Wall clock time and date at job start Mon Mar 30 2020 03:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30798 * 1 3 3 Si 1.86800 * 120.00292 * 2 1 4 4 H 1.48507 * 109.46912 * 274.98472 * 3 2 1 5 5 H 1.48500 * 109.47098 * 34.97634 * 3 2 1 6 6 H 1.48497 * 109.47243 * 154.98549 * 3 2 1 7 7 C 1.40122 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00546 * 186.04985 * 7 2 1 9 9 C 1.39703 * 120.00061 * 6.05562 * 7 2 1 10 10 N 1.33135 * 126.58148 * 354.45793 * 9 7 2 11 11 N 1.28505 * 109.79392 * 180.02562 * 10 9 7 12 12 C 1.32361 * 110.27131 * 359.97438 * 11 10 9 13 13 S 1.76205 * 126.26518 * 180.02562 * 12 11 10 14 14 N 1.36868 * 107.47052 * 0.26332 * 12 11 10 15 15 C 1.40114 * 127.18566 * 179.72287 * 14 12 11 16 16 C 1.38852 * 120.06165 * 244.74356 * 15 14 12 17 17 C 1.38115 * 119.93012 * 179.76892 * 16 15 14 18 18 C 1.38289 * 120.06348 * 0.50981 * 17 16 15 19 19 C 1.38275 * 120.13942 * 359.74467 * 18 17 16 20 20 C 1.38117 * 120.06911 * 0.02562 * 19 18 17 21 21 H 0.96999 * 119.99836 * 0.02562 * 1 2 3 22 22 H 1.40994 * 100.00415 * 90.01990 * 13 12 11 23 23 H 1.07999 * 120.03781 * 0.02562 * 16 15 14 24 24 H 1.08002 * 119.97346 * 180.23311 * 17 16 15 25 25 H 1.08001 * 119.92952 * 179.77044 * 18 17 16 26 26 H 1.08000 * 119.97078 * 179.97438 * 19 18 17 27 27 H 1.07993 * 120.03860 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 2.3842 2.1072 -1.3949 5 1 1.4961 2.6200 0.8026 6 1 3.5883 1.4120 0.5920 7 6 2.0086 -1.2135 0.0005 8 1 3.0841 -1.2162 0.0991 9 6 1.3159 -2.4200 -0.1266 10 7 -0.0059 -2.5772 -0.1524 11 7 -0.2936 -3.8231 -0.2799 12 6 0.8138 -4.5452 -0.3446 13 16 0.9078 -6.2959 -0.5208 14 7 1.8726 -3.6836 -0.2443 15 6 3.2349 -4.0107 -0.2598 16 6 4.0170 -3.7860 0.8653 17 6 5.3586 -4.1138 0.8486 18 6 5.9253 -4.6555 -0.2906 19 6 5.1502 -4.8755 -1.4143 20 6 3.8070 -4.5541 -1.4023 21 1 -0.4850 0.8400 -0.0004 22 1 0.9316 -6.3997 -1.9267 23 1 3.5759 -3.3593 1.7539 24 1 5.9668 -3.9429 1.7247 25 1 6.9754 -4.9076 -0.3025 26 1 5.5957 -5.2982 -2.3027 27 1 3.2020 -4.7265 -2.2801 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006534206.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:07 Heat of formation + Delta-G solvation = 100.108217 kcal Electronic energy + Delta-G solvation = -15186.319468 eV Core-core repulsion = 12650.641389 eV Total energy + Delta-G solvation = -2535.678079 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 247.047 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.95752 -38.58967 -33.90693 -33.59015 -30.72773 -29.51183 -28.86154 -25.89803 -22.87216 -22.43065 -20.82058 -20.45355 -18.23812 -16.76317 -16.41774 -15.87312 -15.25533 -14.99523 -14.14246 -13.74858 -13.46088 -13.39649 -13.17377 -12.40673 -11.71585 -11.56470 -11.44467 -11.12359 -11.03650 -10.76664 -10.50910 -9.88527 -9.62756 -9.36059 -8.87026 -8.69548 -8.16188 -7.88469 -7.57227 -6.85124 -4.83975 1.50902 1.63666 2.06965 2.64421 2.93066 2.97732 3.02554 3.43005 3.73754 3.99503 4.02681 4.29251 5.09352 5.14973 5.20562 5.32192 5.65216 5.79452 5.92775 6.23362 6.53428 6.67470 6.69282 6.71053 6.79322 7.01893 7.10901 7.34572 7.78795 8.01057 8.48755 8.70278 10.05374 10.40425 Molecular weight = 247.05amu Principal moments of inertia in cm(-1) A = 0.019247 B = 0.010045 C = 0.007034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.446168 B = 2786.808973 C = 3979.745476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.723 5.723 2 C 0.076 3.924 3 Si 0.924 3.076 4 H -0.267 1.267 5 H -0.272 1.272 6 H -0.259 1.259 7 C -0.428 4.428 8 H 0.090 0.910 9 C 0.355 3.645 10 N -0.331 5.331 11 N -0.224 5.224 12 C 0.029 3.971 13 S -0.043 6.043 14 N -0.483 5.483 15 C 0.177 3.823 16 C -0.110 4.110 17 C -0.109 4.109 18 C -0.130 4.130 19 C -0.110 4.110 20 C -0.117 4.117 21 H 0.284 0.716 22 H 0.064 0.936 23 H 0.127 0.873 24 H 0.124 0.876 25 H 0.120 0.880 26 H 0.122 0.878 27 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.600 -4.567 -0.743 11.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.345 5.345 2 C -0.152 4.152 3 Si 0.747 3.253 4 H -0.192 1.192 5 H -0.197 1.197 6 H -0.183 1.183 7 C -0.467 4.467 8 H 0.108 0.892 9 C 0.117 3.883 10 N -0.183 5.183 11 N -0.072 5.072 12 C -0.339 4.339 13 S 0.107 5.893 14 N -0.184 5.184 15 C 0.083 3.917 16 C -0.130 4.130 17 C -0.127 4.127 18 C -0.149 4.149 19 C -0.129 4.129 20 C -0.137 4.137 21 H 0.095 0.905 22 H 0.028 0.972 23 H 0.145 0.855 24 H 0.142 0.858 25 H 0.138 0.862 26 H 0.140 0.860 27 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 8.859 -5.065 -0.567 10.220 hybrid contribution 1.662 1.449 -0.950 2.401 sum 10.521 -3.617 -1.517 11.228 Atomic orbital electron populations 1.69997 1.07230 1.29354 1.27921 1.25912 0.95002 1.01093 0.93178 0.86036 0.80231 0.79696 0.79348 1.19182 1.19657 1.18271 1.18336 0.94899 0.87301 1.46183 0.89166 1.21787 0.89424 0.83581 0.93540 1.75664 1.08613 1.04734 1.29273 1.74568 1.22870 1.00300 1.09444 1.24648 0.86565 0.94951 1.27695 1.86066 1.97391 0.96281 1.09572 1.44053 1.02940 1.07485 1.63881 1.17403 0.82550 0.98086 0.93616 1.21264 0.94127 1.00066 0.97542 1.20970 0.94292 0.99119 0.98357 1.21067 0.99595 1.00697 0.93524 1.20898 0.93108 1.00390 0.98466 1.21112 0.95218 1.00566 0.96780 0.90463 0.97167 0.85511 0.85803 0.86164 0.86016 0.86736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -19.11 11.96 55.56 0.66 -18.45 15 2 C 0.08 1.87 5.49 -17.29 -0.09 1.77 15 3 Si 0.92 17.90 29.57 -169.99 -5.03 12.88 15 4 H -0.27 -5.12 7.11 56.52 0.40 -4.72 15 5 H -0.27 -5.13 7.11 56.52 0.40 -4.72 15 6 H -0.26 -4.87 7.11 56.52 0.40 -4.47 15 7 C -0.43 -11.08 9.03 -38.33 -0.35 -11.43 15 8 H 0.09 2.18 7.47 -52.49 -0.39 1.79 15 9 C 0.36 9.78 7.47 -154.59 -1.16 8.63 15 10 N -0.33 -9.84 10.50 31.29 0.33 -9.51 15 11 N -0.22 -6.29 12.25 30.93 0.38 -5.91 15 12 C 0.03 0.71 8.32 -87.12 -0.72 -0.02 15 13 S -0.04 -0.84 25.93 -107.50 -2.79 -3.63 15 14 N -0.48 -11.81 2.88 -59.73 -0.17 -11.98 15 15 C 0.18 3.60 5.22 -83.62 -0.44 3.16 15 16 C -0.11 -1.99 9.61 -39.40 -0.38 -2.37 15 17 C -0.11 -1.55 10.04 -39.61 -0.40 -1.95 15 18 C -0.13 -1.69 10.04 -39.55 -0.40 -2.09 15 19 C -0.11 -1.54 10.04 -39.61 -0.40 -1.94 15 20 C -0.12 -2.05 9.90 -39.40 -0.39 -2.44 15 21 H 0.28 6.71 8.30 -40.82 -0.34 6.37 15 22 H 0.06 1.13 9.55 96.90 0.93 2.05 15 23 H 0.13 2.37 8.06 -52.49 -0.42 1.94 15 24 H 0.12 1.40 8.06 -52.49 -0.42 0.98 15 25 H 0.12 1.17 8.06 -52.49 -0.42 0.75 15 26 H 0.12 1.34 8.06 -52.49 -0.42 0.92 15 27 H 0.11 2.02 8.06 -52.49 -0.42 1.60 15 LS Contribution 265.18 15.07 4.00 4.00 Total: -1.00 -30.72 265.18 -8.05 -38.77 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -0.71 Total: 2.49 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -4.72 Total: -8.66 kcal Atomic # 7 Polarization: -47.05 SS G_CDS: 1.20 Total: -45.85 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.03 Total: 12.88 kcal Atomic # 16 Polarization: -0.84 SS G_CDS: -2.79 Total: -3.63 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -30.72 -8.05 -38.77 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006534206.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.876 kcal (2) G-P(sol) polarization free energy of solvation -30.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds