Wall clock time and date at job start Mon Mar 30 2020 03:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 H 1.08998 * 109.49732 * 89.37650 * 3 2 1 5 5 C 1.53120 * 109.50295 * 209.45322 * 3 2 1 6 6 C 1.53119 * 109.21327 * 177.60607 * 5 3 2 7 7 C 1.53049 * 109.27131 * 302.43679 * 6 5 3 8 8 N 1.46848 * 109.57137 * 59.08739 * 7 6 5 9 9 C 1.46899 * 110.99936 * 174.19214 * 8 7 6 10 10 C 1.53001 * 109.47057 * 308.00273 * 9 8 7 11 11 H 1.09006 * 109.47271 * 58.19348 * 10 9 8 12 12 C 1.47197 * 109.47510 * 298.19732 * 10 9 8 13 13 N 6.90885 * 160.24602 * 24.68585 * 2 1 3 14 14 C 1.53004 * 109.47352 * 178.19613 * 10 9 8 15 15 C 1.50701 * 109.46968 * 185.00216 * 14 10 9 16 16 H 1.08002 * 120.00461 * 359.97438 * 15 14 10 17 17 C 1.37877 * 119.99784 * 180.02562 * 15 14 10 18 18 N 1.31512 * 120.00116 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00089 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46916 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47245 * 119.99339 * 19 17 15 22 22 H 1.48492 * 109.47059 * 239.99823 * 19 17 15 23 23 C 1.46846 * 111.20102 * 298.28521 * 8 7 6 24 24 H 4.18783 * 15.03116 * 0.02562 * 4 2 1 25 25 H 1.08998 * 109.52383 * 297.54275 * 5 3 2 26 26 H 1.09001 * 109.51969 * 57.66561 * 5 3 2 27 27 H 1.08989 * 109.50445 * 62.31365 * 6 5 3 28 28 H 1.08995 * 109.50231 * 182.44123 * 6 5 3 29 29 H 1.08999 * 109.41507 * 299.07099 * 7 6 5 30 30 H 1.08997 * 109.45126 * 179.12516 * 7 6 5 31 31 H 1.09002 * 109.47608 * 68.00173 * 9 8 7 32 32 H 1.08995 * 109.47399 * 188.00754 * 9 8 7 33 33 H 1.09000 * 109.46748 * 304.99682 * 14 10 9 34 34 H 1.08987 * 109.47037 * 65.00166 * 14 10 9 35 35 H 0.96996 * 120.00069 * 180.02562 * 18 17 15 36 36 H 1.09004 * 109.46058 * 301.73193 * 23 8 7 37 37 H 1.08995 * 109.46634 * 181.75908 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0098 -0.0104 -1.0274 5 6 3.1567 1.2577 0.7097 6 6 4.6867 1.2223 0.7587 7 6 5.1398 -0.0535 1.4723 8 7 4.6266 -1.2274 0.7546 9 6 5.1558 -2.4702 1.3318 10 6 6.6808 -2.3825 1.4205 11 1 6.9605 -1.5212 2.0272 12 6 7.2432 -2.2336 0.0684 13 7 7.6763 -2.1217 -0.9752 14 6 7.2286 -3.6585 2.0630 15 6 8.7160 -3.5217 2.2627 16 1 9.2203 -2.6155 1.9611 17 6 9.4333 -4.5538 2.8295 18 7 8.8193 -5.6575 3.1962 19 14 11.2771 -4.3845 3.0764 20 1 11.7225 -3.0559 2.5847 21 1 11.5966 -4.5095 4.5213 22 1 11.9779 -5.4532 2.3202 23 6 3.1583 -1.2390 0.7368 24 1 -1.0500 0.0005 0.0001 25 1 2.8301 2.1425 0.1634 26 1 2.7603 1.2894 1.7246 27 1 5.0835 1.2310 -0.2563 28 1 5.0536 2.0936 1.3011 29 1 4.7549 -0.0545 2.4921 30 1 6.2290 -0.0894 1.4951 31 1 4.7415 -2.6127 2.3298 32 1 4.8767 -3.3125 0.6988 33 1 6.7455 -3.8159 3.0273 34 1 7.0261 -4.5088 1.4120 35 1 9.3239 -6.3834 3.5953 36 1 2.7827 -1.2343 1.7601 37 1 2.8083 -2.1357 0.2257 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847030330.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:17 Heat of formation + Delta-G solvation = 47.500247 kcal Electronic energy + Delta-G solvation = -17270.196402 eV Core-core repulsion = 14626.576298 eV Total energy + Delta-G solvation = -2643.620103 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.44242 -38.10293 -35.97909 -35.18530 -33.79915 -32.69531 -30.99305 -28.59431 -26.01245 -24.65953 -23.61756 -23.10830 -20.93491 -19.04221 -18.45122 -18.08382 -16.99100 -16.46414 -16.05326 -15.71453 -15.40016 -14.94800 -14.86112 -14.41875 -14.31103 -14.02620 -13.71005 -13.47546 -13.12359 -13.02774 -12.78629 -12.63892 -12.50523 -12.35869 -12.15506 -11.83463 -11.72793 -11.54532 -11.36952 -11.14244 -10.90056 -10.84153 -10.55167 -9.23252 -8.19286 -6.27555 1.39637 1.42863 1.53142 1.88212 1.95002 2.07108 2.14108 2.41863 2.88226 3.16372 3.33528 3.56632 3.88039 3.95759 4.09228 4.09707 4.32839 4.37734 4.46013 4.58907 4.69245 4.71754 4.79440 4.85705 4.98739 5.02875 5.04092 5.13202 5.21750 5.28877 5.44979 5.46646 5.61155 5.79147 6.05714 6.17905 6.21974 6.74067 6.83397 6.93315 7.41228 8.91920 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.039961 B = 0.004529 C = 0.004381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.508192 B = 6180.644378 C = 6390.357394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.212 4.212 3 C 0.024 3.976 4 H 0.089 0.911 5 C -0.103 4.103 6 C -0.112 4.112 7 C 0.040 3.960 8 N -0.552 5.552 9 C 0.073 3.927 10 C 0.017 3.983 11 H 0.121 0.879 12 C 0.265 3.735 13 N -0.510 5.510 14 C 0.037 3.963 15 C -0.538 4.538 16 H 0.055 0.945 17 C 0.011 3.989 18 N -0.924 5.924 19 Si 0.949 3.051 20 H -0.268 1.268 21 H -0.273 1.273 22 H -0.286 1.286 23 C 0.071 3.929 24 H 0.246 0.754 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.088 0.912 29 H 0.049 0.951 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.035 0.965 34 H 0.001 0.999 35 H 0.264 0.736 36 H 0.044 0.956 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.917 12.748 -0.729 19.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.212 4.212 3 C 0.005 3.995 4 H 0.107 0.893 5 C -0.141 4.141 6 C -0.149 4.149 7 C -0.088 4.088 8 N -0.276 5.276 9 C -0.056 4.056 10 C -0.005 4.005 11 H 0.138 0.862 12 C -0.051 4.051 13 N -0.187 5.187 14 C -0.002 4.002 15 C -0.576 4.576 16 H 0.073 0.927 17 C -0.187 4.187 18 N -0.564 5.564 19 Si 0.774 3.226 20 H -0.193 1.193 21 H -0.198 1.198 22 H -0.212 1.212 23 C -0.057 4.057 24 H 0.262 0.738 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.107 0.893 29 H 0.067 0.933 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.053 0.947 34 H 0.020 0.980 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.058 12.791 -2.705 19.198 hybrid contribution 0.574 -0.605 1.214 1.473 sum -13.484 12.186 -1.492 18.235 Atomic orbital electron populations 1.25673 0.96702 0.99235 0.99909 1.23277 0.94716 1.01758 1.01457 1.18244 0.84184 0.95997 1.01064 0.89314 1.21544 0.95486 0.96271 1.00767 1.21568 0.95134 0.96941 1.01302 1.22335 1.00504 0.90003 0.95911 1.61910 1.08041 1.02464 1.55230 1.22063 0.91272 0.92381 0.99853 1.19295 0.94084 1.02647 0.84459 0.86191 1.29232 0.90874 0.90569 0.94416 1.80952 1.11882 1.11592 1.14304 1.19000 0.94843 0.90563 0.95758 1.21571 0.94427 1.01510 1.40071 0.92704 1.25712 1.02575 0.95075 0.95383 1.70037 1.37427 1.06171 1.42731 0.85639 0.80729 0.78107 0.78079 1.19274 1.19796 1.21186 1.21967 0.86579 0.97812 0.99343 0.73759 0.90703 0.91333 0.92139 0.89308 0.93273 0.90747 0.91278 0.90471 0.94652 0.98040 0.92718 0.93762 0.90740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.36 19.25 74.32 1.43 -1.93 16 2 C -0.21 -4.36 12.57 31.13 0.39 -3.96 16 3 C 0.02 0.49 2.73 -12.55 -0.03 0.46 16 4 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 5 C -0.10 -1.84 5.24 30.67 0.16 -1.68 16 6 C -0.11 -2.15 6.10 30.65 0.19 -1.96 16 7 C 0.04 0.91 5.03 86.33 0.43 1.34 16 8 N -0.55 -14.28 4.38 -896.35 -3.92 -18.21 16 9 C 0.07 2.11 4.52 86.30 0.39 2.50 16 10 C 0.02 0.60 1.75 -12.60 -0.02 0.58 16 11 H 0.12 3.91 6.08 -2.38 -0.01 3.90 16 12 C 0.27 10.95 13.44 89.45 1.20 12.16 16 13 N -0.51 -23.03 18.53 20.00 0.37 -22.66 16 14 C 0.04 1.71 4.42 29.85 0.13 1.84 16 15 C -0.54 -28.39 8.60 25.60 0.22 -28.17 16 16 H 0.05 2.87 7.59 -2.91 -0.02 2.84 16 17 C 0.01 0.63 5.46 84.66 0.46 1.09 16 18 N -0.92 -52.97 13.29 21.45 0.28 -52.69 16 19 Si 0.95 43.30 29.54 68.60 2.03 45.32 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 21 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 22 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 23 C 0.07 1.59 4.70 86.33 0.41 1.99 16 24 H 0.25 2.17 7.80 -4.42 -0.03 2.14 16 25 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.07 1.86 5.70 -2.39 -0.01 1.85 16 31 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 35 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 36 H 0.04 0.94 8.14 -2.38 -0.02 0.93 16 37 H 0.07 1.71 8.12 -2.39 -0.02 1.69 16 Total: -1.00 -63.36 314.02 5.15 -58.21 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: 1.03 Total: 5.77 kcal Atomic # 6 Polarization: -21.11 SS G_CDS: 5.36 Total: -15.75 kcal Atomic # 7 Polarization: -90.28 SS G_CDS: -3.27 Total: -93.55 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Total: -63.36 5.15 -58.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847030330.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.708 kcal (2) G-P(sol) polarization free energy of solvation -63.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds