Wall clock time and date at job start Mon Mar 30 2020 03:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86805 * 120.00035 * 2 1 4 4 H 1.48493 * 109.47314 * 89.99748 * 3 2 1 5 5 H 1.48503 * 109.47028 * 210.00170 * 3 2 1 6 6 H 1.48500 * 109.46982 * 329.99712 * 3 2 1 7 7 C 1.38813 * 120.00204 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00292 * 170.28873 * 7 2 1 9 9 N 1.36939 * 119.99631 * 350.28431 * 7 2 1 10 10 C 1.46929 * 120.63011 * 327.31614 * 9 7 2 11 11 C 1.53195 * 108.77155 * 233.58533 * 10 9 7 12 12 C 1.53043 * 109.31140 * 305.36137 * 11 10 9 13 13 C 1.53038 * 109.53810 * 61.37068 * 12 11 10 14 14 C 1.46927 * 120.63081 * 147.03328 * 9 7 2 15 15 H 1.08992 * 109.58574 * 246.20647 * 14 9 7 16 16 C 1.53003 * 109.58258 * 6.62765 * 14 9 7 17 17 Br 1.96597 * 109.47405 * 292.07043 * 16 14 9 18 18 H 0.97003 * 119.99435 * 0.02562 * 1 2 3 19 19 H 1.09002 * 109.58866 * 353.36957 * 10 9 7 20 20 H 1.09002 * 109.58741 * 113.65563 * 10 9 7 21 21 H 1.08989 * 109.50157 * 65.31651 * 11 10 9 22 22 H 1.09004 * 109.49318 * 185.38374 * 11 10 9 23 23 H 1.08997 * 109.45758 * 181.38886 * 12 11 10 24 24 H 1.09001 * 109.46041 * 301.36253 * 12 11 10 25 25 H 1.09004 * 109.49841 * 58.57907 * 13 12 11 26 26 H 1.08997 * 109.50260 * 178.65092 * 13 12 11 27 27 H 1.09002 * 109.47181 * 52.07076 * 16 14 9 28 28 H 1.09002 * 109.46783 * 172.07317 * 16 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4000 5 1 3.5478 1.4402 -0.7001 6 1 1.4477 2.6527 -0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0786 -1.2088 -0.1583 9 7 1.3403 -2.3796 0.1991 10 6 0.1589 -2.4301 1.0712 11 6 0.3684 -3.5249 2.1221 12 6 0.6880 -4.8464 1.4195 13 6 1.9800 -4.6978 0.6128 14 6 1.7855 -3.6152 -0.4596 15 1 1.0315 -3.9389 -1.1770 16 6 3.1102 -3.3624 -1.1823 17 35 2.8090 -2.1448 -2.6962 18 1 -0.4849 0.8401 -0.0004 19 1 0.0291 -1.4680 1.5667 20 1 -0.7255 -2.6567 0.4756 21 1 1.1974 -3.2497 2.7739 22 1 -0.5390 -3.6380 2.7154 23 1 0.8132 -5.6325 2.1641 24 1 -0.1305 -5.1084 0.7489 25 1 2.7939 -4.4114 1.2789 26 1 2.2198 -5.6462 0.1320 27 1 3.8217 -2.9123 -0.4900 28 1 3.5095 -4.3076 -1.5502 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034520916.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:43 Heat of formation + Delta-G solvation = 11.922538 kcal Electronic energy + Delta-G solvation = -11968.478610 eV Core-core repulsion = 9872.903450 eV Total energy + Delta-G solvation = -2095.575160 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 247.027 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -37.71741 -33.03602 -32.28846 -29.81699 -28.98260 -25.72949 -24.54024 -22.02054 -20.51583 -19.06828 -16.33036 -15.38536 -14.01389 -13.93492 -13.54396 -13.19587 -12.70763 -12.42720 -11.91186 -11.55487 -11.01582 -10.79574 -10.64806 -10.50455 -10.19872 -10.04254 -9.91616 -9.57406 -9.31215 -8.89607 -8.78771 -8.13331 -6.46655 -5.66992 -3.13525 2.70086 3.43997 3.51060 3.52828 4.57223 5.23352 5.39783 5.55946 5.65636 5.71253 5.92062 5.93693 6.09735 6.23442 6.36089 6.38920 6.59148 6.75640 6.77684 6.91423 7.02435 7.46804 7.76633 7.89930 8.56286 9.31846 9.91976 10.50009 11.41518 Molecular weight = 247.03amu Principal moments of inertia in cm(-1) A = 0.019932 B = 0.016987 C = 0.010097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.470995 B = 1647.911605 C = 2772.374767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.016 3.984 3 Si 0.891 3.109 4 H -0.290 1.290 5 H -0.276 1.276 6 H -0.292 1.292 7 C -0.240 4.240 8 H 0.065 0.935 9 N -0.584 5.584 10 C 0.175 3.825 11 C -0.144 4.144 12 C -0.107 4.107 13 C -0.129 4.129 14 C 0.170 3.830 15 H 0.034 0.966 16 C -0.063 4.063 17 Br -0.154 7.154 18 H 0.251 0.749 19 H 0.087 0.913 20 H 0.017 0.983 21 H 0.052 0.948 22 H 0.046 0.954 23 H 0.043 0.957 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.048 0.952 27 H 0.095 0.905 28 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.426 -7.774 -1.441 9.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.182 4.182 3 Si 0.721 3.279 4 H -0.217 1.217 5 H -0.201 1.201 6 H -0.218 1.218 7 C -0.370 4.370 8 H 0.083 0.917 9 N -0.307 5.307 10 C 0.050 3.950 11 C -0.183 4.183 12 C -0.145 4.145 13 C -0.170 4.170 14 C 0.063 3.937 15 H 0.052 0.948 16 C -0.179 4.179 17 Br -0.073 7.073 18 H 0.061 0.939 19 H 0.105 0.895 20 H 0.035 0.965 21 H 0.071 0.929 22 H 0.064 0.936 23 H 0.061 0.939 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.067 0.933 27 H 0.113 0.887 28 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.230 -7.194 -1.987 8.579 hybrid contribution 0.464 0.629 0.322 0.845 sum 4.695 -6.565 -1.665 8.241 Atomic orbital electron populations 1.69963 1.05218 1.25116 1.54411 1.25011 0.95114 0.97857 1.00266 0.86449 0.79608 0.84387 0.77477 1.21709 1.20083 1.21804 1.18978 0.90701 0.83422 1.43903 0.91747 1.44037 1.32627 1.03532 1.50535 1.20756 0.87947 0.96789 0.89536 1.22208 0.99739 0.96859 0.99530 1.21355 0.97383 0.97429 0.98304 1.22122 0.98014 0.98063 0.98751 1.20643 0.92093 0.89002 0.91978 0.94823 1.24797 1.01920 0.96819 0.94381 1.97244 1.97953 1.68429 1.43670 0.93861 0.89475 0.96518 0.92895 0.93576 0.93854 0.92889 0.92279 0.93327 0.88657 0.90175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.04 11.10 55.49 0.62 -25.42 15 2 C 0.02 0.45 5.06 -17.43 -0.09 0.36 15 3 Si 0.89 21.99 29.56 -169.99 -5.03 16.97 15 4 H -0.29 -7.12 7.11 56.52 0.40 -6.72 15 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 6 H -0.29 -7.34 7.11 56.52 0.40 -6.94 15 7 C -0.24 -6.26 6.93 -15.06 -0.10 -6.37 15 8 H 0.06 1.67 5.74 -52.49 -0.30 1.37 15 9 N -0.58 -14.04 2.97 -164.52 -0.49 -14.53 15 10 C 0.18 4.14 5.24 -3.71 -0.02 4.12 15 11 C -0.14 -2.75 6.08 -26.61 -0.16 -2.92 15 12 C -0.11 -1.81 5.88 -26.69 -0.16 -1.96 15 13 C -0.13 -2.20 5.40 -26.39 -0.14 -2.34 15 14 C 0.17 3.44 2.94 -67.37 -0.20 3.24 15 15 H 0.03 0.73 8.14 -51.93 -0.42 0.31 15 16 C -0.06 -1.15 5.45 37.16 0.20 -0.95 15 17 Br -0.15 -3.14 31.43 -68.01 -2.14 -5.28 15 18 H 0.25 7.11 8.31 -40.82 -0.34 6.77 15 19 H 0.09 2.31 6.18 -51.93 -0.32 1.99 15 20 H 0.02 0.42 8.14 -51.93 -0.42 0.00 15 21 H 0.05 1.03 8.14 -51.94 -0.42 0.61 15 22 H 0.05 0.80 8.14 -51.93 -0.42 0.38 15 23 H 0.04 0.64 8.14 -51.93 -0.42 0.21 15 24 H 0.05 0.90 8.14 -51.93 -0.42 0.47 15 25 H 0.06 1.02 8.14 -51.93 -0.42 0.59 15 26 H 0.05 0.71 8.14 -51.93 -0.42 0.28 15 27 H 0.09 1.79 6.92 -51.93 -0.36 1.43 15 28 H 0.08 1.20 8.14 -51.93 -0.42 0.78 15 LS Contribution 239.78 15.07 3.61 3.61 Total: -1.00 -28.22 239.78 -8.01 -36.24 By element: Atomic # 1 Polarization: -0.85 SS G_CDS: -3.92 Total: -4.77 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: -0.67 Total: -6.82 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: 0.13 Total: -39.95 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.97 kcal Atomic # 35 Polarization: -3.14 SS G_CDS: -2.14 Total: -5.28 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -28.22 -8.01 -36.24 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034520916.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.159 kcal (2) G-P(sol) polarization free energy of solvation -28.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds