Wall clock time and date at job start Mon Mar 30 2020 03:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 H 1.08998 * 109.49732 * 89.37650 * 3 2 1 5 5 C 1.53120 * 109.50295 * 209.45322 * 3 2 1 6 6 C 1.53119 * 109.21327 * 177.60607 * 5 3 2 7 7 C 1.53049 * 109.27131 * 302.43679 * 6 5 3 8 8 N 1.46848 * 109.57137 * 59.08739 * 7 6 5 9 9 C 1.46899 * 110.99936 * 174.19214 * 8 7 6 10 10 C 1.53001 * 109.47057 * 308.00273 * 9 8 7 11 11 H 1.09006 * 109.47271 * 58.19348 * 10 9 8 12 12 C 1.47197 * 109.47510 * 298.19732 * 10 9 8 13 13 N 6.90885 * 160.24602 * 24.68585 * 2 1 3 14 14 C 1.53004 * 109.47352 * 178.19613 * 10 9 8 15 15 C 1.50701 * 109.46968 * 185.00216 * 14 10 9 16 16 H 1.08002 * 120.00461 * 359.97438 * 15 14 10 17 17 C 1.37877 * 119.99784 * 180.02562 * 15 14 10 18 18 N 1.31512 * 120.00116 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00089 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46916 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47245 * 119.99339 * 19 17 15 22 22 H 1.48492 * 109.47059 * 239.99823 * 19 17 15 23 23 C 1.46846 * 111.20102 * 298.28521 * 8 7 6 24 24 H 4.18783 * 15.03116 * 0.02562 * 4 2 1 25 25 H 1.08998 * 109.52383 * 297.54275 * 5 3 2 26 26 H 1.09001 * 109.51969 * 57.66561 * 5 3 2 27 27 H 1.08989 * 109.50445 * 62.31365 * 6 5 3 28 28 H 1.08995 * 109.50231 * 182.44123 * 6 5 3 29 29 H 1.08999 * 109.41507 * 299.07099 * 7 6 5 30 30 H 1.08997 * 109.45126 * 179.12516 * 7 6 5 31 31 H 1.09002 * 109.47608 * 68.00173 * 9 8 7 32 32 H 1.08995 * 109.47399 * 188.00754 * 9 8 7 33 33 H 1.09000 * 109.46748 * 304.99682 * 14 10 9 34 34 H 1.08987 * 109.47037 * 65.00166 * 14 10 9 35 35 H 0.96996 * 120.00069 * 180.02562 * 18 17 15 36 36 H 1.09004 * 109.46058 * 301.73193 * 23 8 7 37 37 H 1.08995 * 109.46634 * 181.75908 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0098 -0.0104 -1.0274 5 6 3.1567 1.2577 0.7097 6 6 4.6867 1.2223 0.7587 7 6 5.1398 -0.0535 1.4723 8 7 4.6266 -1.2274 0.7546 9 6 5.1558 -2.4702 1.3318 10 6 6.6808 -2.3825 1.4205 11 1 6.9605 -1.5212 2.0272 12 6 7.2432 -2.2336 0.0684 13 7 7.6763 -2.1217 -0.9752 14 6 7.2286 -3.6585 2.0630 15 6 8.7160 -3.5217 2.2627 16 1 9.2203 -2.6155 1.9611 17 6 9.4333 -4.5538 2.8295 18 7 8.8193 -5.6575 3.1962 19 14 11.2771 -4.3845 3.0764 20 1 11.7225 -3.0559 2.5847 21 1 11.5966 -4.5095 4.5213 22 1 11.9779 -5.4532 2.3202 23 6 3.1583 -1.2390 0.7368 24 1 -1.0500 0.0005 0.0001 25 1 2.8301 2.1425 0.1634 26 1 2.7603 1.2894 1.7246 27 1 5.0835 1.2310 -0.2563 28 1 5.0536 2.0936 1.3011 29 1 4.7549 -0.0545 2.4921 30 1 6.2290 -0.0894 1.4951 31 1 4.7415 -2.6127 2.3298 32 1 4.8767 -3.3125 0.6988 33 1 6.7455 -3.8159 3.0273 34 1 7.0261 -4.5088 1.4120 35 1 9.3239 -6.3834 3.5953 36 1 2.7827 -1.2343 1.7601 37 1 2.8083 -2.1357 0.2257 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847030330.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:17 Heat of formation + Delta-G solvation = 64.272212 kcal Electronic energy + Delta-G solvation = -17269.469115 eV Core-core repulsion = 14626.576298 eV Total energy + Delta-G solvation = -2642.892816 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.41669 -36.63847 -34.62677 -33.51426 -32.64677 -31.25136 -30.07543 -26.95749 -24.74116 -23.55925 -22.26742 -21.61837 -20.01095 -18.20829 -16.62868 -16.53896 -15.76776 -15.13858 -14.67566 -14.55403 -14.40240 -13.88964 -13.61260 -13.12923 -12.77583 -12.52174 -12.26980 -11.98485 -11.84601 -11.55587 -11.32279 -11.14342 -11.07114 -10.89453 -10.81815 -10.63342 -10.54881 -10.20887 -10.09124 -10.00916 -9.53717 -9.20573 -8.46885 -8.19908 -6.10477 -4.13665 2.66982 2.72319 3.27943 3.36318 3.40713 3.72682 3.81015 3.89138 4.33247 4.41050 4.75957 4.81178 4.91134 4.95334 5.17209 5.27754 5.28168 5.48608 5.50804 5.56157 5.59849 5.73828 5.84419 5.90855 5.92797 5.97106 6.03165 6.10804 6.29335 6.38492 6.49474 7.14805 7.18009 7.41778 7.49650 7.51981 7.84818 8.22056 8.58010 8.91268 9.51982 11.00482 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.039961 B = 0.004529 C = 0.004381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.508192 B = 6180.644378 C = 6390.357394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.172 4.172 3 C 0.020 3.980 4 H 0.100 0.900 5 C -0.109 4.109 6 C -0.117 4.117 7 C 0.044 3.956 8 N -0.541 5.541 9 C 0.064 3.936 10 C 0.005 3.995 11 H 0.102 0.898 12 C 0.255 3.745 13 N -0.476 5.476 14 C 0.031 3.969 15 C -0.526 4.526 16 H 0.057 0.943 17 C 0.062 3.938 18 N -0.891 5.891 19 Si 0.891 3.109 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.283 1.283 23 C 0.068 3.932 24 H 0.216 0.784 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.038 0.962 30 H 0.086 0.914 31 H 0.053 0.947 32 H 0.082 0.918 33 H 0.037 0.963 34 H 0.027 0.973 35 H 0.262 0.738 36 H 0.038 0.962 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.014 11.424 -1.317 18.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.173 4.173 3 C 0.002 3.998 4 H 0.118 0.882 5 C -0.147 4.147 6 C -0.154 4.154 7 C -0.084 4.084 8 N -0.265 5.265 9 C -0.065 4.065 10 C -0.017 4.017 11 H 0.120 0.880 12 C -0.062 4.062 13 N -0.153 5.153 14 C -0.008 4.008 15 C -0.564 4.564 16 H 0.076 0.924 17 C -0.140 4.140 18 N -0.530 5.530 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.210 1.210 23 C -0.060 4.060 24 H 0.232 0.768 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.056 0.944 30 H 0.104 0.896 31 H 0.071 0.929 32 H 0.101 0.899 33 H 0.056 0.944 34 H 0.045 0.955 35 H 0.072 0.928 36 H 0.056 0.944 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.149 11.451 -3.291 17.744 hybrid contribution 0.359 -0.197 1.413 1.471 sum -12.790 11.254 -1.878 17.139 Atomic orbital electron populations 1.24856 0.95853 1.00939 1.01653 1.23077 0.94227 1.00141 0.99829 1.18344 0.83747 0.95980 1.01714 0.88212 1.21586 0.96143 0.96449 1.00518 1.21596 0.94653 0.97181 1.02004 1.22271 1.01213 0.89796 0.95124 1.61945 1.06860 1.02802 1.54920 1.22236 0.93824 0.91525 0.98866 1.19349 0.91982 1.04406 0.85940 0.88030 1.28778 0.91750 0.91541 0.94165 1.80956 1.10697 1.10517 1.13133 1.19179 0.96248 0.89243 0.96103 1.21173 0.92577 1.01794 1.40839 0.92446 1.24953 0.98547 0.95171 0.95295 1.69945 1.35908 1.05462 1.41681 0.86540 0.85477 0.78308 0.77792 1.19655 1.20864 1.20952 1.21976 0.87839 0.97319 0.98913 0.76752 0.91634 0.91835 0.90903 0.91123 0.94410 0.89555 0.92867 0.89934 0.94436 0.95485 0.92841 0.94352 0.90345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.09 19.25 29.55 0.57 -1.52 16 2 C -0.17 -1.91 12.57 -37.12 -0.47 -2.38 16 3 C 0.02 0.23 2.73 -93.32 -0.25 -0.03 16 4 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 5 C -0.11 -1.08 5.24 -26.61 -0.14 -1.22 16 6 C -0.12 -1.22 6.10 -26.64 -0.16 -1.38 16 7 C 0.04 0.53 5.03 -3.83 -0.02 0.51 16 8 N -0.54 -7.30 4.38 -234.67 -1.03 -8.32 16 9 C 0.06 0.95 4.52 -3.82 -0.02 0.93 16 10 C 0.00 0.09 1.75 -93.41 -0.16 -0.07 16 11 H 0.10 1.72 6.08 -51.93 -0.32 1.41 16 12 C 0.25 5.27 13.44 -20.78 -0.28 5.00 16 13 N -0.48 -10.73 18.53 42.13 0.78 -9.95 16 14 C 0.03 0.71 4.42 -27.88 -0.12 0.59 16 15 C -0.53 -13.91 8.60 -34.44 -0.30 -14.20 16 16 H 0.06 1.51 7.59 -52.49 -0.40 1.12 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -25.43 13.29 55.43 0.74 -24.69 16 19 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 20 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 C 0.07 0.80 4.70 -3.84 -0.02 0.78 16 24 H 0.22 1.32 7.80 -54.09 -0.42 0.90 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.83 8.14 -51.94 -0.42 0.41 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.09 1.14 5.70 -51.93 -0.30 0.85 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.03 0.67 8.14 -51.94 -0.42 0.25 16 35 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 36 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.93 8.12 -51.93 -0.42 0.50 16 LS Contribution 314.02 15.07 4.73 4.73 Total: -1.00 -30.01 314.02 -6.91 -36.92 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: -5.64 Total: -3.48 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: -1.47 Total: -11.38 kcal Atomic # 7 Polarization: -43.46 SS G_CDS: 0.49 Total: -42.97 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.01 -6.91 -36.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847030330.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.190 kcal (2) G-P(sol) polarization free energy of solvation -30.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds