H 0.099 0.901 12 C 0.257 3.743 13 N -0.481 5.481 14 C 0.031 3.969 15 C -0.526 4.526 16 H 0.056 0.944 17 C 0.063 3.937 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.275 1.275 23 C 0.062 3.938 24 H 0.216 0.784 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.034 0.966 31 H 0.081 0.919 32 H 0.056 0.944 33 H 0.026 0.974 34 H 0.037 0.963 35 H 0.263 0.737 36 H 0.040 0.960 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.078 -16.563 -0.721 18.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.174 4.174 3 C 0.003 3.997 4 H 0.118 0.882 5 C -0.147 4.147 6 C -0.154 4.154 7 C -0.074 4.074 8 N -0.266 5.266 9 C -0.065 4.065 10 C -0.011 4.011 11 H 0.117 0.883 12 C -0.059 4.059 13 N -0.158 5.158 14 C -0.007 4.007 15 C -0.564 4.564 16 H 0.074 0.926 17 C -0.139 4.139 18 N -0.531 5.531 19 Si 0.719 3.281 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.201 1.201 23 C -0.066 4.066 24 H 0.233 0.767 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.053 0.947 31 H 0.099 0.901 32 H 0.074 0.926 33 H 0.044 0.956 34 H 0.055 0.945 35 H 0.072 0.928 36 H 0.058 0.942 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.891 -16.520 1.056 17.571 hybrid contribution -0.969 1.006 -0.701 1.563 sum -6.860 -15.514 0.355 16.967 Atomic orbital electron populations 1.24857 0.95859 1.00837 1.01478 1.23026 0.94197 1.00233 0.99968 1.18334 0.83895 0.95878 1.01640 0.88225 1.21581 0.95926 0.95991 1.01210 1.21593 0.94937 0.97471 1.01416 1.22107 1.00171 0.89328 0.95777 1.61892 1.07318 1.02353 1.55038 1.22226 1.00845 0.88372 0.95038 1.19237 0.97820 0.96808 0.87250 0.88323 1.28885 0.92893 0.90347 0.93813 1.81024 1.10981 1.11436 1.12358 1.19171 0.97753 0.88805 0.94989 1.21102 1.40585 0.90783 1.03952 0.92567 1.24942 0.94884 0.99157 0.94920 1.69929 1.41780 1.24607 1.16775 0.86658 0.78926 0.82390 0.80133 1.20210 1.21193 1.20067 1.22095 0.87657 0.98601 0.98211 0.76736 0.91620 0.91859 0.90836 0.91303 0.90514 0.94750 0.90095 0.92630 0.95558 0.94490 0.92759 0.94224 0.89599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.26 19.25 29.55 0.57 -1.69 16 2 C -0.17 -2.07 12.56 -37.12 -0.47 -2.54 16 3 C 0.02 0.24 2.73 -93.32 -0.25 -0.01 16 4 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 5 C -0.11 -1.06 5.24 -26.61 -0.14 -1.20 16 6 C -0.12 -1.11 6.09 -26.65 -0.16 -1.28 16 7 C 0.05 0.60 5.44 -3.83 -0.02 0.58 16 8 N -0.54 -7.25 4.31 -234.66 -1.01 -8.26 16 9 C 0.06 0.94 4.34 -3.82 -0.02 0.93 16 10 C 0.01 0.20 2.23 -93.40 -0.21 -0.01 16 11 H 0.10 1.75 6.49 -51.93 -0.34 1.41 16 12 C 0.26 5.42 13.67 -20.72 -0.28 5.14 16 13 N -0.48 -10.99 18.54 42.20 0.78 -10.21 16 14 C 0.03 0.73 4.42 -27.88 -0.12 0.61 16 15 C -0.53 -14.06 8.60 -34.44 -0.30 -14.36 16 16 H 0.06 1.50 7.59 -52.49 -0.40 1.10 16 17 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 18 N -0.89 -25.57 13.29 55.43 0.74 -24.83 16 19 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 23 C 0.06 0.79 4.54 -3.83 -0.02 0.77 16 24 H 0.22 1.52 7.80 -54.09 -0.42 1.10 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.83 7.96 -51.93 -0.41 0.42 16 30 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 1.19 7.87 -51.93 -0.41 0.78 16 32 H 0.06 0.77 8.05 -51.93 -0.42 0.35 16 33 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 36 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.09 1.16 6.42 -51.93 -0.33 0.83 16 LS Contribution 315.35 15.07 4.75 4.75 Total: -1.00 -30.28 315.35 -6.95 -37.23 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: -5.67 Total: -3.62 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: -1.52 Total: -11.43 kcal Atomic # 7 Polarization: -43.80 SS G_CDS: 0.51 Total: -43.30 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.28 -6.95 -37.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847030329.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.532 kcal (2) G-P(sol) polarization free energy of solvation -30.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds