Wall clock time and date at job start Mon Mar 30 2020 03:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86805 * 120.00035 * 2 1 4 4 H 1.48493 * 109.47314 * 89.99748 * 3 2 1 5 5 H 1.48503 * 109.47028 * 210.00170 * 3 2 1 6 6 H 1.48500 * 109.46982 * 329.99712 * 3 2 1 7 7 C 1.38813 * 120.00204 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00292 * 170.28873 * 7 2 1 9 9 N 1.36939 * 119.99631 * 350.28431 * 7 2 1 10 10 C 1.46929 * 120.63011 * 327.31614 * 9 7 2 11 11 C 1.53195 * 108.77155 * 233.58533 * 10 9 7 12 12 C 1.53043 * 109.31140 * 305.36137 * 11 10 9 13 13 C 1.53038 * 109.53810 * 61.37068 * 12 11 10 14 14 C 1.46927 * 120.63081 * 147.03328 * 9 7 2 15 15 H 1.08992 * 109.58574 * 246.20647 * 14 9 7 16 16 C 1.53003 * 109.58258 * 6.62765 * 14 9 7 17 17 Br 1.96597 * 109.47405 * 292.07043 * 16 14 9 18 18 H 0.97003 * 119.99435 * 0.02562 * 1 2 3 19 19 H 1.09002 * 109.58866 * 353.36957 * 10 9 7 20 20 H 1.09002 * 109.58741 * 113.65563 * 10 9 7 21 21 H 1.08989 * 109.50157 * 65.31651 * 11 10 9 22 22 H 1.09004 * 109.49318 * 185.38374 * 11 10 9 23 23 H 1.08997 * 109.45758 * 181.38886 * 12 11 10 24 24 H 1.09001 * 109.46041 * 301.36253 * 12 11 10 25 25 H 1.09004 * 109.49841 * 58.57907 * 13 12 11 26 26 H 1.08997 * 109.50260 * 178.65092 * 13 12 11 27 27 H 1.09002 * 109.47181 * 52.07076 * 16 14 9 28 28 H 1.09002 * 109.46783 * 172.07317 * 16 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4000 5 1 3.5478 1.4402 -0.7001 6 1 1.4477 2.6527 -0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0786 -1.2088 -0.1583 9 7 1.3403 -2.3796 0.1991 10 6 0.1589 -2.4301 1.0712 11 6 0.3684 -3.5249 2.1221 12 6 0.6880 -4.8464 1.4195 13 6 1.9800 -4.6978 0.6128 14 6 1.7855 -3.6152 -0.4596 15 1 1.0315 -3.9389 -1.1770 16 6 3.1102 -3.3624 -1.1823 17 35 2.8090 -2.1448 -2.6962 18 1 -0.4849 0.8401 -0.0004 19 1 0.0291 -1.4680 1.5667 20 1 -0.7255 -2.6567 0.4756 21 1 1.1974 -3.2497 2.7739 22 1 -0.5390 -3.6380 2.7154 23 1 0.8132 -5.6325 2.1641 24 1 -0.1305 -5.1084 0.7489 25 1 2.7939 -4.4114 1.2789 26 1 2.2198 -5.6462 0.1320 27 1 3.8217 -2.9123 -0.4900 28 1 3.5095 -4.3076 -1.5502 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034520916.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:42 Heat of formation + Delta-G solvation = -4.163713 kcal Electronic energy + Delta-G solvation = -11969.176162 eV Core-core repulsion = 9872.903450 eV Total energy + Delta-G solvation = -2096.272713 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 247.027 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.36989 -34.84655 -33.91732 -31.66717 -30.53932 -27.47054 -26.25752 -23.72573 -22.11291 -20.71485 -18.23464 -17.20093 -15.84250 -15.64866 -15.04963 -14.83165 -14.33211 -14.04303 -13.63232 -13.09829 -12.83936 -12.66115 -12.40896 -12.28253 -11.95031 -11.72299 -11.50809 -11.20945 -11.01950 -10.64332 -10.39722 -9.98507 -8.42461 -7.72494 -5.19813 1.20935 1.46358 1.49155 1.55324 2.58101 3.46846 3.60005 3.96254 4.24268 4.27881 4.38629 4.52920 4.58331 4.70925 4.85681 5.00389 5.13533 5.23343 5.31387 5.42492 5.48689 5.66899 5.80798 5.88273 6.53600 7.30130 7.96731 8.50430 9.34039 Molecular weight = 247.03amu Principal moments of inertia in cm(-1) A = 0.019932 B = 0.016987 C = 0.010097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.470995 B = 1647.911605 C = 2772.374767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.036 4.036 3 Si 0.935 3.065 4 H -0.289 1.289 5 H -0.268 1.268 6 H -0.303 1.303 7 C -0.222 4.222 8 H 0.069 0.931 9 N -0.600 5.600 10 C 0.179 3.821 11 C -0.134 4.134 12 C -0.104 4.104 13 C -0.120 4.120 14 C 0.163 3.837 15 H 0.020 0.980 16 C -0.056 4.056 17 Br -0.180 7.180 18 H 0.242 0.758 19 H 0.051 0.949 20 H -0.010 1.010 21 H 0.050 0.950 22 H 0.061 0.939 23 H 0.077 0.923 24 H 0.050 0.950 25 H 0.061 0.939 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.802 -9.808 -0.960 11.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.231 4.231 3 Si 0.766 3.234 4 H -0.216 1.216 5 H -0.192 1.192 6 H -0.230 1.230 7 C -0.352 4.352 8 H 0.086 0.914 9 N -0.324 5.324 10 C 0.054 3.946 11 C -0.173 4.173 12 C -0.142 4.142 13 C -0.160 4.160 14 C 0.057 3.943 15 H 0.038 0.962 16 C -0.172 4.172 17 Br -0.100 7.100 18 H 0.052 0.948 19 H 0.069 0.931 20 H 0.008 0.992 21 H 0.069 0.931 22 H 0.080 0.920 23 H 0.095 0.905 24 H 0.069 0.931 25 H 0.080 0.920 26 H 0.103 0.897 27 H 0.111 0.889 28 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.636 -9.257 -1.501 10.941 hybrid contribution 0.051 1.167 0.170 1.181 sum 5.687 -8.090 -1.331 9.978 Atomic orbital electron populations 1.70114 1.06397 1.24809 1.57101 1.25547 0.95592 1.00265 1.01726 0.85718 0.78772 0.81698 0.77254 1.21607 1.19224 1.22973 1.19173 0.90883 0.84144 1.41020 0.91362 1.44288 1.32380 1.04392 1.51372 1.20553 0.87190 0.96756 0.90140 1.22041 1.00500 0.96542 0.98203 1.21357 0.97278 0.96659 0.98901 1.22035 0.98119 0.98164 0.97703 1.20874 0.92401 0.88211 0.92839 0.96197 1.24889 1.00902 0.98057 0.93311 1.97259 1.97997 1.69428 1.45288 0.94834 0.93104 0.99227 0.93099 0.92001 0.90466 0.93077 0.92025 0.89724 0.88851 0.85986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.70 11.10 21.65 0.24 -55.46 15 2 C -0.04 -2.02 5.06 84.86 0.43 -1.59 15 3 Si 0.94 45.60 29.56 68.60 2.03 47.63 15 4 H -0.29 -13.86 7.11 99.48 0.71 -13.16 15 5 H -0.27 -12.52 7.11 99.48 0.71 -11.81 15 6 H -0.30 -15.17 7.11 99.48 0.71 -14.46 15 7 C -0.22 -11.46 6.93 84.03 0.58 -10.88 15 8 H 0.07 3.46 5.74 -2.92 -0.02 3.44 15 9 N -0.60 -28.46 2.97 -674.41 -2.01 -30.47 15 10 C 0.18 8.53 5.24 86.36 0.45 8.98 15 11 C -0.13 -4.86 6.08 30.67 0.19 -4.67 15 12 C -0.10 -3.13 5.88 30.62 0.18 -2.95 15 13 C -0.12 -3.58 5.40 30.82 0.17 -3.41 15 14 C 0.16 6.20 2.94 45.12 0.13 6.33 15 15 H 0.02 0.84 8.14 -2.39 -0.02 0.82 15 16 C -0.06 -1.89 5.45 71.98 0.39 -1.50 15 17 Br -0.18 -7.14 31.43 -20.37 -0.64 -7.78 15 18 H 0.24 14.25 8.31 -92.71 -0.77 13.48 15 19 H 0.05 2.77 6.18 -2.39 -0.01 2.76 15 20 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 15 21 H 0.05 1.87 8.14 -2.39 -0.02 1.85 15 22 H 0.06 2.03 8.14 -2.38 -0.02 2.01 15 23 H 0.08 1.87 8.14 -2.39 -0.02 1.85 15 24 H 0.05 1.56 8.14 -2.39 -0.02 1.55 15 25 H 0.06 1.84 8.14 -2.39 -0.02 1.82 15 26 H 0.08 1.97 8.14 -2.39 -0.02 1.95 15 27 H 0.09 3.23 6.92 -2.39 -0.02 3.21 15 28 H 0.12 3.11 8.14 -2.39 -0.02 3.09 15 Total: -1.00 -61.19 239.78 3.27 -57.92 By element: Atomic # 1 Polarization: -3.30 SS G_CDS: 1.13 Total: -2.17 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: 2.52 Total: -9.68 kcal Atomic # 7 Polarization: -84.16 SS G_CDS: -1.77 Total: -85.92 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Atomic # 35 Polarization: -7.14 SS G_CDS: -0.64 Total: -7.78 kcal Total: -61.19 3.27 -57.92 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034520916.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.760 kcal (2) G-P(sol) polarization free energy of solvation -61.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds