Wall clock time and date at job start Mon Mar 30 2020 03:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30798 * 1 3 3 Si 1.86800 * 120.00292 * 2 1 4 4 H 1.48507 * 109.46912 * 274.98472 * 3 2 1 5 5 H 1.48500 * 109.47098 * 34.97634 * 3 2 1 6 6 H 1.48497 * 109.47243 * 154.98549 * 3 2 1 7 7 C 1.40122 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00546 * 186.04985 * 7 2 1 9 9 C 1.39703 * 120.00061 * 6.05562 * 7 2 1 10 10 N 1.33135 * 126.58148 * 354.45793 * 9 7 2 11 11 N 1.28505 * 109.79392 * 180.02562 * 10 9 7 12 12 C 1.32361 * 110.27131 * 359.97438 * 11 10 9 13 13 S 1.76205 * 126.26518 * 180.02562 * 12 11 10 14 14 N 1.36868 * 107.47052 * 0.26332 * 12 11 10 15 15 C 1.40114 * 127.18566 * 179.72287 * 14 12 11 16 16 C 1.38852 * 120.06165 * 244.74356 * 15 14 12 17 17 C 1.38115 * 119.93012 * 179.76892 * 16 15 14 18 18 C 1.38289 * 120.06348 * 0.50981 * 17 16 15 19 19 C 1.38275 * 120.13942 * 359.74467 * 18 17 16 20 20 C 1.38117 * 120.06911 * 0.02562 * 19 18 17 21 21 H 0.96999 * 119.99836 * 0.02562 * 1 2 3 22 22 H 1.40994 * 100.00415 * 90.01990 * 13 12 11 23 23 H 1.07999 * 120.03781 * 0.02562 * 16 15 14 24 24 H 1.08002 * 119.97346 * 180.23311 * 17 16 15 25 25 H 1.08001 * 119.92952 * 179.77044 * 18 17 16 26 26 H 1.08000 * 119.97078 * 179.97438 * 19 18 17 27 27 H 1.07993 * 120.03860 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 2.3842 2.1072 -1.3949 5 1 1.4961 2.6200 0.8026 6 1 3.5883 1.4120 0.5920 7 6 2.0086 -1.2135 0.0005 8 1 3.0841 -1.2162 0.0991 9 6 1.3159 -2.4200 -0.1266 10 7 -0.0059 -2.5772 -0.1524 11 7 -0.2936 -3.8231 -0.2799 12 6 0.8138 -4.5452 -0.3446 13 16 0.9078 -6.2959 -0.5208 14 7 1.8726 -3.6836 -0.2443 15 6 3.2349 -4.0107 -0.2598 16 6 4.0170 -3.7860 0.8653 17 6 5.3586 -4.1138 0.8486 18 6 5.9253 -4.6555 -0.2906 19 6 5.1502 -4.8755 -1.4143 20 6 3.8070 -4.5541 -1.4023 21 1 -0.4850 0.8400 -0.0004 22 1 0.9316 -6.3997 -1.9267 23 1 3.5759 -3.3593 1.7539 24 1 5.9668 -3.9429 1.7247 25 1 6.9754 -4.9076 -0.3025 26 1 5.5957 -5.2982 -2.3027 27 1 3.2020 -4.7265 -2.2801 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006534206.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:07 Heat of formation + Delta-G solvation = 81.997628 kcal Electronic energy + Delta-G solvation = -15187.104802 eV Core-core repulsion = 12650.641389 eV Total energy + Delta-G solvation = -2536.463414 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 247.047 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.83496 -39.91287 -35.77874 -35.23985 -31.99084 -31.40032 -30.34499 -27.84444 -24.42779 -23.75367 -22.65438 -22.12012 -19.88758 -18.54203 -18.03264 -17.21422 -16.87508 -16.61954 -15.67641 -15.22930 -15.09055 -15.03060 -14.38877 -13.79332 -13.38287 -13.20069 -12.99571 -12.62071 -12.46788 -12.22543 -12.02791 -11.81982 -11.41548 -11.04674 -10.78759 -9.93140 -9.87744 -9.58001 -9.19045 -8.67276 -6.81478 0.17704 0.39765 0.42938 0.86546 1.36913 1.38226 1.56091 1.75235 2.11101 2.31203 2.38135 2.78971 3.18992 3.94480 4.01684 4.24329 4.50789 4.52175 4.56534 4.75948 4.90592 5.05435 5.13308 5.30062 5.44220 5.53616 5.62666 5.85615 6.04082 6.11571 6.59716 6.86917 8.25898 8.42036 Molecular weight = 247.05amu Principal moments of inertia in cm(-1) A = 0.019247 B = 0.010045 C = 0.007034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.446168 B = 2786.808973 C = 3979.745476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.030 3.970 3 Si 1.007 2.993 4 H -0.261 1.261 5 H -0.263 1.263 6 H -0.246 1.246 7 C -0.451 4.451 8 H 0.100 0.900 9 C 0.328 3.672 10 N -0.382 5.382 11 N -0.275 5.275 12 C 0.035 3.965 13 S -0.005 6.005 14 N -0.480 5.480 15 C 0.128 3.872 16 C -0.129 4.129 17 C -0.099 4.099 18 C -0.110 4.110 19 C -0.099 4.099 20 C -0.129 4.129 21 H 0.291 0.709 22 H 0.089 0.911 23 H 0.105 0.895 24 H 0.158 0.842 25 H 0.169 0.831 26 H 0.160 0.840 27 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.535 -5.318 -1.214 15.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.193 4.193 3 Si 0.825 3.175 4 H -0.185 1.185 5 H -0.188 1.188 6 H -0.169 1.169 7 C -0.490 4.490 8 H 0.118 0.882 9 C 0.087 3.913 10 N -0.233 5.233 11 N -0.121 5.121 12 C -0.336 4.336 13 S 0.145 5.855 14 N -0.179 5.179 15 C 0.036 3.964 16 C -0.149 4.149 17 C -0.118 4.118 18 C -0.128 4.128 19 C -0.117 4.117 20 C -0.149 4.149 21 H 0.102 0.898 22 H 0.053 0.947 23 H 0.123 0.877 24 H 0.176 0.824 25 H 0.186 0.814 26 H 0.178 0.822 27 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 12.802 -5.839 -1.034 14.109 hybrid contribution 0.577 1.408 -0.840 1.738 sum 13.379 -4.431 -1.875 14.218 Atomic orbital electron populations 1.70116 1.09379 1.30825 1.29378 1.27081 0.95729 1.04810 0.91652 0.84830 0.78976 0.74089 0.79620 1.18534 1.18753 1.16923 1.18707 0.95391 0.87674 1.47278 0.88226 1.22175 0.89395 0.85334 0.94387 1.75501 1.10483 1.05840 1.31452 1.74456 1.24708 1.00465 1.12478 1.25575 0.86417 0.97459 1.24112 1.85751 1.97186 0.91490 1.11111 1.44215 1.04724 1.06379 1.62561 1.17854 0.80953 1.01636 0.95925 1.21276 0.95925 1.01349 0.96377 1.21369 0.92558 0.97542 1.00294 1.21632 1.01592 0.97658 0.91897 1.21349 0.91314 0.98741 1.00322 1.21172 0.96999 1.01239 0.95492 0.89834 0.94672 0.87652 0.82422 0.81377 0.82223 0.87734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -43.00 11.96 21.86 0.26 -42.74 15 2 C 0.03 1.53 5.49 85.30 0.47 1.99 15 3 Si 1.01 37.01 29.57 68.60 2.03 39.03 15 4 H -0.26 -9.25 7.11 99.48 0.71 -8.54 15 5 H -0.26 -9.20 7.11 99.48 0.71 -8.49 15 6 H -0.25 -8.42 7.11 99.48 0.71 -7.71 15 7 C -0.45 -24.35 9.03 23.08 0.21 -24.15 15 8 H 0.10 4.95 7.47 -2.91 -0.02 4.93 15 9 C 0.33 19.06 7.47 133.13 1.00 20.06 15 10 N -0.38 -24.19 10.50 -54.90 -0.58 -24.77 15 11 N -0.28 -16.30 12.25 -56.06 -0.69 -16.98 15 12 C 0.03 1.77 8.32 179.12 1.49 3.27 15 13 S 0.00 -0.18 25.93 -56.49 -1.46 -1.64 15 14 N -0.48 -24.33 2.88 -342.90 -0.99 -25.32 15 15 C 0.13 5.21 5.22 38.11 0.20 5.41 15 16 C -0.13 -4.61 9.61 22.39 0.22 -4.40 15 17 C -0.10 -2.46 10.04 22.25 0.22 -2.24 15 18 C -0.11 -2.24 10.04 22.29 0.22 -2.01 15 19 C -0.10 -2.33 10.04 22.25 0.22 -2.11 15 20 C -0.13 -4.34 9.90 22.39 0.22 -4.11 15 21 H 0.29 14.42 8.30 -92.71 -0.77 13.65 15 22 H 0.09 3.00 9.55 73.80 0.70 3.70 15 23 H 0.11 4.09 8.06 -2.91 -0.02 4.07 15 24 H 0.16 2.82 8.06 -2.91 -0.02 2.79 15 25 H 0.17 1.95 8.06 -2.91 -0.02 1.93 15 26 H 0.16 2.57 8.06 -2.91 -0.02 2.55 15 27 H 0.10 3.62 8.06 -2.91 -0.02 3.60 15 Total: -1.00 -73.21 265.18 4.96 -68.25 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 1.92 Total: 12.47 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: 4.47 Total: -8.29 kcal Atomic # 7 Polarization: -107.83 SS G_CDS: -1.99 Total: -109.82 kcal Atomic # 14 Polarization: 37.01 SS G_CDS: 2.03 Total: 39.03 kcal Atomic # 16 Polarization: -0.18 SS G_CDS: -1.46 Total: -1.64 kcal Total: -73.21 4.96 -68.25 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006534206.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.246 kcal (2) G-P(sol) polarization free energy of solvation -73.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds